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Biol. Eduardo Palacio Prez Estudiante De La Maestría En Ecología Y Pesquerías Universidad Veracruzana P R E S E N T E
Universidad Veracruzana Dirección General de Investigaciones Instituto de Ciencias Marinas y Pesquerías BIOL. EDUARDO PALACIO PREZ ESTUDIANTE DE LA MAESTRÍA EN ECOLOGÍA Y PESQUERÍAS UNIVERSIDAD VERACRUZANA P R E S E N T E INSTITUTO DE CIENCIAS MARINAS Y PESQUERÍAS, Habiendo sido debidamente revisado y aceptado el trabajo escrito de su tesis denominada U.V. “Diversidad funcional de peces arrecifales del Gran Caribe”, y habiendo conseguido los votos Calle Hidalgo No. 617 necesarios por parte de su comité tutoral coincidiendo en cuanto a que tanto el contenido, como el Colonia Río Jamapa, formato de este trabajo es satisfactorio como prueba escrita para sustentar su e amen !nal de C P 94290, Boca del Río, posgrado de "#$%&'# $( $CO*)G+# , -$%./$'+#% se le autoriza a usted presentar la versi1n Veracruz, electr1nica !nal de su trabajo2 México Teléfonos (229) 956 70 70 %in otro particular, me es grato reiterarle la seguridad de mi m3s distinguida consideración2 956 72 27 COORDINACION DE POSGRADO EN ECOLOGÍA Y PESQUERIAS, U.V. Mar Mediterráneo No. 314 #&$(&#"$(&$ Fracc. Costa Verde CP 94294 “*4% DE 5$'#CRUZ7 #'&$, CI$NCI#, */6” Boca del Río, 8oca del '9o, 5er2 diciembre :; del <=<= Veracruz, México Teléfono (229) 202 28 28 Dr. Javier Bello Pi e!a Dire"#or {Bermu Universidad Veracruzana Universidad Veracruzana Instituto de Ciencias Marinas y Pesquerías MAESTRÍA EN ECOLOGÍA Y PESQUERÍAS Diversidad funcional de peces arrecifales del Gran Caribe TESIS PARA OBTENER EL GRADO ACADÉMICO DE MAESTRO EN ECOLOGÍA Y PESQUERÍAS PRESENTA Biol. Eduardo Palacio Pérez COMITÉ TUTORAL Director: Dr. Horacio Pérez España Director Asesores: Dra. Vanessa Francisco Ramos Asesora Boca del Río, Veracruz 1 Agradecimientos Quiero agradecer en primera instancia a mi director de tesis el Dr. -
Reef Fish Biodiversity in the Florida Keys National Marine Sanctuary Megan E
University of South Florida Scholar Commons Graduate Theses and Dissertations Graduate School November 2017 Reef Fish Biodiversity in the Florida Keys National Marine Sanctuary Megan E. Hepner University of South Florida, [email protected] Follow this and additional works at: https://scholarcommons.usf.edu/etd Part of the Biology Commons, Ecology and Evolutionary Biology Commons, and the Other Oceanography and Atmospheric Sciences and Meteorology Commons Scholar Commons Citation Hepner, Megan E., "Reef Fish Biodiversity in the Florida Keys National Marine Sanctuary" (2017). Graduate Theses and Dissertations. https://scholarcommons.usf.edu/etd/7408 This Thesis is brought to you for free and open access by the Graduate School at Scholar Commons. It has been accepted for inclusion in Graduate Theses and Dissertations by an authorized administrator of Scholar Commons. For more information, please contact [email protected]. Reef Fish Biodiversity in the Florida Keys National Marine Sanctuary by Megan E. Hepner A thesis submitted in partial fulfillment of the requirements for the degree of Master of Science Marine Science with a concentration in Marine Resource Assessment College of Marine Science University of South Florida Major Professor: Frank Muller-Karger, Ph.D. Christopher Stallings, Ph.D. Steve Gittings, Ph.D. Date of Approval: October 31st, 2017 Keywords: Species richness, biodiversity, functional diversity, species traits Copyright © 2017, Megan E. Hepner ACKNOWLEDGMENTS I am indebted to my major advisor, Dr. Frank Muller-Karger, who provided opportunities for me to strengthen my skills as a researcher on research cruises, dive surveys, and in the laboratory, and as a communicator through oral and presentations at conferences, and for encouraging my participation as a full team member in various meetings of the Marine Biodiversity Observation Network (MBON) and other science meetings. -
