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(A) Journals with the Largest Number of Papers Reporting Estimates Of
Supplementary Materials Figure S1. (a) Journals with the largest number of papers reporting estimates of genetic diversity derived from cpDNA markers; (b) Variation in the diversity (Shannon-Wiener index) of the journals publishing studies on cpDNA markers over time. Figure S2. (a) The number of publications containing estimates of genetic diversity obtained using cpDNA markers, in relation to the nationality of the corresponding author; (b) The number of publications on genetic diversity based on cpDNA markers, according to the geographic region focused on by the study. Figure S3. Classification of the angiosperm species investigated in the papers that analyzed genetic diversity using cpDNA markers: (a) Life mode; (b) Habitat specialization; (c) Geographic distribution; (d) Reproductive cycle; (e) Type of flower, and (f) Type of pollinator. Table S1. Plant species identified in the publications containing estimates of genetic diversity obtained from the use of cpDNA sequences as molecular markers. Group Family Species Algae Gigartinaceae Mazzaella laminarioides Angiospermae Typhaceae Typha laxmannii Angiospermae Typhaceae Typha orientalis Angiospermae Typhaceae Typha angustifolia Angiospermae Typhaceae Typha latifolia Angiospermae Araliaceae Eleutherococcus sessiliflowerus Angiospermae Polygonaceae Atraphaxis bracteata Angiospermae Plumbaginaceae Armeria pungens Angiospermae Aristolochiaceae Aristolochia kaempferi Angiospermae Polygonaceae Atraphaxis compacta Angiospermae Apocynaceae Lagochilus macrodontus Angiospermae Polygonaceae Atraphaxis -
Appendix C Plant and Animal Species Observed
Appendix C Plant and Animal Species Observed This list includes vascular plants, mammals, birds, reptiles, and amphibians observed in the BSA by biologists during various surveys in 2005 and 2006. This list does not include invertebrate species. Invertebrates that would be most commonly encountered on the site would include butterflies, flies, dragonflies, damselflies, beetles, earwigs, grasshoppers, crickets, termites, true bugs, mantids, lacewings, bees, wasps, ants, and spiders. PLANT SPECIES OBSERVED Scientific Name Common Name Invasive Plant Rating CLUB AND SPIKE MOSSES Selaginellaceae Spike moss family Selaginella cinerascens Mesa spikemoss TRUE FERNS Azollaceae Mosquito fern family Azolla filiculoides Pacific mosquito fern Marsileaceae Marsilea family Marsilea vestita Hairy waterclover Pilularia americana American pillwort Pteridaceae Lip fern family Pellaea andromedifolia Coffee fern Pentagramma triangularis Goldenback fern PINOPHYTA GYMNOSPERMS Cupressaceace Cypress family Juniperus californica California juniper DICOT FLOWERING PLANTS Aizoaceae Carpet weed family Carpobrotus edulis* Hottentot-fig HIGH Mesembryanthemum nodiflorum* Slender-leaved ice plant Trianthema portulacastrum Horse-purslane Amaranthaceae Amaranth family Amaranthus albus* Tumbling pigweed Amaranthus palmeri Palmer’s pigweed Amaranthus sp. Pigweed Anacardiaceae Sumac family Malosma laurina Laurel sumac Rhus ovata Sugar bush Rhus trilobata Skunkbush sumac Schinus molle* Peruvian pepper tree LIMITED Schinus terebinthifolius* Brazilian pepper tree LIMITED Mid -
Appendix D Species Accounts Appendix D Species Accounts
Appendix D Species Accounts Appendix D Species Accounts Table of Contents San Joaquin Spearscale (Atriplex joaquiniana) ...................................................... 1 Recurved Larkspur (Delphinium recurvatum) ........................................................ 4 Big Tarplant (Blepharizonia plumosa) .................................................................... 6 Congdon’s Tarplant (Centromadia parryi ssp. congdonii) ..................................... 8 Palmate-bracted bird’s-beak (Cordylanthus palmatus) ....................................... 10 Livermore tarplant (Deinandra bacigalupii) ........................................................ 