AP Biology Vocabulary List
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Glossary - Cellbiology
1 Glossary - Cellbiology Blotting: (Blot Analysis) Widely used biochemical technique for detecting the presence of specific macromolecules (proteins, mRNAs, or DNA sequences) in a mixture. A sample first is separated on an agarose or polyacrylamide gel usually under denaturing conditions; the separated components are transferred (blotting) to a nitrocellulose sheet, which is exposed to a radiolabeled molecule that specifically binds to the macromolecule of interest, and then subjected to autoradiography. Northern B.: mRNAs are detected with a complementary DNA; Southern B.: DNA restriction fragments are detected with complementary nucleotide sequences; Western B.: Proteins are detected by specific antibodies. Cell: The fundamental unit of living organisms. Cells are bounded by a lipid-containing plasma membrane, containing the central nucleus, and the cytoplasm. Cells are generally capable of independent reproduction. More complex cells like Eukaryotes have various compartments (organelles) where special tasks essential for the survival of the cell take place. Cytoplasm: Viscous contents of a cell that are contained within the plasma membrane but, in eukaryotic cells, outside the nucleus. The part of the cytoplasm not contained in any organelle is called the Cytosol. Cytoskeleton: (Gk. ) Three dimensional network of fibrous elements, allowing precisely regulated movements of cell parts, transport organelles, and help to maintain a cell’s shape. • Actin filament: (Microfilaments) Ubiquitous eukaryotic cytoskeletal proteins (one end is attached to the cell-cortex) of two “twisted“ actin monomers; are important in the structural support and movement of cells. Each actin filament (F-actin) consists of two strands of globular subunits (G-Actin) wrapped around each other to form a polarized unit (high ionic cytoplasm lead to the formation of AF, whereas low ion-concentration disassembles AF). -
Mobile Genetic Elements in Streptococci
Curr. Issues Mol. Biol. (2019) 32: 123-166. DOI: https://dx.doi.org/10.21775/cimb.032.123 Mobile Genetic Elements in Streptococci Miao Lu#, Tao Gong#, Anqi Zhang, Boyu Tang, Jiamin Chen, Zhong Zhang, Yuqing Li*, Xuedong Zhou* State Key Laboratory of Oral Diseases, National Clinical Research Center for Oral Diseases, West China Hospital of Stomatology, Sichuan University, Chengdu, PR China. #Miao Lu and Tao Gong contributed equally to this work. *Address correspondence to: [email protected], [email protected] Abstract Streptococci are a group of Gram-positive bacteria belonging to the family Streptococcaceae, which are responsible of multiple diseases. Some of these species can cause invasive infection that may result in life-threatening illness. Moreover, antibiotic-resistant bacteria are considerably increasing, thus imposing a global consideration. One of the main causes of this resistance is the horizontal gene transfer (HGT), associated to gene transfer agents including transposons, integrons, plasmids and bacteriophages. These agents, which are called mobile genetic elements (MGEs), encode proteins able to mediate DNA movements. This review briefly describes MGEs in streptococci, focusing on their structure and properties related to HGT and antibiotic resistance. caister.com/cimb 123 Curr. Issues Mol. Biol. (2019) Vol. 32 Mobile Genetic Elements Lu et al Introduction Streptococci are a group of Gram-positive bacteria widely distributed across human and animals. Unlike the Staphylococcus species, streptococci are catalase negative and are subclassified into the three subspecies alpha, beta and gamma according to the partial, complete or absent hemolysis induced, respectively. The beta hemolytic streptococci species are further classified by the cell wall carbohydrate composition (Lancefield, 1933) and according to human diseases in Lancefield groups A, B, C and G. -
Buzzle – Zoology Terms – Glossary of Biology Terms and Definitions Http