Reef Sponges of the Genus Agelas (Porifera: Demospongiae) from the Greater Caribbean
Zootaxa 3794 (3): 301–343 ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ Article ZOOTAXA Copyright © 2014 Magnolia Press ISSN 1175-5334 (online edition) http://dx.doi.org/10.11646/zootaxa.3794.3.1 http://zoobank.org/urn:lsid:zoobank.org:pub:51852298-F299-4392-9C89-A6FD14D3E1D0 Reef sponges of the genus Agelas (Porifera: Demospongiae) from the Greater Caribbean FERNANDO J. PARRA-VELANDIA1,2, SVEN ZEA2,4 & ROB W. M. VAN SOEST3 1St John's Island Marine Laboratory, Tropical Marine Science Institute (TMSI), National University of Singapore, 18 Kent Ridge Road, Singapore 119227. E-mail: [email protected] 2Universidad Nacional de Colombia, Sede Caribe, Centro de Estudios en Ciencias del Mar—CECIMAR; c/o INVEMAR, Calle 25 2- 55, Rodadero Sur, Playa Salguero, Santa Marta, Colombia. E-mail: [email protected] 3Netherlands Centre for Biodiversity Naturalis, P.O.Box 9517 2300 RA Leiden, The Netherlands. E-mail: [email protected] 4Corresponding author Table of contents Abstract . 301 Introduction . 302 The genus Agelas in the Greater Caribbean . 302 Material and methods . 303 Classification . 304 Phylum Porifera Grant, 1835 . 304 Class Demospongiae Sollas, 1875 . 304 Order Agelasida Hartman, 1980 . 304 Family Agelasidae Verrill, 1907 . 304 Genus Agelas Duchassaing & Michelotti, 1864 . 304 Agelas dispar Duchassaing & Michelotti, 1864 . 306 Agelas cervicornis (Schmidt, 1870) . 311 Agelas wiedenmayeri Alcolado, 1984. 313 Agelas sceptrum (Lamarck, 1815) . 315 Agelas dilatata Duchassaing & Michelotti, 1864 . 316 Agelas conifera (Schmidt, 1870). 318 Agelas tubulata Lehnert & van Soest, 1996 . 321 Agelas repens Lehnert & van Soest, 1998. 324 Agelas cerebrum Assmann, van Soest & Köck, 2001. 325 Agelas schmidti Wilson, 1902 . -
Benthic Invertebrate Community Monitoring and Indicator Development for Barnegat Bay-Little Egg Harbor Estuary
July 15, 2013 Final Report Project SR12-002: Benthic Invertebrate Community Monitoring and Indicator Development for Barnegat Bay-Little Egg Harbor Estuary Gary L. Taghon, Rutgers University, Project Manager [email protected] Judith P. Grassle, Rutgers University, Co-Manager [email protected] Charlotte M. Fuller, Rutgers University, Co-Manager [email protected] Rosemarie F. Petrecca, Rutgers University, Co-Manager and Quality Assurance Officer [email protected] Patricia Ramey, Senckenberg Research Institute and Natural History Museum, Frankfurt Germany, Co-Manager [email protected] Thomas Belton, NJDEP Project Manager and NJDEP Research Coordinator [email protected] Marc Ferko, NJDEP Quality Assurance Officer [email protected] Bob Schuster, NJDEP Bureau of Marine Water Monitoring [email protected] Introduction The Barnegat Bay ecosystem is potentially under stress from human impacts, which have increased over the past several decades. Benthic macroinvertebrates are commonly included in studies to monitor the effects of human and natural stresses on marine and estuarine ecosystems. There are several reasons for this. Macroinvertebrates (here defined as animals retained on a 0.5-mm mesh sieve) are abundant in most coastal and estuarine sediments, typically on the order of 103 to 104 per meter squared. Benthic communities are typically composed of many taxa from different phyla, and quantitative measures of community diversity (e.g., Rosenberg et al. 2004) and the relative abundance of animals with different feeding behaviors (e.g., Weisberg et al. 1997, Pelletier et al. 2010), can be used to evaluate ecosystem health. Because most benthic invertebrates are sedentary as adults, they function as integrators, over periods of months to years, of the properties of their environment. -
