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Resolution of Deep Angiosperm Phylogeny Using Conserved Nuclear Genes and Estimates of Early Divergence Times
ARTICLE Received 24 Mar 2014 | Accepted 11 Aug 2014 | Published 24 Sep 2014 DOI: 10.1038/ncomms5956 OPEN Resolution of deep angiosperm phylogeny using conserved nuclear genes and estimates of early divergence times Liping Zeng1, Qiang Zhang2, Renran Sun1, Hongzhi Kong3, Ning Zhang1,4 & Hong Ma1,5 Angiosperms are the most successful plants and support human livelihood and ecosystems. Angiosperm phylogeny is the foundation of studies of gene function and phenotypic evolution, divergence time estimation and biogeography. The relationship of the five divergent groups of the Mesangiospermae (B99.95% of extant angiosperms) remains uncertain, with multiple hypotheses reported in the literature. Here transcriptome data sets are obtained from 26 species lacking sequenced genomes, representing each of the five groups: eudicots, monocots, magnoliids, Chloranthaceae and Ceratophyllaceae. Phylogenetic analyses using 59 carefully selected low-copy nuclear genes resulted in highly supported relationships: sisterhood of eudicots and a clade containing Chloranthaceae and Ceratophyllaceae, with magnoliids being the next sister group, followed by monocots. Our topology allows a re-examination of the evolutionary patterns of 110 morphological characters. The molecular clock estimates of Mesangiospermae diversification during the late to middle Jurassic correspond well to the origins of some insects, which may have been a factor facilitating early angiosperm radiation. 1 State Key Laboratory of Genetic Engineering and Collaborative Innovation Center for Genetics and Development, Ministry of Education Key Laboratoryof Biodiversity Sciences and Ecological Engineering, Institute of Plant Biology, Institute of Biodiversity Science, Center for Evolutionary Biology, School of Life Sciences, Fudan University, 220 Handan Road, Yangpu District, Shanghai 200433, China. 2 Guangxi Institute of Botany, Guangxi Zhuang Autonomous Region and the Chinese Academy of Sciences, Guilin 541006, China. -
Utilization of Complete Chloroplast Genomes for Phylogenetic Studies
Utilization of complete chloroplast genomes for phylogenetic studies Shairul Izan Binti Ramlee Thesis committee Promotor Prof. Dr R.G.F. Visser Professor of Plant Breeding Wageningen University Co-promotors Dr M.J.M. Smulders Senior researcher, Wageningen UR Plant Breeding Wageningen University & Research Dr T.J.A. Borm Researcher, Wageningen UR Plant Breeding Wageningen University & Research Other members Prof. Dr M.E. Schranz, Wageningen University Dr G.F. Sanchez Perez, Wageningen University Dr R. Vos, Naturalis Biodiversity Center, Leiden Dr R. van Velzen, Wageningen University This research was conducted under the auspices of the Graduate School of Production Ecology and Resource Conservation Utilization of complete chloroplast genomes for phylogenetic studies Shairul Izan Binti Ramlee Thesis submitted in fulfilment of the requirements for the degree of doctor at Wageningen University by the authority of the Rector Magnificus Prof. Dr A.P.J. Mol, in the presence of the Thesis Committee appointed by the Academic Board to be defended in public on Friday 28 October 2016 at 11 a.m. in the Aula. Shairul Izan Binti Ramlee Utilization of complete chloroplast genomes for phylogenetic studies 186 pages. PhD thesis, Wageningen University, Wageningen, NL (2016) With references, with summary in English ISBN: 978-94-6257-935-4 DOI: 10.18174/390196 Table of Contents Chapter 1: General Introduction………………………………………………………………...….1 Chapter 2: De novo assembly of complete chloroplast genomes from non-model species based on a k-mer frequency-based selection -
