From the Lower Devonian Rhynie Chert
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Perspectives in Phycology Vol
Perspectives in Phycology Vol. 3 (2016), Issue 3, p. 141–154 Article Published online June 2016 Diversity and ecology of green microalgae in marine systems: an overview based on 18S rRNA gene sequences Margot Tragin1, Adriana Lopes dos Santos1, Richard Christen2,3 and Daniel Vaulot1* 1 Sorbonne Universités, UPMC Univ Paris 06, CNRS, UMR 7144, Station Biologique, Place Georges Teissier, 29680 Roscoff, France 2 CNRS, UMR 7138, Systématique Adaptation Evolution, Parc Valrose, BP71. F06108 Nice cedex 02, France 3 Université de Nice-Sophia Antipolis, UMR 7138, Systématique Adaptation Evolution, Parc Valrose, BP71. F06108 Nice cedex 02, France * Corresponding author: [email protected] With 5 figures in the text and an electronic supplement Abstract: Green algae (Chlorophyta) are an important group of microalgae whose diversity and ecological importance in marine systems has been little studied. In this review, we first present an overview of Chlorophyta taxonomy and detail the most important groups from the marine environment. Then, using public 18S rRNA Chlorophyta sequences from culture and natural samples retrieved from the annotated Protist Ribosomal Reference (PR²) database, we illustrate the distribution of different green algal lineages in the oceans. The largest group of sequences belongs to the class Mamiellophyceae and in particular to the three genera Micromonas, Bathycoccus and Ostreococcus. These sequences originate mostly from coastal regions. Other groups with a large number of sequences include the Trebouxiophyceae, Chlorophyceae, Chlorodendrophyceae and Pyramimonadales. Some groups, such as the undescribed prasinophytes clades VII and IX, are mostly composed of environmental sequences. The 18S rRNA sequence database we assembled and validated should be useful for the analysis of metabarcode datasets acquired using next generation sequencing. -
University of Oklahoma
UNIVERSITY OF OKLAHOMA GRADUATE COLLEGE MACRONUTRIENTS SHAPE MICROBIAL COMMUNITIES, GENE EXPRESSION AND PROTEIN EVOLUTION A DISSERTATION SUBMITTED TO THE GRADUATE FACULTY in partial fulfillment of the requirements for the Degree of DOCTOR OF PHILOSOPHY By JOSHUA THOMAS COOPER Norman, Oklahoma 2017 MACRONUTRIENTS SHAPE MICROBIAL COMMUNITIES, GENE EXPRESSION AND PROTEIN EVOLUTION A DISSERTATION APPROVED FOR THE DEPARTMENT OF MICROBIOLOGY AND PLANT BIOLOGY BY ______________________________ Dr. Boris Wawrik, Chair ______________________________ Dr. J. Phil Gibson ______________________________ Dr. Anne K. Dunn ______________________________ Dr. John Paul Masly ______________________________ Dr. K. David Hambright ii © Copyright by JOSHUA THOMAS COOPER 2017 All Rights Reserved. iii Acknowledgments I would like to thank my two advisors Dr. Boris Wawrik and Dr. J. Phil Gibson for helping me become a better scientist and better educator. I would also like to thank my committee members Dr. Anne K. Dunn, Dr. K. David Hambright, and Dr. J.P. Masly for providing valuable inputs that lead me to carefully consider my research questions. I would also like to thank Dr. J.P. Masly for the opportunity to coauthor a book chapter on the speciation of diatoms. It is still such a privilege that you believed in me and my crazy diatom ideas to form a concise chapter in addition to learn your style of writing has been a benefit to my professional development. I’m also thankful for my first undergraduate research mentor, Dr. Miriam Steinitz-Kannan, now retired from Northern Kentucky University, who was the first to show the amazing wonders of pond scum. Who knew that studying diatoms and algae as an undergraduate would lead me all the way to a Ph.D. -
