Master's Thesis
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Foraminiferal Assemblages on Sediments and Reef Rubble at Conch Reef, Florida USA by Christy McNey Stephenson A thesis submitted in partial fulfillment of the requirements for the degree of Master of Science College of Marine Science University of South Florida Major Professor: Pamela Hallock Muller, Ph.D. Kendra Daly, Ph.D. Lisa Robbins, Ph.D. Date of Approval: April 11, 2011 Keywords: coral reef, environmental indicators, benthic communities, concentration ratio, FORAM Index Copyright © 2011, Christy McNey Stephenson DEDICATION I dedicate this thesis to my mother and myself. “Mom, while you are no longer with the living you are still a source of encouragement and inspiration to me throughout my life.” This thesis is dedicated to two strong women, whom never let the obstacles of life get in the way of personal success. ACKNOWLEDGEMENTS I would like to thank my advisor Dr. Pamela Hallock Muller for her patience, support, and guidance throughout my graduate career. I also acknowledge my committee members, Kendra Daly Ph.D. and Lisa Robbins Ph.D. for their critical reviews of my thesis. This research would not have been possible without field support from NOAA contract number to NURC-UNCW: NA080AR4300863; subcontract to UNC-Chapel Hill: ARB-2008-11 (PIs: C. Martens and N. Lindquist); subcontract to USF: 5-46147 (PIs: P. Hallock Muller and R. Byrne). Special thanks to J. Scott Fulcher for his invaluable help processing samples, photographic support and providing tremendous mental and moral support. TABLE OF CONTENTS LIST OF TABLES ............................................................................................................ iii LIST OF FIGURES ......................................................................................................... vii ABSTRACT .................................................................................................................... x INTRODUCTION ............................................................................................................. 1 Conch Reef............................................................................................................. 1 Foraminifera ........................................................................................................... 4 Foraminifera as environmental indicators ............................................................. 5 Indices .................................................................................................................... 7 Controversy in foraminiferal research ................................................................. 11 PROJECT OBJECTIVES ................................................................................................ 14 Major questions and hypothesis ........................................................................... 15 METHODS .................................................................................................................. 16 Sample collection ................................................................................................. 16 Sample processing ............................................................................................... 17 Sediment samples..................................................................................... 17 Grain-size analysis ................................................................................... 18 Rubble samples ........................................................................................ 18 Foraminiferal assemblages ....................................................................... 19 Data analysis ........................................................................................................ 20 Grain-size analysis ................................................................................... 20 Foraminiferal assemblages ....................................................................... 20 Indices analysis ........................................................................................ 20 Multivariate analyses of foraminiferal assemblages ................................ 24 RESULTS .................................................................................................................. 26 Grain-size ............................................................................................................. 26 Foraminiferal assemblages in sediment samples ................................................. 28 Key genera ............................................................................................... 28 Indices analysis ........................................................................................ 29 Sample distribution .................................................................................. 34 i Foraminiferal assemblages in rubble samples ..................................................... 41 Key genera ............................................................................................... 41 Indices analysis ........................................................................................ 41 Sample distribution .................................................................................. 45 Comparison of foraminiferal assemblages with sediment and rubble samples ......................................................................................... 53 Key genera ............................................................................................... 53 Indices analysis ........................................................................................ 53 Sample distribution .................................................................................. 55 Concentration ratio................................................................................... 62 Comparison of live versus dead foraminiferal assemblages .................... 64 Langer Morphotypes ................................................................................ 64 DISCUSSION .................................................................................................................. 69 History of previous studies ................................................................................. 69 Sample homogeneity and distribution ................................................................. 70 Concentration ratio............................................................................................... 71 Faunal assemblages .............................................................................................. 74 Total assemblage controversy .............................................................................. 75 Comparison of live versus dead foraminiferal assemblages ................................ 76 Within sample versus within site variability ........................................................ 78 Indices .................................................................................................................. 79 CONCLUSION ................................................................................................................ 82 REFERENCES ................................................................................................................ 85 APPENDICES ................................................................................................................. 96 Appendix A: Raw data from sediment samples .................................................. 97 Appendix B: Raw SIMPER results from sediment samples .............................. 101 Appendix C: Raw data from rubble samples ..................................................... 107 Appendix D: Raw SIMPER results from rubble samples .................................. 111 Appendix E: Foraminiferal Species list for Conch Reef, Florida ...................... 120 Appendix F: Raw SIMPER results on the combined data set by Clusters ........ 126 Appendix G: Raw SIMPER results on the combined data set to sample type .............................................................................................. 134 ii LIST OF TABLES Table 1: Calculation of the FORAM Index............................................................... 23 Table 2: Weight percent for each grain size class for the 17 sediment samples from Conch Reef, collected in October 2008 ............................................. 27 Table 3: Distribution of median grain size in 17 sediment samples from Conch Reef, collected in October 2008 ...................................................... 27 Table 4: All foraminiferal genera identified in samples collected at Conch Reef in October 2008. ................................................................................ 30 Table 5: Summary of foraminiferal assemblage data and indices in sediment samples collected at Conch Reef, October 2008 ........................................ 33 Table 6: Summary of ANOSIM and SIMPER results for sediment samples by clusters ........................................................................................................ 37 Table 7: ANOSIM pairwise test of the sediment samples to FI groupings .............. 38 Table 8: Summary of the foraminiferal assemblage data and indices in rubble samples collected at Conch Reef, October 2008 ....................................... 42 Table 9: Summary of ANOSIM and SIMPER results for rubble samples by Clusters ....................................................................................................... 50 Table