Histidinaemia in Mouse and Man
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Joosten, Han M.L.J.; Herst, Patricia M.; Drift, Chris Van Der
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by University of Groningen University of Groningen Characterization of Glutamine-Requiring Mutants of Pseudomonas aeruginosa Janssen, Dick B.; Joosten, Han M.L.J.; Herst, Patricia M.; Drift, Chris van der Published in: Archives of Microbiology IMPORTANT NOTE: You are advised to consult the publisher's version (publisher's PDF) if you wish to cite from it. Please check the document version below. Document Version Publisher's PDF, also known as Version of record Publication date: 1982 Link to publication in University of Groningen/UMCG research database Citation for published version (APA): Janssen, D. B., Joosten, H. M. L. J., Herst, P. M., & Drift, C. V. D. (1982). Characterization of Glutamine- Requiring Mutants of Pseudomonas aeruginosa. Archives of Microbiology, 131(4). Copyright Other than for strictly personal use, it is not permitted to download or to forward/distribute the text or part of it without the consent of the author(s) and/or copyright holder(s), unless the work is under an open content license (like Creative Commons). Take-down policy If you believe that this document breaches copyright please contact us providing details, and we will remove access to the work immediately and investigate your claim. Downloaded from the University of Groningen/UMCG research database (Pure): http://www.rug.nl/research/portal. For technical reasons the number of authors shown on this cover page is limited to 10 maximum. Download date: 12-11-2019 JOURNAL OF BACTERIOLOGY, Sept. 1982, p. 1176-1183 Vol. 151, No. -
Reinhart Heinrich (1946–2006) Pioneer in Systems Biology
NEWS & VIEWS NATURE|Vol 444|7 December 2006 OBITUARY Reinhart Heinrich (1946–2006) Pioneer in systems biology. In biology, mathematical systems analysis where he showed that the flux of was until recently nearly invisible in the reaction was shared by several the dazzling light of twentieth-century enzymes. Much later, he extended discoveries. But it has emerged from the his ideas to signal-transduction shadows in the field of systems biology, pathways, introducing control a subject buoyed by immense data sets, coefficients to dynamic processes. conveyed by heavy computing power, and Sticking to real examples, such as addressing seemingly incomprehensible the Wnt signalling and MAP kinase forms of complexity. If systems biology has pathways, he again demonstrated heroes, one of them is Reinhart Heinrich, a that new properties and constraints former professor at the Humboldt University emerge when the individual steps in Berlin, who died on 23 October, aged are combined into a complete 60. His most famous accomplishment was pathway. metabolic control theory, published in Heinrich also pointed the way to 1974 with Tom Rapoport and formulated considerations of optimality theory independently by Henrik Kacser and James and evolution that will confront A. Burns in Edinburgh, UK. systems biology for the next From the 1930s to the 1960s, biochemists century. The question of evolution were busy describing metabolic pathways, lies just beneath any effort to just as molecular biologists today are understand biology. Yet in most feverishly trying to inventory the cell’s cases, physiological function and gene-transcription and signalling circuits. evolutionary change are considered The basic kinetic features of the enzymes in distinct and are investigated by the major pathways were studied in great different people. -
Amino Acid Disorders 105