Phytogeographic Review of Vietnam and Adjacent Areas of Eastern Indochina L
KOMAROVIA (2003) 3: 1–83 Saint Petersburg Phytogeographic review of Vietnam and adjacent areas of Eastern Indochina L. V. Averyanov, Phan Ke Loc, Nguyen Tien Hiep, D. K. Harder Leonid V. Averyanov, Herbarium, Komarov Botanical Institute of the Russian Academy of Sciences, Prof. Popov str. 2, Saint Petersburg 197376, Russia E-mail: [email protected], [email protected] Phan Ke Loc, Department of Botany, Viet Nam National University, Hanoi, Viet Nam. E-mail: [email protected] Nguyen Tien Hiep, Institute of Ecology and Biological Resources of the National Centre for Natural Sciences and Technology of Viet Nam, Nghia Do, Cau Giay, Hanoi, Viet Nam. E-mail: [email protected] Dan K. Harder, Arboretum, University of California Santa Cruz, 1156 High Street, Santa Cruz, California 95064, U.S.A. E-mail: [email protected] The main phytogeographic regions within the eastern part of the Indochinese Peninsula are delimited on the basis of analysis of recent literature on geology, geomorphology and climatology of the region, as well as numerous recent literature information on phytogeography, flora and vegetation. The following six phytogeographic regions (at the rank of floristic province) are distinguished and outlined within eastern Indochina: Sikang-Yunnan Province, South Chinese Province, North Indochinese Province, Central Annamese Province, South Annamese Province and South Indochinese Province. Short descriptions of these floristic units are given along with analysis of their floristic relationships. Special floristic analysis and consideration are given to the Orchidaceae as the largest well-studied representative of the Indochinese flora. 1. Background The Socialist Republic of Vietnam, comprising the largest area in the eastern part of the Indochinese Peninsula, is situated along the southeastern margin of the Peninsula. -
The Orchid Society of Karnataka (TOSKAR) Newsletter – June 2016 1
The Orchid Society of Karnataka (TOSKAR) Newsletter – June 2016 1 The Orchid Society of Karnataka (TOSKAR) Newsletter – June 2016 2 The Orchid Society of Karnataka (TOSKAR) Newsletter – June 2016 3 NAGESHWAR’S JOURNEY FROM ONION TO ORCHIDS Dr N. Shakuntala Manay Here is Nagesh’s story, the first recipient of TOSKAR Rolling Shield for the Best Orchid. His interest in growing plants started as a child of eight when he would pick up sprouting onions from Mom’s kitchen onion and plant them in the yard and watched them grow into green leeks. This got him into the hobby to grow vegetables. By this time he was 14. Later he turned to growing foliage plants like succulents, Anthuriums and Cacti. Thus he dared to enter into annual shows at Lalbagh and won many prizes. In “small homes garden” categories he won eight awards from Urban Art Commission such as “Best Maintained Building & Garden” “Pride of Bangalore” “Role of Honour” etc. Ex- commissioners of Bangalore City Corporation Late N. Laxman Rao and Late Mr. Parthsarathy would visit his house as Judges. He received these prestigious prizes amidst distinguished guests and dignitaries at Rajbhavan. Trophies gathered so fast that there was no place for them at home. Twenty years ago he got one orchid from Indo American Nursery. Thus he began collecting orchids from Kerala, North East India and Western Ghats. Now on his terrace of 800 sq ft he has 1500 orchids! Among these Dracula Orchid (Monkey face) which grows in cloud mountains of Mexico, Central America and Colombia is one of his special collections, and more than 15 varieties of Carnivorous Plants and many Tillandsias also add to his collection. -