Old Woman Creek National Estuarine Research Reserve Management Plan 2011-2016
Old Woman Creek National Estuarine Research Reserve Management Plan 2011-2016 April 1981 Revised, May 1982 2nd revision, April 1983 3rd revision, December 1999 4th revision, May 2011 Prepared for U.S. Department of Commerce Ohio Department of Natural Resources National Oceanic and Atmospheric Administration Division of Wildlife Office of Ocean and Coastal Resource Management 2045 Morse Road, Bldg. G Estuarine Reserves Division Columbus, Ohio 1305 East West Highway 43229-6693 Silver Spring, MD 20910 This management plan has been developed in accordance with NOAA regulations, including all provisions for public involvement. It is consistent with the congressional intent of Section 315 of the Coastal Zone Management Act of 1972, as amended, and the provisions of the Ohio Coastal Management Program. OWC NERR Management Plan, 2011 - 2016 Acknowledgements This management plan was prepared by the staff and Advisory Council of the Old Woman Creek National Estuarine Research Reserve (OWC NERR), in collaboration with the Ohio Department of Natural Resources-Division of Wildlife. Participants in the planning process included: Manager, Frank Lopez; Research Coordinator, Dr. David Klarer; Coastal Training Program Coordinator, Heather Elmer; Education Coordinator, Ann Keefe; Education Specialist Phoebe Van Zoest; and Office Assistant, Gloria Pasterak. Other Reserve staff including Dick Boyer and Marje Bernhardt contributed their expertise to numerous planning meetings. The Reserve is grateful for the input and recommendations provided by members of the Old Woman Creek NERR Advisory Council. The Reserve is appreciative of the review, guidance, and council of Division of Wildlife Executive Administrator Dave Scott and the mapping expertise of Keith Lott and the late Steve Barry. -
A Study on Chlorophyceae of the Artificial Ponds and Lakes of the National Botanical Garden of Iran
A STUDY ON CHLOROPHYCEAE OF THE ARTIFICIAL PONDS AND LAKES OF THE NATIONAL BOTANICAL GARDEN OF IRAN T. Nejadsattari, Z. Shariatmadari and Z. Jamzad Nejadsattari, T., Z. Shariatmadari, and Z. Jamzad,.2006 01 01:.A study on chlorophyceae of the artificial ponds and lakes of National Botanical Garden of Iran . – Iran. Journ. Bot. 11 (2): 159-168. Tehran Five aquatic sites of National Botanical Garden of Iran monthly were sampled from December 2003 through November 2004. 68 genera and species of 10 families and 6 orders of the planktonic Chlorophyceae were identified. Among the families Desmidaceae with 22 genera and species showed the highest species richness. Scenedesmaceae (15 species) and Oocystaceae (14 species), Hydrodictyaceae (7 species), Ulotrichaceae (3 species), Zygnemataceae (2 species), Volvocaceae (2 species) and Cladophoraceae, Oedogoniaceae and Trentephliaceae each with 1 species respectively presented in the studied sites. High population densities of species were observed in the warm months. Taher Nejadsattari, Department of Plant Biology, Faculty of Basic Sciences, Islamic Azad University Science and Research Branch, Tehran. –Ziba Jamzad, Reasearch Institute of Forests and Rangelands, P. O. Box 13185- 116, Tehran, Iran. –Zeinab Shariatmadari, Department of Plant biology, Faculty of Basic Sciences, Islamic Azad University Science and Research Branch, Tehran. Keywords. Chlorophyceae, identification, Botanical garden, Iran. ﻣﻄﺎﻟﻌﻪاي در ﻣﻮرد ﺟﻠﺒﻜﻬﺎي ﺳﺒﺰ درﻳﺎﭼﻪﻫﺎ و ﺑﺮﻛﻪﻫﺎي ﺑﺎغ ﮔﻴﺎﻫﺸﻨﺎﺳﻲ ﻣﻠﻲ اﻳﺮان ﻃﺎﻫﺮ ﻧﮋاد ﺳﺘﺎري، زﻳﻨﺐ ﺷﺮﻳﻌﺘﻤﺪاري و زﻳﺒﺎ ﺟﻢ زاد در ﻃﻲ اﻳﻦ ﺗﺤﻘﻴﻖ ﺟﻠﺒﻜﻬﺎي ﺳﺒﺰ 5 ﺑﺮﻛﻪ ﻣﺼﻨﻮﻋﻲ در ﺑﺎغ ﮔﻴﺎﻫﺸﻨﺎﺳﻲ ﻣﻠﻲ اﻳﺮان ﺑﺎ ﻧﻤﻮﻧﻪﺑﺮداري ﻣﺎﻫﻴﺎﻧﻪ از آذر 1382 ﺗﺎ آﺑﺎن 1383 ﻣﻮرد ﻣﻄﺎﻟﻌﻪ و ﺷﻨﺎﺳﺎﻳﻲ ﻗﺮار ﮔﺮﻓﺘﻨﺪ. 68 ﺟﻨﺲ و ﮔﻮﻧﻪ ﻣﺘﻌﻠﻖ ﺑﻪ 10 ﺗﻴﺮه و 6 راﺳﺘﻪ از ﺟﻠﺒﻜﻬﺎي ﺳﺒﺰ ﺷﻨﺎﺳﺎﻳﻲ ﮔﺮدﻳﺪ. -