AMINO ACID DISORDERS 105 Massaro, A. S. (1995). Trypanosomiasis. In Guide to Clinical tions in biological fluids relatively easy. These Neurology (J. P. Mohrand and J. C. Gautier, Eds.), pp. 663– analyzers separate amino acids either by ion-ex- 667. Churchill Livingstone, New York. Nussenzweig, V., Sonntag, R., Biancalana, A., et al. (1953). Ac¸a˜o change chromatography or by high-pressure liquid de corantes tri-fenil-metaˆnicos sobre o Trypanosoma cruzi in chromatography. The results are plotted as a graph vitro: Emprego da violeta de genciana na profilaxia da (Fig. 1). The concentration of each amino acid can transmissa˜o da mole´stia de chagas por transfusa˜o de sangue. then be calculated from the size of the corresponding O Hospital (Rio de Janeiro) 44, 731–744. peak on the graph. Pagano, M. A., Segura, M. J., DiLorenzo, G. A., et al. (1999). Cerebral tumor-like American trypanosomiasis in Most amino acid disorders can be diagnosed by acquired immunodeficiency syndrome. Ann. Neurol. 45, measuring the concentrations of amino acids in 403–406. blood plasma; however, some disorders of amino Rassi, A., Trancesi, J., and Tranchesi, B. (1982). Doenc¸ade acid transport are more easily recognized through the Chagas. In Doenc¸as Infecciosas e Parasita´rias (R. Veroesi, Ed.), analysis of urine amino acids. Therefore, screening 7th ed., pp. 674–712. Guanabara Koogan, Sa˜o Paulo, Brazil. Spina-Franc¸a, A., and Mattosinho-Franc¸a, L. C. (1988). for amino acid disorders is best done using both South American trypanosomiasis (Chagas’ disease). In blood and urine specimens. Occasionally, analysis of Handbook of Clinical Neurology (P. -
Fitness As a Function of Β-Galactosidase Activity In
Genet. Res., Camb. (1986), 48, pp. 1-8 With 3 text-figures Printed in Great Britain Fitness as a function of /?-galactosidase activity in Escherichia coli ANTONY M. DEAN, DANIEL E. DYKHUIZEN AND DANIEL L. HARTL Department of Genetics, Washington University School of Medicine, St Louis, Missouri USA 63110-1095 (Received 12 July 1985 and in revised form 13 January 1986) Summary Chemostat cultures in which the limiting nutrient was lactose have been used to study the relative growth rate of Escherichia coli in relation to the enzyme activity of /?-galactosidase. A novel genetic procedure was employed in order to obtain amino acid substitutions within the /acZ-encoded /?-galactosidase that result in differences in enzyme activity too small to be detected by ordinary mutant screens. The cryptic substitutions were obtained as spontaneous revertants of nonsense mutations within the lacZ gene, and the enzymes differing from wild type were identified by means of polyacrylamide gel electrophoresis or thermal denaturation studies. The relation between enzyme activity and growth rate of these and other mutants supports a model of intermediary metabolism in which the flux of substrate through a metabolic pathway is represented by a concave function of the activity of any enzyme in the pathway. The consequence is that small differences in enzyme activity from wild type result in even smaller changes in fitness. 1. Introduction sidase activity and growth rate in E. coli, together with a novel genetic technique for obtaining amino acid In the seminal paper, Kacser & Burns (1973) demon- strated that the net flux through a simple linear meta- substitutions that result in electrophoretic or thermo- bolic pathway should be a concave function of the lability differences from wild type. -
Uva-DARE (Digital Academic Repository)
UvA-DARE (Digital Academic Repository) Henrik Kacser 1918-1995: Metabolism of control. Westerhoff, H.V. DOI 10.1016/S0167-7799(00)88956-8 Publication date 1995 Published in Trends in Biotechnology Link to publication Citation for published version (APA): Westerhoff, H. V. (1995). Henrik Kacser 1918-1995: Metabolism of control. Trends in Biotechnology, 13, 245. https://doi.org/10.1016/S0167-7799(00)88956-8 General rights It is not permitted to download or to forward/distribute the text or part of it without the consent of the author(s) and/or copyright holder(s), other than for strictly personal, individual use, unless the work is under an open content license (like Creative Commons). Disclaimer/Complaints regulations If you believe that digital publication of certain material infringes any of your rights or (privacy) interests, please let the Library know, stating your reasons. In case of a legitimate complaint, the Library will make the material inaccessible and/or remove it from the website. Please Ask the Library: https://uba.uva.nl/en/contact, or a letter to: Library of the University of Amsterdam, Secretariat, Singel 425, 1012 WP Amsterdam, The Netherlands. You will be contacted as soon as possible. UvA-DARE is a service provided by the library of the University of Amsterdam (https://dare.uva.nl) Download date:25 Sep 2021 245 f orum Henrik Kacser (19184995): metabolism of control Obituary Henrik Kacser has been referred missed the rate-limiting step. He funding agency had allowed much to as the ‘pope’ of Metabolic much appreciated -