Buzzle – Zoology Terms – Glossary of Biology Terms and Definitions http://www.buzzle.com/articles/biology-terms-glossary-of-biology-terms-and- definitions.html#ZoologyGlossary Biology is the branch of science concerned with the study of life: structure, growth, functioning and evolution of living things. This discipline of science comprises three sub-disciplines that are botany (study of plants), Zoology (study of animals) and Microbiology (study of microorganisms). This vast subject of science involves the usage of myriads of biology terms, which are essential to be comprehended correctly. People involved in the science field encounter innumerable jargons during their study, research or work. Moreover, since science is a part of everybody's life, it is something that is important to all individuals. A Abdomen: Abdomen in mammals is the portion of the body which is located below the rib cage, and in arthropods below the thorax. It is the cavity that contains stomach, intestines, etc. Abscission: Abscission is a process of shedding or separating part of an organism from the rest of it. Common examples are that of, plant parts like leaves, fruits, flowers and bark being separated from the plant. Accidental: Accidental refers to the occurrences or existence of all those species that would not be found in a particular region under normal circumstances. Acclimation: Acclimation refers to the morphological and/or physiological changes experienced by various organisms to adapt or accustom themselves to a new climate or environment. Active Transport: The movement of cellular substances like ions or molecules by traveling across the membrane, towards a higher level of concentration while consuming energy. -
Tie-Up Cycles in Long-Term Mating. Part I: Theory
challenges Article Tie-Up Cycles in Long-Term Mating. Part I: Theory Lorenza Lucchi Basili 1,† and Pier Luigi Sacco 2,3,*,† 1 Independent Researcher, 20 Chestnut Street, Cambridge, MA 02139, USA; [email protected] 2 Department of Romance Languages and Literatures, Harvard University, Boylston Hall, Cambridge, MA 02138, USA 3 Department of Comparative Literature and Language Sciences, IULM University, via Carlo Bo, 1, Milan 20143, Italy * Correspondence: [email protected]; Tel.: +1-617-496-0486 † These authors contributed equally to this work. Academic Editor: Palmiro Poltronieri Received: 26 February 2016; Accepted: 26 April 2016; Published: 3 May 2016 Abstract: In this paper, we propose a new approach to couple formation and dynamics that abridges findings from sexual strategies theory and attachment theory to develop a framework where the sexual and emotional aspects of mating are considered in their strategic interaction. Our approach presents several testable implications, some of which find interesting correspondences in the existing literature. Our main result is that, according to our approach, there are six typical dynamic interaction patterns that are more or less conducive to the formation of a stable couple, and that set out an interesting typology for the analysis of real (as well as fictional, as we will see in the second part of the paper) mating behaviors and dynamics. Keywords: sexual strategies; emotional attachment; mating; couple formation and dynamics; Tie-Up; Active vs. Receptive Areas; frustration and reward; Tie-Up Cycle; flow inversion 1. Introduction The process of reproductive mating is a clear example of a complex socio-biological phenomenon, of paramount evolutionary importance. -
Revised Glossary for AQA GCSE Biology Student Book
Biology Glossary amino acids small molecules from which proteins are A built abiotic factor physical or non-living conditions amylase a digestive enzyme (carbohydrase) that that affect the distribution of a population in an breaks down starch ecosystem, such as light, temperature, soil pH anaerobic respiration respiration without using absorption the process by which soluble products oxygen of digestion move into the blood from the small intestine antibacterial chemicals chemicals produced by plants as a defence mechanism; the amount abstinence method of contraception whereby the produced will increase if the plant is under attack couple refrains from intercourse, particularly when an egg might be in the oviduct antibiotic e.g. penicillin; medicines that work inside the body to kill bacterial pathogens accommodation ability of the eyes to change focus antibody protein normally present in the body acid rain rain water which is made more acidic by or produced in response to an antigen, which it pollutant gases neutralises, thus producing an immune response active site the place on an enzyme where the antimicrobial resistance (AMR) an increasing substrate molecule binds problem in the twenty-first century whereby active transport in active transport, cells use energy bacteria have evolved to develop resistance against to transport substances through cell membranes antibiotics due to their overuse against a concentration gradient antiretroviral drugs drugs used to treat HIV adaptation features that organisms have to help infections; they -