Index Sorted by Title
Index sorted by Title Volume Issue Year Article Title Author Key Words 31 5 1967 12th Western Orchid Congress Jefferies, George Western Orchid Congress 31 5 1967 12th Western Orchid Congress — Photo Flashes Philpott, R. G. Western Orchid Congress 12th World Orchid Conference ... March 1987, 51 4 1987 Eilau, William World Orchid Conference, Tokyo Tokyo, Japan 13th World Orchid Conference, Auckland, New World Orchid Conference, New 54 2 1990 Eilau, William Zealand Zealand 14th World Orchid Conference, Glascow, 57 3 1993 Hetherington, Ernest World Orchid Conference, scotland Scotland, April 26-May 1, 1993, The 1992 Volume of the Orchid Digest is Dedicated 56 1 1992 in Memoriam to D. George Morel (1926-1973), Hetherington, Ernest history, George Morel The 58 4 1994 1994 Orchid Digest Research Grant Digest Staff 1994 orchid, research, grant 1995 Orchid Digest Dec Dedicated to Herb 59 1 1995 Digest Staff Dedication, Herb Hager Hager 72 2 2008 19th World Orchid Conference Hersch, Helen world orchid conference, 19th 2018 Paphiopedilum Guild and the Second 2018, paphiopedilum guild, second 82 2 2018 International World Slipper Orchid Conference Sorokowsky, David international world slipper orchid, Hilo, Hawaii conference 80 3 2016 22nd World Orchid Conference Pridgeon, Alec 22nd World Orchid Conference 84 4 2020 A Checklist of Phramipedium Species Cervera, Frank checklist, phragmipedium 84 3 2020 A New Color Forma for Vanda curvifolia Koopowitz, Harold vanda, curvifolia, new color form A New Species of Lepanthes (Orchidaceae: Larson, Bruno, Portilla, Jose, Medina 85 2 2021 new species, Lepanthes, Ecuador Pleurothallidinae) from South East Ecuador Hugo A New Species of Pleurothallopsis new species, pleurothallopsis, 82 1 2018 (Epidendreae, Epidendroideae, Orchidaceae): Matthews, Luke M. -
CITES Orchids Appendix I Checklist
CITES Appendix I Orchid Checklist For the genera: Paphiopedilum and Phragmipedium And the species: Aerangis ellisii, Cattleya jongheana, Cattleya lobata, Dendrobium cruentum, Mexipedium xerophyticum, Peristeria elata and Renanthera imschootiana CITES Appendix I Orchid Checklist For the genera: Paphiopedilum and Phragmipedium And the species: Aerangis ellisii, Cattleya jongheana, Cattleya lobata, Dendrobium cruentum, Mexipedium xerophyticum, Peristeria elata and Renanthera imschootiana Second version Published July 2019 First version published December 2018 Compiled by: Rafa¨elGovaerts1, Aude Caromel2, Sonia Dhanda1, Frances Davis2, Alyson Pavitt2, Pablo Sinovas2 & Valentina Vaglica1 Assisted by a selected panel of orchid experts 1 Royal Botanic Gardens, Kew 2 United Nations Environment World Conservation Monitoring Centre (UNEP-WCMC) Produced with the financial support of the CITES Secretariat and the European Commission Citation: Govaerts R., Caromel A., Dhanda S., Davis F., Pavitt A., Sinovas P., & Vaglica V. 2019. CITES Appendix I Orchid Checklist: Second Version. Royal Botanic Gardens, Kew, Surrey, and UNEP-WCMC, Cambridge. The geographical designations employed in this book do not imply the expression of any opinion whatsoever on the part of UN Environment, the CITES Secretariat, the European Commission, contributory organisations or editors, concerning the legal status of any country, territory or area, or concerning the delimitation of its frontiers or boundaries. Acknowledgements The compilers wish to thank colleagues at the Royal Botanic Gardens, Kew (RBG Kew) and United Nations Environment World Conservation Monitoring Centre (UNEP-WCMC). We appreciate the assistance of Heather Lindon and Dr. Helen Hartley for their work on the International Plants Names Index (IPNI), the backbone of the World Checklist of Selected Plant Families. We appreciate the guidance and advice of nomenclature specialist H. -