Amino Acid Catabolism in Staphylococcus Aureus
University of Nebraska Medical Center DigitalCommons@UNMC Theses & Dissertations Graduate Studies Fall 12-16-2016 Amino Acid Catabolism in Staphylococcus aureus Cortney Halsey University of Nebraska Medical Center Follow this and additional works at: https://digitalcommons.unmc.edu/etd Part of the Bacteriology Commons Recommended Citation Halsey, Cortney, "Amino Acid Catabolism in Staphylococcus aureus" (2016). Theses & Dissertations. 160. https://digitalcommons.unmc.edu/etd/160 This Dissertation is brought to you for free and open access by the Graduate Studies at DigitalCommons@UNMC. It has been accepted for inclusion in Theses & Dissertations by an authorized administrator of DigitalCommons@UNMC. For more information, please contact [email protected]. Amino Acid Catabolism in Staphylococcus aureus By Cortney R. Halsey A DISSERTATION Presented to the Faculty of The Graduate College in the University of Nebraska In Partial Fulfillment of the Requirements For the Degree of Doctor of Philosophy Pathology and Microbiology Under the Supervision of Dr. Paul D. Fey University of Nebraska Medical Center Omaha, Nebraska October 2016 Supervisory Committee: Kenneth Bayles, Ph.D. Steven Carson, Ph.D. Paul Dunman, Ph.D. Rakesh Singh, Ph.D. ii Acknowledgements First and foremost, I would like to thank my mentor, Dr. Paul Fey, whose patience and support over the past six years has been critical to my success as a graduate student. Paul has given me opportunities to grow as a scientist and person, for which I will be forever thankful. I would also like to thank Dr. Ken Bayles, Dr. Steven Carson, Dr. Paul Dunman, and Dr. Rakesh Singh for serving on my supervisory committee. -
Principles of Systems Biology and Dmitri Belyaev's Co-Selection of Traits
Principles of systems biology and Dmitri Belyaev’s co-selection of traits Hans V. Westerhoff and friends MCISB, MIB, SCEAS, University of Manchester SysBA, Universities of Amsterdam Systems Biology • What is it? • Principles – Lack of dominance (Kacser) – Co-selection (Belyaev) • Progress – Make Me My Model – The genome wide metabolic maps – Epigenetics and noise/cell diversity Bioinformatics: From biological data to information Systems Biology: From that information to understanding Systems Biology: From data to understanding: why is this such an issue? • Because the mapping from genome to function is extremely nonlinear • E.g.: – - – - The DNA in all our cells is the same, but: a heart cell is essentially different from a brain cell – - Self organization, bistability: Belousov, Zhabotinsky, Waddington, Ilya Prigogine, Boris Kholodenko Why systems biology? Cause 1 ~all functions are X network functions Multiple causality Cause 2 Cause 3 X Multifactorial X disease Impaired function 2006 Hornberg et al: ‘Cancer: a systems biology disease’. Now: ‘virtually all disease are Systems Biology diseases.’ This causes the ‘missing heritability problem (Baranov; Stepanov)’ Systems Biology= • The Science that • aims to understand • principles governing • how the biological functions • arise from the interactions = from the networking This leads to precision, personalized, 4P medicine, PPP4M And to precision biotechnology Systems Biology • What is it? • Principles – Lack of dominance (Kacser) – Co-selection (Belyaev) • Progress – Make Me My Model – The genome wide metabolic maps – Epigenetics and noise/cell diversity Henrik Kacser (Student of Waddell) Henrik Kacser Recessivity of most lack-of-function mutations Lack of dominance: No loss of function in heterozygote Lack of dominance: observation F0 F0’ F1 (knock out) X Function= 100% 0% 95% Flux J Lack of dominance: single molecule explanation fails F0 F0’ F1 AA 00 A0 X This is almost always incorre Function= 100% 100% 50% Flux J ct Cf. -
BIOCHEMISTRY of TRYPTOPHAN in HEALTH and DISEASE Contents