1 Exon Probe Sets and Bioinformatics Pipelines for All Levels of Fish Phylogenomics
bioRxiv preprint doi: https://doi.org/10.1101/2020.02.18.949735; this version posted February 19, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 1 Exon probe sets and bioinformatics pipelines for all levels of fish phylogenomics 2 3 Lily C. Hughes1,2,3,*, Guillermo Ortí1,3, Hadeel Saad1, Chenhong Li4, William T. White5, Carole 4 C. Baldwin3, Keith A. Crandall1,2, Dahiana Arcila3,6,7, and Ricardo Betancur-R.7 5 6 1 Department of Biological Sciences, George Washington University, Washington, D.C., U.S.A. 7 2 Computational Biology Institute, Milken Institute of Public Health, George Washington 8 University, Washington, D.C., U.S.A. 9 3 Department of Vertebrate Zoology, National Museum of Natural History, Smithsonian 10 Institution, Washington, D.C., U.S.A. 11 4 College of Fisheries and Life Sciences, Shanghai Ocean University, Shanghai, China 12 5 CSIRO Australian National Fish Collection, National Research Collections of Australia, 13 Hobart, TAS, Australia 14 6 Sam Noble Oklahoma Museum of Natural History, Norman, O.K., U.S.A. 15 7 Department of Biology, University of Oklahoma, Norman, O.K., U.S.A. 16 17 *Corresponding author: Lily C. Hughes, [email protected]. 18 Current address: Department of Organismal Biology and Anatomy, University of Chicago, 19 Chicago, IL. 20 21 Keywords: Actinopterygii, Protein coding, Systematics, Phylogenetics, Evolution, Target 22 capture 23 1 bioRxiv preprint doi: https://doi.org/10.1101/2020.02.18.949735; this version posted February 19, 2020. -
Taxonomic Checklist of CITES Listed Coral Species Part II
CoP16 Doc. 43.1 (Rev. 1) Annex 5.2 (English only / Únicamente en inglés / Seulement en anglais) Taxonomic Checklist of CITES listed Coral Species Part II CORAL SPECIES AND SYNONYMS CURRENTLY RECOGNIZED IN THE UNEP‐WCMC DATABASE 1. Scleractinia families Family Name Accepted Name Species Author Nomenclature Reference Synonyms ACROPORIDAE Acropora abrolhosensis Veron, 1985 Veron (2000) Madrepora crassa Milne Edwards & Haime, 1860; ACROPORIDAE Acropora abrotanoides (Lamarck, 1816) Veron (2000) Madrepora abrotanoides Lamarck, 1816; Acropora mangarevensis Vaughan, 1906 ACROPORIDAE Acropora aculeus (Dana, 1846) Veron (2000) Madrepora aculeus Dana, 1846 Madrepora acuminata Verrill, 1864; Madrepora diffusa ACROPORIDAE Acropora acuminata (Verrill, 1864) Veron (2000) Verrill, 1864; Acropora diffusa (Verrill, 1864); Madrepora nigra Brook, 1892 ACROPORIDAE Acropora akajimensis Veron, 1990 Veron (2000) Madrepora coronata Brook, 1892; Madrepora ACROPORIDAE Acropora anthocercis (Brook, 1893) Veron (2000) anthocercis Brook, 1893 ACROPORIDAE Acropora arabensis Hodgson & Carpenter, 1995 Veron (2000) Madrepora aspera Dana, 1846; Acropora cribripora (Dana, 1846); Madrepora cribripora Dana, 1846; Acropora manni (Quelch, 1886); Madrepora manni ACROPORIDAE Acropora aspera (Dana, 1846) Veron (2000) Quelch, 1886; Acropora hebes (Dana, 1846); Madrepora hebes Dana, 1846; Acropora yaeyamaensis Eguchi & Shirai, 1977 ACROPORIDAE Acropora austera (Dana, 1846) Veron (2000) Madrepora austera Dana, 1846 ACROPORIDAE Acropora awi Wallace & Wolstenholme, 1998 Veron (2000) ACROPORIDAE Acropora azurea Veron & Wallace, 1984 Veron (2000) ACROPORIDAE Acropora batunai Wallace, 1997 Veron (2000) ACROPORIDAE Acropora bifurcata Nemenzo, 1971 Veron (2000) ACROPORIDAE Acropora branchi Riegl, 1995 Veron (2000) Madrepora brueggemanni Brook, 1891; Isopora ACROPORIDAE Acropora brueggemanni (Brook, 1891) Veron (2000) brueggemanni (Brook, 1891) ACROPORIDAE Acropora bushyensis Veron & Wallace, 1984 Veron (2000) Acropora fasciculare Latypov, 1992 ACROPORIDAE Acropora cardenae Wells, 1985 Veron (2000) CoP16 Doc. -