(Paphiopedilum Niveum (Rchb.F.) Stein) Sutthinut Soonthornk
In Vitro Propagation and Cryopreservation of Lady’s Slipper Orchid (Paphiopedilum niveum (Rchb.f.) Stein) Sutthinut Soonthornkalump A Thesis Submitted in Fulfillment of the Requirements for the Degree of Doctor of Philosophy in Biology Prince of Songkla University 2019 Copyright of Prince of Songkla University i In Vitro Propagation and Cryopreservation of Lady’s Slipper Orchid (Paphiopedilum niveum (Rchb.f.) Stein) Sutthinut Soonthornkalump A Thesis Submitted in Fulfillment of the Requirements for the Degree of Doctor of Philosophy in Biology Prince of Songkla University 2019 Copyright of Prince of Songkla University ii Thesis Title In Vitro Propagation and Cryopreservation of Lady’s Slipper Orchid (Paphiopedilum niveum (Rchb.f.) Stein) Author Mr. Sutthinut Soonthornkalump Major Program Biology Major Advisor Examining Committee: ……………………………………… ..………………………….Chairperson (Assoc. Prof. Dr. Upatham Meesawat) (Assoc. Prof. Dr. Kanchit Thammasiri) ..…………………………..Committee (Assoc. Prof. Dr. Upatham Meesawat) Co-advisor ……………………………………… ..…………………………..Committee (Asst. Prof. Dr. Korakot Nakkanong) (Prof. Dr. Sompong Te-chato) ……………………………………… ..…………………………..Committee (Dr. Shin-ichi Yamamoto) (Asst. Prof. Dr. Korakot Nakkanong) ..…………………………..Committee (Dr. Shin-ichi Yamamoto) The Graduate School, Prince of Songkla University, has approved this thesis as fulfillment of the requirements for the Doctor of Philosophy Degree in Biology. ………………………………………. (Prof. Dr. Damrongsak Faroongsarng) Dean of Graduate School iii This is to certify that the work here submitted is the results of candidate’s own investigations. Due acknowledgement has been made of any assistance received. ….…………………………..Signature (Assoc. Prof. Dr. Upatham Meesawat) Major Advisor ……………………………...Signature (Mr. Sutthinut Soonthornkalump) Candidate iv I hereby certify that this work has not already been accepted in substance for any degree, and is not being concurrently submitted in candidature for any degree. -
Index Sorted by Title
Index sorted by Title Volume Issue Year Article Title Author Key Words 31 5 1967 12th Western Orchid Congress Jefferies, George Western Orchid Congress 31 5 1967 12th Western Orchid Congress — Photo Flashes Philpott, R. G. Western Orchid Congress 12th World Orchid Conference ... March 1987, 51 4 1987 Eilau, William World Orchid Conference, Tokyo Tokyo, Japan 13th World Orchid Conference, Auckland, New World Orchid Conference, New 54 2 1990 Eilau, William Zealand Zealand 14th World Orchid Conference, Glascow, 57 3 1993 Hetherington, Ernest World Orchid Conference, scotland Scotland, April 26-May 1, 1993, The 1992 Volume of the Orchid Digest is Dedicated 56 1 1992 in Memoriam to D. George Morel (1926-1973), Hetherington, Ernest history, George Morel The 58 4 1994 1994 Orchid Digest Research Grant Digest Staff 1994 orchid, research, grant 59 1 1995 1995 Orchid Digest Dec Dedicated to Herb Hager Digest Staff Dedication, Herb Hager 72 2 2008 19th World Orchid Conference Hersch, Helen world orchid conference, 19th 2018 Paphiopedilum Guild and the Second 2018, paphiopedilum guild, second 82 2 2018 International World Slipper Orchid Conference Sorokowsky, David international world slipper orchid, Hilo, Hawaii conference 80 3 2016 22nd World Orchid Conference Pridgeon, Alec 22nd World Orchid Conference 84 4 2020 A Checklist of Phramipedium Species Cervera, Frank checklist, phragmipedium 84 3 2020 A New Color Forma for Vanda curvifolia Koopowitz, Harold vanda, curvifolia, new color form A New Species of Pleurothallopsis (Epidendreae, new species, pleurothallopsis, 82 1 2018 Epidendroideae, Orchidaceae): Pleurothallopsis Matthews, Luke M. alphonsiana alphonsiana 82 3 2018 A Visit to Colombian Cattleyas Popper, Helmut H. -