Mannitol Biosynthesis in Algae : More Widespread and Diverse Than Previously Thought
This is a repository copy of Mannitol biosynthesis in algae : more widespread and diverse than previously thought. White Rose Research Online URL for this paper: https://eprints.whiterose.ac.uk/113250/ Version: Accepted Version Article: Tonon, Thierry orcid.org/0000-0002-1454-6018, McQueen Mason, Simon John orcid.org/0000-0002-6781-4768 and Li, Yi (2017) Mannitol biosynthesis in algae : more widespread and diverse than previously thought. New Phytologist. pp. 1573-1579. ISSN 1469-8137 https://doi.org/10.1111/nph.14358 Reuse Items deposited in White Rose Research Online are protected by copyright, with all rights reserved unless indicated otherwise. They may be downloaded and/or printed for private study, or other acts as permitted by national copyright laws. The publisher or other rights holders may allow further reproduction and re-use of the full text version. This is indicated by the licence information on the White Rose Research Online record for the item. Takedown If you consider content in White Rose Research Online to be in breach of UK law, please notify us by emailing [email protected] including the URL of the record and the reason for the withdrawal request. [email protected] https://eprints.whiterose.ac.uk/ 1 Mannitol biosynthesis in algae: more widespread and diverse than previously thought. Thierry Tonon1,*, Yi Li1 and Simon McQueen-Mason1 1 Department of Biology, Centre for Novel Agricultural Products, University of York, Heslington, York, YO10 5DD, UK. * Author for correspondence: tel +44 1904328785; email [email protected] Key words: Algae, primary metabolism, mannitol biosynthesis, mannitol-1-phosphate dehydrogenase, mannitol-1-phosphatase, haloacid dehalogenase, histidine phosphatase, evolution of metabolic pathways. -
Permian–Triassic Non-Marine Algae of Gondwana—Distributions
Earth-Science Reviews 212 (2021) 103382 Contents lists available at ScienceDirect Earth-Science Reviews journal homepage: www.elsevier.com/locate/earscirev Review Article Permian–Triassic non-marine algae of Gondwana—Distributions, natural T affinities and ecological implications ⁎ Chris Maysa,b, , Vivi Vajdaa, Stephen McLoughlina a Swedish Museum of Natural History, Box 50007, SE-104 05 Stockholm, Sweden b Monash University, School of Earth, Atmosphere and Environment, 9 Rainforest Walk, Clayton, VIC 3800, Australia ARTICLE INFO ABSTRACT Keywords: The abundance, diversity and extinction of non-marine algae are controlled by changes in the physical and Permian–Triassic chemical environment and community structure of continental ecosystems. We review a range of non-marine algae algae commonly found within the Permian and Triassic strata of Gondwana and highlight and discuss the non- mass extinctions marine algal abundance anomalies recorded in the immediate aftermath of the end-Permian extinction interval Gondwana (EPE; 252 Ma). We further review and contrast the marine and continental algal records of the global biotic freshwater ecology crises within the Permian–Triassic interval. Specifically, we provide a case study of 17 species (in 13 genera) palaeobiogeography from the succession spanning the EPE in the Sydney Basin, eastern Australia. The affinities and ecological im- plications of these fossil-genera are summarised, and their global Permian–Triassic palaeogeographic and stra- tigraphic distributions are collated. Most of these fossil taxa have close extant algal relatives that are most common in freshwater, brackish or terrestrial conditions, and all have recognizable affinities to groups known to produce chemically stable biopolymers that favour their preservation over long geological intervals. -