4.3 the Light-Dependent 4B, 9B Photosynthesis Indetail 9B Transfers Energy
DO NOT EDIT--Changes must be made through “File info” CorrectionKey=B 4.3 Photosynthesis in Detail 4B, 9B KEY CONCEPT Photosynthesis requires a series of chemical reactions. VOCABULARY MAIN IDEAS photosystem The first stage of photosynthesis captures and transfers energy. electron transport chain The second stage of photosynthesis uses energy from the first stage to make sugars. ATP synthase Calvin cycle Connect to Your World In a way, the sugar-producing cells in leaves are like tiny factories with assembly lines. 4B investigate and explain cellular processes, including In a factory, different workers with separate jobs have to work together to put homeostasis, energy conversions, together a finished product. Similarly, in photosynthesis many different chemical transport of molecules, and synthesis of new molecules and 9B reactions, enzymes, and ions work together in a precise order to make the sugars compare the reactants and products that are the finished product. of photosynthesis and cellular respiration in terms of energy and matter MaiN IDEA 4B, 9B The first stage of photosynthesis captures and transfers energy. In Section 2, you read a summary of photosynthesis. However, the process is much more involved than that general description might suggest. For exam- ple, during the light-dependent reactions, light energy is captured and trans- ferred in the thylakoid membranes by two groups of molecules called photosystems. The two photosystems are called photosystem I and photosys- tem II. Overview of the Light-Dependent Reactions FIGURE 3.1 The light-dependent The light-dependent reactions are the photo- part of photosynthesis. During reactions capture energy from sun- light and transfer energy through the light-dependent reactions, chlorophyll and other light-absorbing electrons. -
Penetration of Hard Substrates by a Fungus Employing Enormous Turgor Pressures (Appressorium/Biodeterioration/Magnaporthe Gnsea/Plant Pathogen/Rice Blast) RICHARD J
Proc. Natd. Acad. Sci. USA Vol. 88, pp. 11281-11284, December 1991 Microbiology Penetration of hard substrates by a fungus employing enormous turgor pressures (appressorium/biodeterioration/Magnaporthe gnsea/plant pathogen/rice blast) RICHARD J. HOWARD*t, MARGARET A. FERRARI*, DAVID H. ROACHt, AND NICHOLAS P. MONEY§ *Central Research and Development, and tFibers, The DuPont Company, Wilmington, DE 19880-0402; and §Department of Biochemistry, Colorado State University, Fort Collins, CO 80523 Communicated by Arthur Kelman, September 20, 1991 (receivedfor review June 27, 1991) ABSTRACT Many fungal pathogens penetrate plant MATERIALS AND METHODS an The rice leaves from a specialized cell called appressorium. Organism and Growth Conditions. These studies were blast pathogen Magnaporthegnsea can also penetrate synthetic conducted with strain 042 (see ref. 8) of M. grisea (Hebert) surfaces such as poly(vinyl chloride). Previous experiments time requires an elevated appres- Barr, telomorph of Pyricularia grisea Sacc. (10). The have suggested that penetration course of infection-structure development in vitro has been sorial turgor pressure. In the present report we have used well documented and closely resembles development on the nonbiodegradable Mylar membranes, exhibiting a range of in that penetration is host (11, 12). When harvested and placed on a surface surface hardness, to test the proposition distilled water, conidia germinate in 1-3 hr to form germ driven by turgor. Reducing appressorial turgor by osmotic to form and are firmly stress inhibited penetration ofthese membranes. The size ofthe tubes. By 4 hr appressoria begin was a function of attached to the substratum. By 6-8 hr their structure appears turgor deficit required to inhibit penetration complete. -
Phytochrome Effects in the Nyctinastic Leaf Movements of Albizzia Julibrissin and Some Other Legumes1 2 William S