Sharkcam Fishes
SharkCam Fishes A Guide to Nekton at Frying Pan Tower By Erin J. Burge, Christopher E. O’Brien, and jon-newbie 1 Table of Contents Identification Images Species Profiles Additional Info Index Trevor Mendelow, designer of SharkCam, on August 31, 2014, the day of the original SharkCam installation. SharkCam Fishes. A Guide to Nekton at Frying Pan Tower. 5th edition by Erin J. Burge, Christopher E. O’Brien, and jon-newbie is licensed under the Creative Commons Attribution-Noncommercial 4.0 International License. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc/4.0/. For questions related to this guide or its usage contact Erin Burge. The suggested citation for this guide is: Burge EJ, CE O’Brien and jon-newbie. 2020. SharkCam Fishes. A Guide to Nekton at Frying Pan Tower. 5th edition. Los Angeles: Explore.org Ocean Frontiers. 201 pp. Available online http://explore.org/live-cams/player/shark-cam. Guide version 5.0. 24 February 2020. 2 Table of Contents Identification Images Species Profiles Additional Info Index TABLE OF CONTENTS SILVERY FISHES (23) ........................... 47 African Pompano ......................................... 48 FOREWORD AND INTRODUCTION .............. 6 Crevalle Jack ................................................. 49 IDENTIFICATION IMAGES ...................... 10 Permit .......................................................... 50 Sharks and Rays ........................................ 10 Almaco Jack ................................................. 51 Illustrations of SharkCam -
The West African Enigma: Systematics, Evolution, and Palaeobiogeography of Cardiid Bivalve Procardium
The West African enigma: Systematics, evolution, and palaeobiogeography of cardiid bivalve Procardium JAN JOHAN TER POORTEN and RAFAEL LA PERNA Poorten, J.J. ter and La Perna, R. 2017. The West African enigma: Systematics, evolution, and palaeobiogeography of cardiid bivalve Procardium. Acta Palaeontologica Polonica 62 (4): 729–757. Procardium gen. nov. is proposed for a group of early Miocene to Recent large cardiids in the subfamily Cardiinae. The type species is Cardium indicum, the only living representative, previously assigned to the genus Cardium. It is a mainly West African species, with a very limited occurrence in the westernmost Mediterranean. Procardium gen. nov. and Cardium differ markedly with regard to shell characters and have distinct evolutionary and biogeographic histories. Six species, in the early Miocene to Pleistocene range, and one Recent species are assigned to the new genus: Procardium magnei sp. nov., P. jansseni sp. nov., P. danubianum, P. kunstleri, P. avisanense, P. diluvianum, and P. indicum. During the Miocene, Procardium gen. nov. had a wide distribution in Europe, including the Proto-Mediterranean Sea, Western and Central Paratethys and NE Atlantic, with a maximum diversity during the Langhian and Serravallian. Its palaeobio- geographic history was strongly controlled by climate. During the Langhian stage, warm conditions allowed the genus to reach its highest latitude, ca. 54° N, in the southern North Sea Basin. With cooling, its latitudinal range gradually retreated southward, becoming mainly Mediterranean in the Pliocene–Pleistocene, and West African at present. Key words: Bivalvia, Cardiidae, systematics, Neogene, Quaternary, Africa, Europe. Jan Johan ter Poorten [[email protected]], Integrative Research Center, Field Museum of Natural History, Chica- go, IL 60605, USA. -