CITES and Slipper Orchids
CITES and Slipper Orchids An introduction to slipper orchids covered by the Convention on International Trade in Endangered Species Written by H. Noel McGough, David L. Roberts, Chris Brodie and Jenny Kowalczyk Royal Botanic Gardens, Kew United Kingdom The Board of Trustees, Royal Botanic Gardens, Kew 2006 © The Board of Trustees of the Royal Botanic Gardens, Kew 2006 All rights reserved. No part of this publication may be reproduced, stored in a retrieval system, or transmitted, in any form, or by any means, electronic, mechanical, photocopying, recording or otherwise, without written permission of the publisher unless in accordance with the provisions of the Copyright Designs and Patents Act 1988. First published in 2006 by Royal Botanic Gardens, Kew Richmond, Surrey, TW9 3AB, UK www.kew.org ISBN 1-84246-128-1 For information or to purchase Kew titles please visit www.kewbooks.com or email [email protected] Cover image: © Royal Botanic Gardens, Kew CONTENTS Introduction ..................................................................................................... i Acknowledgements ........................................................................................ ii How to Use this Presentation Pack ............................................................... iii References and Resources ........................................................................ iv-ix Slide Index ................................................................................................. x-xi Slides and speaker’s notes ....................................................................... -
[Paphiopedilum Niveum (Rchb.F.) Stein] Using V Cryo-Plate Method
วารสารพืชศาสตร์สงขลานครินทร์ ปีที่ 6 ฉบับที่ 4 (ตุลาคม-ธันวาคม): 10-18, 2562 Songklanakarin Journal of Plant Science, Vol. 6, No. 4 (October-December): 10-18, 2019 Research article The Investigation of Condition for Cryopreservation of Snow-White Venus’s Slipper Orchid Protocorm [Paphiopedilum niveum (Rchb.f.) Stein] using V cryo-plate Method Soonthornkalump, S.1* Yamamoto, S.2 Nakkanong, K.3 and Meesawat, U.1 1 Department of Biology, Faculty of Science, Prince of Songkla University, Kho Hong, Hat Yai, Songkhla, Thailand, 90110 2 Genetic Resources Center, National Agriculture and Food Research Organization (NARO), 2-1-2 Kanondai, Tsukuba, Ibaraki, Japan, 305-8518 3 Department of Plant Science, Faculty of Natural Resources, Prince of Songkla University, Kho Hong, Hat Yai, Songkhla, Thailand, 90110 * Corresponding author: [email protected] Received 26 April 2019; Revised 24 May 2019; Accepted 11 June 2019 Abstract Paphiopedilum niveum (Rchb.f.) Stein is native orchid to Southern Thailand which has been considered as an endangered species. The over collection decreased its wild population, so conservation of its genetic material is needed. The cryopreservation is efficient long term storage method. The objective of this study focused on the investigation of sucrose concentration at the preculture step and V cryo-plate protocol development to cryopreserved protocorm of P. niveum. In order to investigate the optimal sucrose concentration in the preculture medium , two-month-old protocorms were precultured in modified Vacin and Went medium (MVW) containing 0.058, 0.2, 0.4, 0.6 and 0.8 M sucrose for 24 h. The viability determination was tested by TTC assay and anatomical observation. -