Plant Physiol. (1967) 42, 1413-1418 Phytochrome Effects in the Nyctinastic Leaf Movements of Albizzia julibrissin and Some Other Legumes1 2 William S. Hillman and Willard L. Koukkari Biology Department, Brookhaven National Laboratory, Upton, New York 11973 Received June 5, 1967. Summnary. Participation of phytochrome 'is evident in the nyctinastic responise of leaves of Albizzia julibrissin (silk-tree), Albizzia lophantha, Leucaena glauca, Poinciana gilliesi and Calliandra inequilatera; closure of excised pairs of pinnules upon darkening is rapid following red illumination and slow following far-red. Under good conditions the difiference is obvious within 10 minutes. These observations conifirm a report by Fondeville, Borthwick, and Hendricks on the sensitive plant, Mimosa pudica, but indicate that the efifect bears no necessary relationship to the anomalous sensitivity of Mimosa. In A. julibrissin, phytochrome control is mnarked in experiments conducted early in the daily 12-hour light period and appears absent, or nearly so, toward the end of the light period, perhaps due to interaction with an endogenous circadian rhythm. Effects of leaf maturity and of the position of a pinnule-pair within a leaf are also evident. Tih-ese results are not easily reconciled with hypotheses of phytochrome action through gene activation and nucleic acid synthesis, but are consistent with hypothess ibased onl permeability changes and membrane properties. The mgnitude and reproducibility of the response in A. jutlibrissin suggest its use as a lajboratory exercise; this and related systems should prove valuable for eventuai identification of the mechanism of phytochrome action. Fondeville, Borthwick, and Hendricks (2) re- pinnately twice-compound leaves generally similar in ported on a role of phytochrome in the nyctinastic character to those of Mimosa pudica, (but not obviously response of the sensitive plant, Mimnosa pudica: closure sensitive to the touch. -
Chapter 3 the Title and Subtitle of This Chapter Convey a Dual Meaning
3.1. Introduction Chapter 3 The title and subtitle of this chapter convey a dual meaning. At first reading, the subtitle Photosynthetic Reaction might seem to indicate that the topic of the structure, function and organization of Centers: photosynthetic reaction centers is So little time, so much to do exceedingly complex and that there is simply insufficient time or space in this brief article to cover the details. While this is John H. Golbeck certainly the case, the subtitle is Department of Biochemistry additionally meant to convey the idea that there is precious little time after the and absorption of a photon to accomplish the Molecular Biology task of preserving the energy in the form of The Pennsylvania State University stable charge separation. University Park, PA 16802 USA The difficulty is there exists a fundamental physical limitation in the amount of time available so that a photochemically induced excited state can be utilized before the energy is invariably wasted. Indeed, the entire design philosophy of biological reaction centers is centered on overcoming this physical, rather than chemical or biological, limitation. In this chapter, I will outline the problem of conserving the free energy of light-induced charge separation by focusing on the following topics: 3.2. Definition of the problem: the need to stabilize a charge-separated state. 3.3. The bacterial reaction center: how the cofactors and proteins cope with this problem in a model system. 3.4. Review of Marcus theory: what governs the rate of electron transfer in proteins? 3.5. Photosystem II: a variation on a theme of the bacterial reaction center. -
Horizontal Gene Transfer
Genetic Variation: The genetic substrate for natural selection Horizontal Gene Transfer Dr. Carol E. Lee, University of Wisconsin Copyright ©2020; Do not upload without permission What about organisms that do not have sexual reproduction? In prokaryotes: Horizontal gene transfer (HGT): Also termed Lateral Gene Transfer - the lateral transmission of genes between individual cells, either directly or indirectly. Could include transformation, transduction, and conjugation. This transfer of genes between organisms occurs in a manner distinct from the vertical transmission of genes from parent to offspring via sexual reproduction. These mechanisms not only generate new gene assortments, they also help move genes throughout populations and from species to species. HGT has been shown to be an important factor in the evolution of many organisms. From some basic background on prokaryotic genome architecture Smaller Population Size • Differences in genome