Lateral Gene Transfer of Anion-Conducting Channelrhodopsins Between Green Algae and Giant Viruses
bioRxiv preprint doi: https://doi.org/10.1101/2020.04.15.042127; this version posted April 23, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 5 Lateral gene transfer of anion-conducting channelrhodopsins between green algae and giant viruses Andrey Rozenberg 1,5, Johannes Oppermann 2,5, Jonas Wietek 2,3, Rodrigo Gaston Fernandez Lahore 2, Ruth-Anne Sandaa 4, Gunnar Bratbak 4, Peter Hegemann 2,6, and Oded 10 Béjà 1,6 1Faculty of Biology, Technion - Israel Institute of Technology, Haifa 32000, Israel. 2Institute for Biology, Experimental Biophysics, Humboldt-Universität zu Berlin, Invalidenstraße 42, Berlin 10115, Germany. 3Present address: Department of Neurobiology, Weizmann 15 Institute of Science, Rehovot 7610001, Israel. 4Department of Biological Sciences, University of Bergen, N-5020 Bergen, Norway. 5These authors contributed equally: Andrey Rozenberg, Johannes Oppermann. 6These authors jointly supervised this work: Peter Hegemann, Oded Béjà. e-mail: [email protected] ; [email protected] 20 ABSTRACT Channelrhodopsins (ChRs) are algal light-gated ion channels widely used as optogenetic tools for manipulating neuronal activity 1,2. Four ChR families are currently known. Green algal 3–5 and cryptophyte 6 cation-conducting ChRs (CCRs), cryptophyte anion-conducting ChRs (ACRs) 7, and the MerMAID ChRs 8. Here we 25 report the discovery of a new family of phylogenetically distinct ChRs encoded by marine giant viruses and acquired from their unicellular green algal prasinophyte hosts. -
New Phylogenetic Hypotheses for the Core Chlorophyta Based on Chloroplast Sequence Data
ORIGINAL RESEARCH ARTICLE published: 17 October 2014 ECOLOGY AND EVOLUTION doi: 10.3389/fevo.2014.00063 New phylogenetic hypotheses for the core Chlorophyta based on chloroplast sequence data Karolina Fucíkovᡠ1, Frederik Leliaert 2,3, Endymion D. Cooper 4, Pavel Škaloud 5, Sofie D’Hondt 2, Olivier De Clerck 2, Carlos F. D. Gurgel 6, Louise A. Lewis 1, Paul O. Lewis 1, Juan M. Lopez-Bautista 3, Charles F. Delwiche 4 and Heroen Verbruggen 7* 1 Department of Ecology and Evolutionary Biology, University of Connecticut, Storrs, CT, USA 2 Phycology Research Group, Biology Department, Ghent University, Ghent, Belgium 3 Department of Biological Sciences, The University of Alabama, Tuscaloosa, AL, USA 4 Department of Cell Biology and Molecular Genetics and the Maryland Agricultural Experiment Station, University of Maryland, College Park, MD, USA 5 Department of Botany, Faculty of Science, Charles University in Prague, Prague, Czech Republic 6 School of Earth and Environmental Sciences, The University of Adelaide, Adelaide, SA, Australia 7 School of Botany, University of Melbourne, Melbourne, VIC, Australia Edited by: Phylogenetic relationships in the green algal phylum Chlorophyta have long been subject to Debashish Bhattacharya, Rutgers, debate, especially at higher taxonomic ranks (order, class). The relationships among three The State University of New Jersey, traditionally defined and well-studied classes, Chlorophyceae, Trebouxiophyceae, and USA Ulvophyceae are of particular interest, as these groups are species-rich and ecologically Reviewed by: Jinling Huang, East Carolina important worldwide. Different phylogenetic hypotheses have been proposed over the University, USA past two decades and the monophyly of the individual classes has been disputed on Cheong Xin Chan, The University of occasion. -