Molec. Aspects Med. Vol. 6, pp. 101-197, 1982 0098-2997/82/020101-97548.50/0 Printed in Great Britain. All rights reserved. Copyright © Pergamon Press Ltd. BIOCHEMISTRY OF TRYPTOPHAN IN HEALTH AND DISEASE David A. Bender Courtauld Institute of Biochemistry, The Middlesex Hospital Medical School, London WIP 7PN, U.K. Contents Chapter 1 THE DISCOVERY OF TRYPTOPHAN, ITS PHYSIOLOGICAL SIGNIFICANCE AND METABOLIC FATES 103 Tryptophan and glucose metabolism 105 Xanthurenic acid and insulin 105 The glucose tolerance factor 106 Inhibition of gluconeogenesis by tryptophan metabolites i07 Metabolic fates of tryptophan 108 Protein synthesis 108 Oxidative metabolism Ii0 5-Hydroxyindole synthesis 111 Intestinal bacterial metabolism iii Chapter 2 THE 5-HYDROXYINDOLE PATHWAY OF TRYPTOPHAN METABOLISM; SEROTONIN AND OTHER CENTRALLY ACTIVE TRYPTOPHAN METABOLITES 112 Tryptophan 5-hydroxylase 112 Inhibition of tryptophan hydroxylase and the carcinoid syndrome 116 Aromatic amino acid decarboxylase 118 The specificity of aromatic amino acid decarboxylase 120 Tryptophan metabolism in the pineal gland 121 Monoamine oxidase 124 The uptake of tryptophan into the brain 124 The binding of tryptophan to serum albumin 127 Competition for uptake by other neutral amino acids 129 Changes in tryptophan metabolism in response to food intake 129 Tryptophan uptake into the brain in liver failure 131 Sleep and tryptophan metabolism 134 101 102 D.A. Bender Tryptophan and serotonin in psychiatric disorders 135 Affective disorders 136 Evidence for a deficit of serotonin or tryptophan -
The Molecular Basis of Dominance
THE MOLECULAR BASIS OF DOMINANCE HENRIK KACSER AND JAMES A. BURNS Deprrrtment of Genetics, Uniuersity of Edinburgh, Edinburgh Manuscript received September 3, 1980 ABSTRACT The best known genes of microbes, mice and men are those that specify enzymes. Wild type, mutant and heterozygote for variants of such genes differ in the catalytic activity at the step in the enzyme network specified by the gene in question. The effect on the respective phenotypes of such changes in catalytic activity, however, is not defined by the enzyme change as estimated by in vitro determination of the activities obtained from the extracts of the three types. In vivo enzymes do not act in isolation, but are kinetically linked to other enzymes uiu their substrates and products. These interactions modify the effect of enzyme variation on the phenotype, depending on the nature and quantity of the other enzymes present. An output of such a system, say a flux, is therefore a systemic property, and its response to variation at one locus must be measured in the whole system. This response is best described by the sensi- tivity coefficient, Z, which is defined by the fractional change in flux over the fractional change in enzyme activity. Its magnitude determines the extent to which a particular enzyme “controls” a particular flux or phenotype and, implicitly, determines the values that the three phenotypes will have. There are as many sensitivity coefficients for a given flux as there are enzymes in the system. It can be shown that the sum of all such coefficients equals unity. n Since n, the number of enzymes, is large, this summation property results in the individual coefficients being small. -
Geoffrey Herbert Beale, MBE, FRS, FRSE 11 June 1913 - 16 October 2009
Geoffrey Herbert Beale, MBE, FRS, FRSE 11 June 1913 - 16 October 2009 Geoffrey Beale was recognized internationally as a leading protozoan geneticist with an all-absorbing love of genetics, stimulated in the early part of his career by either working with or meeting many of the key figures who laid the foundations of modern genetics in the 1930s and 1940s. His work on the genetics of the surface antigens of Paramecium provided a conceptual breakthrough in our understanding of the role of the environment, the cytoplasm and the expression of genes, and he continued his interest in the role of cytoplasmic elements in heredity through studies on both the endosymbionts and mitochondria of Paramecium. He pioneered the genetic analysis of parasitic protozoa with his work on Plasmodium, and this stimulated many other scientists to take a genetic approach with these experimentally challenging organisms. Geoffrey was born in Wandsworth, London, on 11 June 