architecture (noncoding, nonfunctional) (regulatory sequence) (transcribed sequence) General Principles • Most conserved feature of Prokaryotes is the operon • Gene Order: Prokaryotic gene order is not conserved (aside from order within the operon), whereas in Eukaryotes gene order tends to be conserved across taxa • Intron-exon genomic organization: The distinctive feature of eukaryotic genomes that sharply separates them from prokaryotic genomes is the presence of spliceosomal introns that interrupt protein-coding genes Small vs. Large Genomes 1. Compact, relatively small genomes of viruses, archaea, bacteria (typically, <10Mb), and many unicellular eukaryotes (typically, <20 Mb). In these genomes, protein-coding and RNA-coding sequences occupy most of the genomic sequence. 2. Expansive, large genomes of multicellular and some unicellular eukaryotes (typically, >100 Mb). In these genomes, the majority of the nucleotide sequence is non-coding. -
CHEM 109A Organic Chemistry
2/23/18 CHEM 109A Organic Chemistry https://labs.chem.ucsb.edu/zakarian/armen/courses.html Chapter 5 Alkene: Introduction Thermodynamics and Kinetics Midterm 2..... Grades will be posted on Tuesday, Feb. 27th . Tests can be picked up outside room CHEM 2138 starting Tuesday, Feb. 27th 1 2/23/18 A Reaction Coordinate Diagram time A reaction coordinate diagram shows the energy changes that take place in each step of a reaction. Thermodynamics and Kinetics Thermodynamics: • are products more stable than starting materials? • overall, are new bonds in products stronger than the old in starting materials? • deals with equilibria Kinetics: • which reaction is faster? Reaction rates • How high is the energy of the transition state? • deals with mechanism of reactions or is Z more stable than Y? 2 2/23/18 The Equilibrium Constant (thermodynamics) The equilibrium constant gives the relative concentration of reactants and products at equilibrium. Exergonic and Endergonic Reactions ∆G° = free energy of the products - free energy of the reactants the relationship between ∆G° and Keq : 3 2/23/18 Exergonic and Endergonic Reactions ∆G° = free energy of the products - free energy of the reactants the relationship between ∆G° and Keq : ∆G° negative: exergonic reaction, products more stable ∆G° positive: endergonic reaction, products less stable Gibbs Free-Energy Change (∆G°) (thermodynamics) 4 2/23/18 Increasing the Amount of a Product Formed in a Reaction (thermodynamics) Le Chatelier’s Principle: if an equilibrium is disturbed, the system will adjust -
Microevolution and the Genetics of Populations Microevolution Refers to Varieties Within a Given Type
Chapter 8: Evolution Lesson 8.3: Microevolution and the Genetics of Populations Microevolution refers to varieties within a given type. Change happens within a group, but the descendant is clearly of the same type as the ancestor. This might better be called variation, or adaptation, but the changes are "horizontal" in effect, not "vertical." Such changes might be accomplished by "natural selection," in which a trait within the present variety is selected as the best for a given set of conditions, or accomplished by "artificial selection," such as when dog breeders produce a new breed of dog. Lesson Objectives ● Distinguish what is microevolution and how it affects changes in populations. ● Define gene pool, and explain how to calculate allele frequencies. ● State the Hardy-Weinberg theorem ● Identify the five forces of evolution. Vocabulary ● adaptive radiation ● gene pool ● migration ● allele frequency ● genetic drift ● mutation ● artificial selection ● Hardy-Weinberg theorem ● natural selection ● directional selection ● macroevolution ● population genetics ● disruptive selection ● microevolution ● stabilizing selection ● gene flow Introduction Darwin knew that heritable variations are needed for evolution to occur. However, he knew nothing about Mendel’s laws of genetics. Mendel’s laws were rediscovered in the early 1900s. Only then could scientists fully understand the process of evolution. Microevolution is how individual traits within a population change over time. In order for a population to change, some things must be assumed to be true. In other words, there must be some sort of process happening that causes microevolution. The five ways alleles within a population change over time are natural selection, migration (gene flow), mating, mutations, or genetic drift.