11 Longhorn Fairy Shrimp ......................................................................................... 12 Vernal Pool Fairy Shrimp ..................................................................................... 15 Callippe Silverspot Butterfly ................................................................................ 18 California Tiger Salamander ................................................................................. 21 California Red-Legged Frog .................................................................................. 25 Foothill yellow-legged frog .................................................................................. 28 Alameda Whipsnake ............................................................................................ 31 Central California Coast Steelhead ..................................................................... -
Phylogenies and Secondary Chemistry in Arnica (Asteraceae)
Digital Comprehensive Summaries of Uppsala Dissertations from the Faculty of Science and Technology 392 Phylogenies and Secondary Chemistry in Arnica (Asteraceae) CATARINA EKENÄS ACTA UNIVERSITATIS UPSALIENSIS ISSN 1651-6214 UPPSALA ISBN 978-91-554-7092-0 2008 urn:nbn:se:uu:diva-8459 !"# $ % !& '((" !()(( * * * + , - . , / , '((", + 0 1# 2, # , 34', 56 , , 70 46"84!855&86(4'8(, - 1# 2 . * 9 10-2 . * . # 9 , * * 1 ! " #! !$ 2 1 2 .8 # * * :# 77 1%&'(2 . !6 '3, + . .8 ) / , ; < * . * ** # , * * * , 09 * . # * * 33 * != , 0- # 9 * * 1, , * 2 . * , 0 * * * * * . * , $ * 0- * % # , # 8 * * * * * * $8> # . * * !' , * * . ** , ? . 0- , +,- # # 7-0 -0 :+' 9 +# $8> ./0) . ) 1 ) 2 * 3) ) .456(7 ) , @ / '((" 700 !=5!8='!& 70 46"84!855&86(4'8( ) ))) 8"&54 1 );; ,/,; A B ) ))) 8"&542 List of Papers This thesis is based on the following papers, which are referred to in the text by their Roman numerals: I Ekenäs, C., B. G. Baldwin, and K. Andreasen. 2007. A molecular phylogenetic -
Shared Flora of the Alta and Baja California Pacific Islands
Monographs of the Western North American Naturalist Volume 7 8th California Islands Symposium Article 12 9-25-2014 Island specialists: shared flora of the Alta and Baja California Pacific slI ands Sarah E. Ratay University of California, Los Angeles, [email protected] Sula E. Vanderplank Botanical Research Institute of Texas, 1700 University Dr., Fort Worth, TX, [email protected] Benjamin T. Wilder University of California, Riverside, CA, [email protected] Follow this and additional works at: https://scholarsarchive.byu.edu/mwnan Recommended Citation Ratay, Sarah E.; Vanderplank, Sula E.; and Wilder, Benjamin T. (2014) "Island specialists: shared flora of the Alta and Baja California Pacific slI ands," Monographs of the Western North American Naturalist: Vol. 7 , Article 12. Available at: https://scholarsarchive.byu.edu/mwnan/vol7/iss1/12 This Monograph is brought to you for free and open access by the Western North American Naturalist Publications at BYU ScholarsArchive. It has been accepted for inclusion in Monographs of the Western North American Naturalist by an authorized editor of BYU ScholarsArchive. For more information, please contact [email protected], [email protected]. Monographs of the Western North American Naturalist 7, © 2014, pp. 161–220 ISLAND SPECIALISTS: SHARED FLORA OF THE ALTA AND BAJA CALIFORNIA PACIFIC ISLANDS Sarah E. Ratay1, Sula E. Vanderplank2, and Benjamin T. Wilder3 ABSTRACT.—The floristic connection between the mediterranean region of Baja California and the Pacific islands of Alta and Baja California provides insight into the history and origin of the California Floristic Province. We present updated species lists for all California Floristic Province islands and demonstrate the disjunct distributions of 26 taxa between the Baja California and the California Channel Islands. -
The Flowering Plants and Ferns of Anacapa Island, California