Effects of Natural Additives on Asymbiotic Seed Germination and Growth of Endangered Lady’S Slipper Orchid: Paphiopedilum Callosum Var
108 109 Effects of Natural Additives on Asymbiotic Seed Germination and Growth of Endangered Lady’s Slipper Orchid: Paphiopedilum callosum var. sublaeve ผลของส�รจ�กธรรมช�ติต่อก�รงอกของเมล็ดและก�รเจริญเติบโตของกล้วยไม้ รองเท้�น�รีม่วงสงขล� (Paphiopedilum callosum var. sublaeve) นรารัตน์ วัฒนาพันธ์1, จรัสศรี นวลศรี2, อุปถัมภ์ มีสวัสดิ์1 Nararatn Wattanapan1, Charassri Nualsri2, Upatham Meesawat1 บทคัดย่อ รองเท้านารีม่วงสงขลา (Paphiopedilum callosum var. sublaeve) เป็นกล้วยไม้รองเท้านารีประจำาถิ่นที่อยู่ทาง ภาคใต้ของไทย ซึ่งเป็นพืชใกล้สูญพันธุ์ จึงถูกจัดให้อยู่ในบัญชีแนบท้ายหมายเลข 1 ตามอนุสัญญาไซเตส การทดลองนี้ศึกษา อิทธิพลของสารจากธรรมชาติ คือ กรดไฮยาลูโรนิค (HA) และไคโตซาน ที่มีต่อการงอกของเมล็ด การเจริญของโพรโทคอร์ม และการเพิ่มจำานวนยอดของรองเท้านารีม่วงสงขลา โดยเพาะเลี้ยงเมล็ดในอาหารเหลวสูตร MVW ที่มี HA ความเข้มข้น 0, 0.01, 0.1 และ 1.0 มก/ลิตร หรือไคโตซานความเข้มข้น 0, 1, 5 และ 10 มก/ลิตร พบว่า เมล็ดเริ่มงอกภายใน 45 วัน มีค่า อัตราการงอกสูงสุด 8.34±1.01%, ค่าดัชนีการงอกสูงสุด 0.16±0.02, และอัตราการเกิดโพรโทคอร์มสูงสุด 4.28±0.96% เมื่อ เพาะเลี้ยงในอาหารเหลวสูตร MVW ที่มี HA ความเข้มข้น 0.1 มก/ลิตร อย่างไรก็ตาม อาหารวุ้นสูตร MVW ที่มีไคโตซาน ความเข้มข้น 1.0 มก/ลิตร เป็นอาหารที่มีความเหมาะสมต่อการเจริญของโพรโทคอร์มมากที่สุด เนื่องจากให้ค่าอัตราการงอกใน ระยะ C สูงสุด 1.93±0.35% และโพรโทคอร์มที่ได้มีสีเขียวและแข็งแรง ส่วนการเพาะเลี้ยงบนอาหารวุ้นสูตร MMS ที่มี HA ความเข้มข้น 1.0 มก/ลิตร พบว่ามีจำานวนการเกิดยอดสูงสุด 3.22±0.36 ยอด/โพรโทคอร์ม และอัตราการเกิดยอดสูงสุด 100% จากนั้นย้ายต้นที่ได้ไปเพาะเลี้ยงในอาหารวุ้นสูตร MMS และย้ายลงปลูกในกระถางที่มีสแฟคนั่มมอสไปอนุบาลในเรือนเพาะชำาเป็น -
Genetic Diversity and Identification of Vietnamese Paphiopedilum
biology Article Genetic Diversity and Identification of Vietnamese Paphiopedilum Species Using DNA Sequences Huyen-Trang Vu 1,2, Quoc-Luan Vu 3, Thanh-Diem Nguyen 1, Ngan Tran 2 , Thanh-Cong Nguyen 1, Phuong-Nam Luu 1, Duy-Duong Tran 4, Truong-Khoa Nguyen 4 and Ly Le 2,* 1 Faculty of Biotechnology, Nguyen-Tat-Thanh University, 298A-300A Nguyen-Tat-Thanh Street, District 04, Hochiminh City 700000, Vietnam; [email protected] (H.-T.V.); [email protected] (T.-D.N.); [email protected] (T.-C.N.); [email protected] (P.-N.L.) 2 Faculty of Biotechnology, International University—Vietnam National University, Linh Trung Ward, Thu Duc District, Hochiminh City 700000, Vietnam; [email protected] 3 Tay Nguyen Institute for Scientific Research, Vietnam Academy of Science and Technology, 116 Xo Viet Nghe Tinh, Ward 7, Da Lat City, Lam Dong province 66000, Vietnam; [email protected] 4 Agricultural Genetics Institute, Pham Van Dong Street, Hanoi 100000, Vietnam; [email protected] (D.-D.T.); [email protected] (T.-K.N.) * Correspondence: [email protected]; Tel.: +84-90-657-88-36 Received: 14 November 2019; Accepted: 20 December 2019; Published: 31 December 2019 Abstract: Paphiopedilum is among the most popular ornamental orchid genera due to its unique slipper flowers and attractive leaf coloration. Most of the Paphiopedilum species are in critical danger due to over-exploitation. They were listed in Appendix I of the Convention on International Trade in Endangered Species of Wild Fauna and Flora, which prevents their being traded across borders. While most Paphiopedilum species are distinctive, owing to their respective flowers, their vegetative features are more similar and undistinguished.