Coral Injuries Caused by Spirobranchus Opercula with and Without Epibiotic Turf Algae at Curaçao
Marine Biology (2019) 166:60 https://doi.org/10.1007/s00227-019-3504-6 SHORT NOTE Coral injuries caused by Spirobranchus opercula with and without epibiotic turf algae at Curaçao Bert W. Hoeksema1,2 · Dagmar Wels1 · Roeland J. van der Schoot1 · Harry A. ten Hove1 Received: 11 January 2019 / Accepted: 26 March 2019 © The Author(s) 2019 Abstract Reef-dwelling Christmas tree worms (Spirobranchus spp.) are common coral associates. Their calcareous tubes are usually embedded in the coral skeleton and can be closed by an operculum. Tubes not overgrown by coral tissue either remain bare or become covered by algae. Despite their widespread distribution, high abundance and striking appearance, little is known about the impact of these worms on their hosts. We quantifed visible coral damage caused by Spirobranchus in Curaçao (Southern Caribbean) and found that 62.6% of worm opercula (n = 1323) caused abrasions and tissue loss in their hosts. Filamentous turf algae, known to be potentially harmful to corals, covered 76.9% of the opercula. Examination of the six most frequently inhabited host species showed a variation in the damage percentages, although this was independent of the presence of epibiotic algae on 78.4% of all opercula. Since injured corals are more susceptible to diseases, the overall nega- tive impact of Spirobranchus worms on their hosts may be more severe than previously assumed. Introduction and Nishihira 1996), even if the host becomes overgrown by sponges and octocorals, which in turn can act as replacement Coral-dwelling tubeworms of the genus Spirobranchus hosts (Hoeksema et al. 2015, 2016; García-Hernández and (Polychaeta: Serpulidae), known popularly as Christmas Hoeksema 2017). -
Volume 2. Animals
AC20 Doc. 8.5 Annex (English only/Seulement en anglais/Únicamente en inglés) REVIEW OF SIGNIFICANT TRADE ANALYSIS OF TRADE TRENDS WITH NOTES ON THE CONSERVATION STATUS OF SELECTED SPECIES Volume 2. Animals Prepared for the CITES Animals Committee, CITES Secretariat by the United Nations Environment Programme World Conservation Monitoring Centre JANUARY 2004 AC20 Doc. 8.5 – p. 3 Prepared and produced by: UNEP World Conservation Monitoring Centre, Cambridge, UK UNEP WORLD CONSERVATION MONITORING CENTRE (UNEP-WCMC) www.unep-wcmc.org The UNEP World Conservation Monitoring Centre is the biodiversity assessment and policy implementation arm of the United Nations Environment Programme, the world’s foremost intergovernmental environmental organisation. UNEP-WCMC aims to help decision-makers recognise the value of biodiversity to people everywhere, and to apply this knowledge to all that they do. The Centre’s challenge is to transform complex data into policy-relevant information, to build tools and systems for analysis and integration, and to support the needs of nations and the international community as they engage in joint programmes of action. UNEP-WCMC provides objective, scientifically rigorous products and services that include ecosystem assessments, support for implementation of environmental agreements, regional and global biodiversity information, research on threats and impacts, and development of future scenarios for the living world. Prepared for: The CITES Secretariat, Geneva A contribution to UNEP - The United Nations Environment Programme Printed by: UNEP World Conservation Monitoring Centre 219 Huntingdon Road, Cambridge CB3 0DL, UK © Copyright: UNEP World Conservation Monitoring Centre/CITES Secretariat The contents of this report do not necessarily reflect the views or policies of UNEP or contributory organisations. -