Western North American Naturalist Volume 78 Number 4 Papers from the 9th California Article 17 Islands Symposium (Part 2) 2-15-2018 The flowering plants and ernsf of Anacapa Island, California Steve Junak Santa Barbara Botanic Garden, Santa Barbara, CA, [email protected] Ralph Philbrick Follow this and additional works at: https://scholarsarchive.byu.edu/wnan Recommended Citation Junak, Steve and Philbrick, Ralph (2018) "The flowering plants and ernsf of Anacapa Island, California," Western North American Naturalist: Vol. 78 : No. 4 , Article 17. Available at: https://scholarsarchive.byu.edu/wnan/vol78/iss4/17 This Article is brought to you for free and open access by the Western North American Naturalist Publications at BYU ScholarsArchive. It has been accepted for inclusion in Western North American Naturalist by an authorized editor of BYU ScholarsArchive. For more information, please contact [email protected], [email protected]. Western North American Naturalist 78(4), © 2018, pp. 652 –673 The flowering plants and ferns of Anacapa Island, California STEVE JUNAK 1,* AND RALPH PHILBRICK 2 1Santa Barbara Botanic Garden, 1212 Mission Canyon Road, Santa Barbara, CA 93105 2Deceased. 29 San Marcos Trout Club, Santa Barbara, CA 93105 ABSTRACT .—The 3 islets of Anacapa Island, with a combined area of 1.1 mi 2 (2.9 km 2), lie 13 mi (20 km) off the coast of southern California. Historically, each of Anacapa’s islets has been subjected to periodic grazing by sheep, and the eastern islet has also had a sizeable population of introduced rabbits. In spite of these past perturbations, the recovery of the island’s vegetation has been remarkable since sheep removal in 1937. -
Glenn Lukos Associates
TECHNICAL MEMORANDUM GLENN LUKOS ASSOCIATES Regulatory Services PROJECT NUMBER: 03650025CLAY TO: Hardy Strozier, The Planning Associates FROM: Jason Fitzgibbon, Biologist DATE: May 25, 2014 SUBJECT: Update to Biological Constraints Analysis for the 1,400-Acre Alberhill Villages Specific Plan Site Located in Lake Elsinore, Riverside County, California. On March 24, and May 12, 2014, updated focused plant surveys and general biological surveys were conducted at the approximately 1,420-acre Alberhill Villages Specific Plan (site), in the City of Lake Elsinore, Riverside County, California. Firstly, the purpose of this update was to verify existing biological resources on-site as identified during surveys conducted by Glenn Lukos Associates (GLA) biologists in 2008. Secondly, updated focused plant surveys, general biological surveys, and habitat assessments for sensitive species were conducted to identify and address the potential for the project to impact any sensitive species that may not have been addressed in the 2008 GLA Biological Constraints report. SUMMARY In general, relatively few changes were noted at the approximately 1,420-acre site. The majority of the site is still being actively mined and as a result is primarily comprised of ruderal, non- native vegetation, or recently disturbed ground. Significant changes in vegetation/land cover types at the site included the recent removal of a large area of non-native eucalyptus (Eucalyptus sp.) woodland along the northern margin of the site adjacent to Temescal Creek Road, the establishment of a few isolated patches of Riversidean sage scrub within the active mine footprint, and the growth of willow riparian forest along the perimeter of multiple water quality basins. -
Invasive Non-Native Plant Early Detection and Rapid Response (EDRR) Targets in Western San Diego County