The Genome of Prasinoderma Coloniale Unveils the Existence of a Third Phylum Within Green Plants
Downloaded from orbit.dtu.dk on: Oct 10, 2021 The genome of Prasinoderma coloniale unveils the existence of a third phylum within green plants Li, Linzhou; Wang, Sibo; Wang, Hongli; Sahu, Sunil Kumar; Marin, Birger; Li, Haoyuan; Xu, Yan; Liang, Hongping; Li, Zhen; Cheng, Shifeng Total number of authors: 24 Published in: Nature Ecology & Evolution Link to article, DOI: 10.1038/s41559-020-1221-7 Publication date: 2020 Document Version Publisher's PDF, also known as Version of record Link back to DTU Orbit Citation (APA): Li, L., Wang, S., Wang, H., Sahu, S. K., Marin, B., Li, H., Xu, Y., Liang, H., Li, Z., Cheng, S., Reder, T., Çebi, Z., Wittek, S., Petersen, M., Melkonian, B., Du, H., Yang, H., Wang, J., Wong, G. K. S., ... Liu, H. (2020). The genome of Prasinoderma coloniale unveils the existence of a third phylum within green plants. Nature Ecology & Evolution, 4, 1220-1231. https://doi.org/10.1038/s41559-020-1221-7 General rights Copyright and moral rights for the publications made accessible in the public portal are retained by the authors and/or other copyright owners and it is a condition of accessing publications that users recognise and abide by the legal requirements associated with these rights. Users may download and print one copy of any publication from the public portal for the purpose of private study or research. You may not further distribute the material or use it for any profit-making activity or commercial gain You may freely distribute the URL identifying the publication in the public portal If you believe that this document breaches copyright please contact us providing details, and we will remove access to the work immediately and investigate your claim. -
Issn 2347-6893
ISSN 2347-6893 A comparison and phylogenetic analysis of the pyrenoid ultrastructure of three Oocystis species (Oocystaceae, Trebouxiophyceae, Chlorophyta) Feng Li, Xianghu Huang* and Changling Li Fisheries College of Guangdong Ocean University, Zhanjiang 524088, P. R. China [email protected] *Corresponding author e-mail: [email protected] [email protected] ABSTRACT The 18S rRNA gene sequences of three Oocystis species were determined and subjected to two different phylogenetic analysis algorithms. Phylogenetic analysis indicated that they all belong to Oocystaceae. However, the three strains were not members of a monophyletic cluster. New evidence that the genus Oocystis is paraphyletic is provided in this work. The pyrenoid ultrastructure of the three strains was studied using transmission electron microscopy (TEM). Different morphologies of pyrenoids can be distinguished as three types. Oocystis sp. had one pyrenoid surrounded by a sheath of starch consisting of four to six starch plates. The pyrenoid matrix was traversed by several tubular thylakoids. O. nephrocytioides contained two pyrenoids, with each pyrenoid being homogenous and surrounded by a thick, ring-like starch sheath. The thylakoids extend the length of the chloroplast but never traverse the pyrenoid matrix. No starch sheath pyrenoid has been found in Oocystis sp. FACHB 1429, which was traversed by two tubular thylakoids. These results suggest that different morphological features of the pyrenoids, including their associated starch sheath, are species- specific. Keywords Oocystis, Oocystis nephrocytioides, Oocystaceae, 18S rRNA, phylogeny, ultrastructure, pyrenoids, TEM, taxonomy Academic Discipline Microbiology SUBJECT CLASSIFICATION QR Council for Innovative Research Peer Review Research Publishing System Journal : Journal of Advances in Biology Vol. 6, No. -