Defensive Synergy: the Antipredatory Role of Glass Spicules in Caribbean Demosponges
DEFENSIVE SYNERGY: THE ANTIPREDATORY ROLE OF GLASS SPICULES IN CARIBBEAN DEMOSPONGES Adam C. Jones A Thesis Submitted to the University of North Carolina at Wilmington in Partial Fulfillment Of the Requirements for the Degree of Master of Science Department of Biological Sciences University of North Carolina at Wilmington 2004 Approved by Advisory Committee ___________________ ___________________ ___________________ Chair Accepted by __________________ Dean, Graduate School This thesis has been prepared in the style and format consistent with the journal Oecologia ii TABLE OF CONTENTS Page ABSTRACT …………………………………………………………………………. iv ACKNOWLEDGEMENTS . ………………………………………………………… v LIST OF TABLES ..…………………………………………………………………. vi LIST OF FIGURES ..………………………………………………………………... vii INTRODUCTION …………………………………………………………………… 1 MATERIALS AND METHODS …………………………………………………… 9 Sponge collection and identification………………….……………………… 9 Crude extract isolation……………………………………………………….. 9 Spicule isolation……………………………………………………………... 10 Feeding assays………...……………………………………………………... 11 Statistical procedures…………………………………………………………. 13 RESULTS ……………………………………………………………………….…… 16 DISCUSSION …………………………………………………………….………… 29 Benefits of statistical procedures ……………………………………………. 35 LITERATURE CITED ……………………………………………………………... 36 iii ABSTRACT Many sponge species produce secondary metabolites that deter predation. Sponges also contain siliceous spicules, but previous studies have provided little evidence that spicules offer any defense against generalist fish predators. However, feeding -
Molinière-Beauséjour Marine Protected Area Management Plan Table of Ccontentsontents
MolinièreMolinière----BeauséjourBeauséjour Marine Protected Area Grenada Management Plan Grenada Ministry of Agriculture, Forestry & FisheriesFisheries September 2010 Acknowledgments All persons who have contributed to the development of this plan, namely the MPA Stakeholders Committee, the personnel of the Fisheries division, and all the people who kindly shared relevant pieces of information that were put together to build this document are hereby acknowledged. Special thanks are due to local communities and fishermen who willingly gave their time to participate in the surveys. This management plan was developed with technical assistance provided by the United States Agency for International Development through the Caribbean Open Trade Support project (COTS). The consultant Dr Dominique Roby, main author of this document, was assisted in the field by Tyrone Buckmire. Jerry Mitchell produced the maps on Figures 1, 4 and 8. The National Fish and Wildlife Foundation provided a financial support to the MPA Realization in Grenada Project which outputs were integrated in the development of the management plan. ii Molinière-Beauséjour Marine Protected Area Management Plan Table of ccontentsontents AcknowledgmentsAcknowledgments................................................................................................................................................................................................................... ................................................................................................ ...............................................................................................