1913, the son of Herbert Walter Beale and Elsie Beale (née Beaton). His family included an elder brother (Hugh) and two younger sisters (Margaret and Joan). When he was about five years old the family moved to Wallington, Surrey, where he spent the rest of his childhood as well as staying there during his university undergraduate and postgraduate studies. He attended Sutton County School, Surrey from 1923 until he obtained his higher school certificates in mathematics, physics and chemistry in 1931. His main interest at that time was music and he briefly considered the possibility that he might make music his career and he became an accomplished pianist and organist. -
2007 Econnect V02 N1.Pdf (946.0Kb)
e_Connections feature technology in the news interview Vol. 2 No. 1 Spring 2007 Newsletter of the Virginia Bioinformatics Institute at Virginia Tech Why care about prokaryotes? On February 9, Professor William “Barny” Whitman of He continued: “We have the University of Georgia Department of Microbiology been able to estimate presented a seminar entitled, “The number and diversity of that prokaryotes bacteria on earth and why represent about 3.5 we care” at the Virginia to 5.5 x 1017 grams of Bioinformatics Institute carbon on the Earth In This Issue Conference Center. In as we know it today, the seminar, Dr. Whitman or about the same as Dr. William Whitman...............1 discussed the biological the biomass of plants. In terms of individuals, Technology Focus......................2 impact and contributions of prokaryotes, the dominant their numbers are 30 VBI in the News........................3 life form on earth whose about 4 to 6 x 10 . Dr.William Whitman evolution established the Carbon tracing studies VBI Scientific Publications.......3 central plan for the living have shown that 3.5 billion years ago, the level of organic cell. The presentation was carbon in the biosphere was more or less the same. Since Interview: Dr. Athel part of the Molecular Cell the eukaryotes evolved during the last two billion years, it’s Cornish-Bowden.......................4 Biology and Biotechnology apparent that the contribution of prokaryotes to the biomass (MCBB) seminar series. of the early earth was largely prokaryotic.” As a Ph.D. student at the University of Texas at Austin, The presence of an ancient and large population of prokaryotes Dr. -
Inborn Errors of Metabolism in Adults: a Diagnostic Approach to Neurological and Psychiatric Presentations
71 2 Inborn Errors of Metabolism in Adults: A Diagnostic Approach to Neurological and Psychiatric Presentations Fanny Mochel, Frédéric Sedel 2.1 Differences Between Paediatric and Adult Phenotypes – 72 2.2 General Approach to IEM In Adulthood – 72 2.3 Specific Approaches to Neuro metabolic Presentations in Adults – 76 References – 89 J.-M. Saudubray et al. (Eds.), Inborn Metabolic Diseases, DOI 10.1007/978-3-662-49771-5_2, © Springer-Verlag Berlin Heidelberg 2016 72 Chapter 2 · Inborn Errors of Metabolism in Adults: A Diagnostic Approach to Neurological and Psychiatric Presentations Late-onset forms of IEM presenting initially in adulthood are of- In addition, some clinical signs are highly suggestive of a ten unrecognised, so that their exact prevalence is unknown [1]. particular IEM or of a particular group of IEM. Some of these Most often they have psychiatric or neurological manifestations, ‘red flags’ are listed in . Table 2.2. 2 including atypical psychosis or depression, unexplained coma, Unfortunately, in many circumstances, highly specific peripheral neuropathy, cerebellar ataxia, spastic paraparesis, de- signs or symptoms are lacking and the presentation is that of mentia, movement disorders and epilepsy [2][3][4][5]. a less specific neurological or psychiatric disorder (epilepsy, Physicians caring for adult patients with IEM are also involved in cognitive decline, psychiatric signs). In such situations, the the management of those with early onset forms who reach diagnostic approach is based on the type of clinical signs, their adulthood. The transfer of such patients from paediatric to adult clinical course (acute, acute-relapsing, with diurnal variations, care raises a number of medical, dietetic and social concerns.