Invasive non-native plant Early Detection and Rapid Response (EDRR) targets in western San Diego County Report new sightings of these plants to coordinator Jason Giessow, [email protected] or iNaturalist.org or Calflora.org Version 2019-6-3 Populations ID Scientific name Common name Growth form CDFA Habitat Status (eradicated) Sheet Aegilops triuncialis Barbed goat grass Annual grass B Grassland Active EDRR target 1 (1) Yes Ageratina adenophora Eupatory Perennial forb Q Riparian Active EDRR target 4 Yes Carrichtera annua Ward's weed Annual forb A Uplands (shrub & grass) Active EDRR target 5 Yes Centaurea solstitialis Yellow star thistle Annual forb C Grassland Active EDRR target 11 (11) Yes Centaurea stoebe Spotted knapweed Annual forb A Uplands Active EDRR target 3 (3) Yes Cytisus scoparius Scotch broom Perennial shrub C Uplands (shrub & grass) Eradicated: monitoring (1) Elymus caput-medusae Medusahead Annual grass C Grassland Active EDRR target 7 Yes Perennial sub- Enchylaena tomentosa Ruby saltbush A Uplands (shrub & grass) Assessing 1 (1) Yes shrub Euphorbia terracina Carnation spurge Annual forb B Uplands Eradicated: monitoring 8 (1) Yes Yes Euphorbia virgata Leafy spurge Annual forb A Uplands Active EDRR target 1 (1) (See ET) Genista monosperma Bridal broom Perennial shrub B Uplands (shrub & grass) Active EDRR target 4 Yes Genista monspessulana French broom Perennial shrub C Riparian or uplands Active EDRR target 5 Yes Canary Island St. Hypericum canariense Perennial shrub B Shrublands Active EDRR target 12 Yes John's wort Perennial -
Checklist of the Vascular Plants of San Diego County 5Th Edition
cHeckliSt of tHe vaScUlaR PlaNtS of SaN DieGo coUNty 5th edition Pinus torreyana subsp. torreyana Downingia concolor var. brevior Thermopsis californica var. semota Pogogyne abramsii Hulsea californica Cylindropuntia fosbergii Dudleya brevifolia Chorizanthe orcuttiana Astragalus deanei by Jon P. Rebman and Michael G. Simpson San Diego Natural History Museum and San Diego State University examples of checklist taxa: SPecieS SPecieS iNfRaSPecieS iNfRaSPecieS NaMe aUtHoR RaNk & NaMe aUtHoR Eriodictyon trichocalyx A. Heller var. lanatum (Brand) Jepson {SD 135251} [E. t. subsp. l. (Brand) Munz] Hairy yerba Santa SyNoNyM SyMBol foR NoN-NATIVE, NATURaliZeD PlaNt *Erodium cicutarium (L.) Aiton {SD 122398} red-Stem Filaree/StorkSbill HeRBaRiUM SPeciMeN coMMoN DocUMeNTATION NaMe SyMBol foR PlaNt Not liSteD iN THE JEPSON MANUAL †Rhus aromatica Aiton var. simplicifolia (Greene) Conquist {SD 118139} Single-leaF SkunkbruSH SyMBol foR StRict eNDeMic TO SaN DieGo coUNty §§Dudleya brevifolia (Moran) Moran {SD 130030} SHort-leaF dudleya [D. blochmaniae (Eastw.) Moran subsp. brevifolia Moran] 1B.1 S1.1 G2t1 ce SyMBol foR NeaR eNDeMic TO SaN DieGo coUNty §Nolina interrata Gentry {SD 79876} deHeSa nolina 1B.1 S2 G2 ce eNviRoNMeNTAL liStiNG SyMBol foR MiSiDeNtifieD PlaNt, Not occURRiNG iN coUNty (Note: this symbol used in appendix 1 only.) ?Cirsium brevistylum Cronq. indian tHiStle i checklist of the vascular plants of san Diego county 5th edition by Jon p. rebman and Michael g. simpson san Diego natural history Museum and san Diego state university publication of: san Diego natural history Museum san Diego, california ii Copyright © 2014 by Jon P. Rebman and Michael G. Simpson Fifth edition 2014. isBn 0-918969-08-5 Copyright © 2006 by Jon P. -
(12) Patent Application Publication (10) Pub. No.: US 2017/0051296A1 BEETHAM Et Al
US 20170051296A1 (19) United States (12) Patent Application Publication (10) Pub. No.: US 2017/0051296A1 BEETHAM et al. (43) Pub. Date: Feb. 23, 2017 (54) METHODS AND COMPOSITIONS FOR (60) Provisional application No. 61/953,333, filed on Mar. INCREASING EFFICIENCY OF TARGETED 14, 2014, provisional application No. 62/051,579, GENE MODIFICATION USING filed on Sep. 17, 2014, provisional application No. OLGONUCLEOTDE-MEDIATED GENE 62/075,811, filed on Nov. 5, 2014, provisional appli REPAIR cation No. 62/075,816, filed on Nov. 5, 2014, provi sional application No. 62/133,129, filed on Mar. 13, (71) Applicants: CIBUS US LLC, San Diego, CA (US); 2015, provisional application No. 61/801,333, filed CIBUS EUROPE B.V., AD Kapelle on Mar. 15, 2013. (NL) (72) Inventors: Peter R. BEETHAM, Carlsbad, CA Publication Classification (US); Gregory F.W. GOCAL, San (51) Int. C. Diego, CA (US); Christian CI2N 5/82 SCHOPKE, Carlsbad, CA (US); Noel (2006.01) SAUER, Oceanside, CA (US); James (52) U.S. C. PEARCE, La Jolla, CA (US); Rosa E. CPC ....... CI2N 15/8213 (2013.01); C12N 2800/80 SEGAMI, Escondio, CA (US); Jerry (2013.01) MOZORUK, Encinitas, CA (US) (57) ABSTRACT (21) Appl. No.: 15/069.885 Provided herein include methods and compositions for (22) Filed: Mar. 14, 2016 effecting a targeted genetic change in DNA in a cell. Certain aspects and embodiments relate to improving the efficiency Related U.S. Application Data of the targeting of modifications to specific locations in (63) Continuation-in-part of application No. PCT/ genomic or other nucleotide sequences. As described herein, US2015/020622, filed on Mar. -
Delta Products Property
BIOLOGICAL RESOURCES ANALYSIS REPORT FOR THE DELTA PRODUCTS PROPERTY FREMONT, CALIFORNIA Prepared for: CITY OF FREMONT PLANNING DIVISION 39550 Liberty Street Fremont, California 94538 Prepared by: OLBERDING ENVIRONMENTAL, INC. Wetland Regulatory Consultants 3170 Crow Canyon Place, Suite 260 San Ramon, California 94583 Phone: (925) 866-2111 ~ FAX (925) 866-2126 Contact: Jeff Olberding MAY 2012 Revised JULY 2012 TABLE OF CONTENTS SUMMARY .................................................................................................................................... 1 1.0 INTRODUCTION ................................................................................................................ 3 2.0 LOCATION .......................................................................................................................... 3 3.0 PROPERTY DESCRIPTION ............................................................................................... 3 4.0 REGULATORY SETTING ................................................................................................. 4 4.1 Federal Regulatory Setting ........................................................................................ 4 4.1.1 Plants and Wildlife ...................................................................................... 4 4.1.2 Wetlands/Waters ......................................................................................... 4 4.1.3 Migratory Bird Treaty Act .......................................................................... 6 4.1.4 The -
Fine-Scale to Flora-Wide Phylogenetic Perspectives on Californian Plant Diversity, Endemism, and Conservation
Fine-scale to flora-wide phylogenetic perspectives on Californian plant diversity, endemism, and conservation Bruce G. Baldwin1,2 1 I thank Peter H. Raven, Patricia J. D. Raven, and Peter C. Hoch for being such gracious hosts at the 65th Annual Symposium of the Missouri Botanical Garden on the “Biota of North America: What we know, what we don’t know and what we’re losing.” I also am grateful to Brent D. Mishler, David D. Ackerly, Matthew M. Kling, Andrew H. Thornhill, and other members of the California Plant Phylodiversity Project (CPPP) for their spatial phylogenetic and conservation prioritization efforts and collaboration, to Matthew M. Kling for providing Fig. 1G and 1H, to Toni Corelli, Neal Kramer, Michael Park, and Chris Winchell for permission to reproduce photographs in Fig. 1, to Susan Fawcett for assistance with Fig. 1, and to her and an anonymous reviewer for helpful comments on the manuscript. Research summarized here was supported in part by the National Science Foundation (DEB-1354552, to Brent D. Mishler, David D. Ackerly, and BGB; DEB-1601504, to Adam C. Schneider and BGB; and DEB-0324733 and DEB-9458237, to BGB), the Lawrence R. Heckard Endowment Fund of the Jepson Herbarium, and the late Roderic B. Park and other Friends of the Jepson Herbarium. 2 Jepson Herbarium and Department of Integrative Biology, 1001 Valley Life Sciences Building #2465, University of California, Berkeley, California 94720-2465, U.S.A. [email protected] Key words: biodiversity hotspots, California Floristic Province, cryptic diversity, deserts, extinction, floristics, Mediterranean climate, neo-endemism, paleo-endemism, phylodiversity, phyloendemism, spatial phylogenetics.