The Biodiversity of Organic-Walled Eukaryotic Microfossils from the Tonian Visingsö Group, Sweden
Examensarbete vid Institutionen för geovetenskaper Degree Project at the Department of Earth Sciences ISSN 1650-6553 Nr 366 The Biodiversity of Organic-Walled Eukaryotic Microfossils from the Tonian Visingsö Group, Sweden Biodiversiteten av eukaryotiska mikrofossil med organiska cellväggar från Visingsö- gruppen (tonian), Sverige Corentin Loron INSTITUTIONEN FÖR GEOVETENSKAPER DEPARTMENT OF EARTH SCIENCES Examensarbete vid Institutionen för geovetenskaper Degree Project at the Department of Earth Sciences ISSN 1650-6553 Nr 366 The Biodiversity of Organic-Walled Eukaryotic Microfossils from the Tonian Visingsö Group, Sweden Biodiversiteten av eukaryotiska mikrofossil med organiska cellväggar från Visingsö- gruppen (tonian), Sverige Corentin Loron ISSN 1650-6553 Copyright © Corentin Loron Published at Department of Earth Sciences, Uppsala University (www.geo.uu.se), Uppsala, 2016 Abstract The Biodiversity of Organic-Walled Eukaryotic Microfossils from the Tonian Visingsö Group, Sweden Corentin Loron The diversification of unicellular, auto- and heterotrophic protists and the appearance of multicellular microorganisms is recorded in numerous Tonian age successions worldwide, including the Visingsö Group in southern Sweden. The Tonian Period (1000-720 Ma) was a time of changes in the marine environments with increasing oxygenation and a high input of mineral nutrients from the weathering continental margins to shallow shelves, where marine life thrived. This is well documented by the elevated level of biodiversity seen in global microfossil -
Biodiversity of Microscopic Green Algae from Desert Soil Crusts
Digital Commons @ Assumption University Honors Theses Honors Program 2020 Biodiversity of Microscopic Green Algae from Desert Soil Crusts Victoria Williamson Assumption College Follow this and additional works at: https://digitalcommons.assumption.edu/honorstheses Part of the Life Sciences Commons Recommended Citation Williamson, Victoria, "Biodiversity of Microscopic Green Algae from Desert Soil Crusts" (2020). Honors Theses. 69. https://digitalcommons.assumption.edu/honorstheses/69 This Honors Thesis is brought to you for free and open access by the Honors Program at Digital Commons @ Assumption University. It has been accepted for inclusion in Honors Theses by an authorized administrator of Digital Commons @ Assumption University. For more information, please contact [email protected]. BIODIVERSITY OF MICROSCOPIC GREEN ALGAE FROM DESERT SOIL CRUSTS Victoria Williamson Faculty Supervisor: Karolina Fučíková Natural Science Department A Thesis Submitted to Fulfill the Requirements of the Honors Program at Assumption College Spring 2020 Williamson 1 Abstract In the desert ecosystem, the ground is covered with soil crusts. Several organisms exist here, such as cyanobacteria, lichens, mosses, fungi, bacteria, and green algae. This most superficial layer of the soil contains several primary producers of the food web in this ecosystem, which stabilize the soil, facilitate plant growth, protect from water and wind erosion, and provide water filtration and nitrogen fixation. Researching the biodiversity of green algae in the soil crusts can provide more context about the importance of the soil crusts. Little is known about the species of green algae that live there, and through DNA-based phylogeny and microscopy, more can be understood. In this study, DNA was extracted from algal cultures newly isolated from desert soil crusts in New Mexico and California.