Appendix to National Recovery Plan for the Gouldian Finch (Erythrura
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Phylogeography of Finches and Sparrows
In: Animal Genetics ISBN: 978-1-60741-844-3 Editor: Leopold J. Rechi © 2009 Nova Science Publishers, Inc. Chapter 1 PHYLOGEOGRAPHY OF FINCHES AND SPARROWS Antonio Arnaiz-Villena*, Pablo Gomez-Prieto and Valentin Ruiz-del-Valle Department of Immunology, University Complutense, The Madrid Regional Blood Center, Madrid, Spain. ABSTRACT Fringillidae finches form a subfamily of songbirds (Passeriformes), which are presently distributed around the world. This subfamily includes canaries, goldfinches, greenfinches, rosefinches, and grosbeaks, among others. Molecular phylogenies obtained with mitochondrial DNA sequences show that these groups of finches are put together, but with some polytomies that have apparently evolved or radiated in parallel. The time of appearance on Earth of all studied groups is suggested to start after Middle Miocene Epoch, around 10 million years ago. Greenfinches (genus Carduelis) may have originated at Eurasian desert margins coming from Rhodopechys obsoleta (dessert finch) or an extinct pale plumage ancestor; it later acquired green plumage suitable for the greenfinch ecological niche, i.e.: woods. Multicolored Eurasian goldfinch (Carduelis carduelis) has a genetic extant ancestor, the green-feathered Carduelis citrinella (citril finch); this was thought to be a canary on phonotypical bases, but it is now included within goldfinches by our molecular genetics phylograms. Speciation events between citril finch and Eurasian goldfinch are related with the Mediterranean Messinian salinity crisis (5 million years ago). Linurgus olivaceus (oriole finch) is presently thriving in Equatorial Africa and was included in a separate genus (Linurgus) by itself on phenotypical bases. Our phylograms demonstrate that it is and old canary. Proposed genus Acanthis does not exist. Twite and linnet form a separate radiation from redpolls. -
Evolution of the P53-MDM2 Pathway Emma Åberg1, Fulvio Saccoccia1, Manfred Grabherr1, Wai Ying Josefin Ore1, Per Jemth1* and Greta Hultqvist1,2*
Åberg et al. BMC Evolutionary Biology (2017) 17:177 DOI 10.1186/s12862-017-1023-y RESEARCH ARTICLE Open Access Evolution of the p53-MDM2 pathway Emma Åberg1, Fulvio Saccoccia1, Manfred Grabherr1, Wai Ying Josefin Ore1, Per Jemth1* and Greta Hultqvist1,2* Abstract Background: The p53 signalling pathway, which controls cell fate, has been extensively studied due to its prominent role in tumor development. The pathway includes the tumor supressor protein p53, its vertebrate paralogs p63 and p73, and their negative regulators MDM2 and MDM4. The p53/p63/p73-MDM system is ancient and can be traced in all extant animal phyla. Despite this, correct phylogenetic trees including both vertebrate and invertebrate species of the p53/p63/p73 and MDM families have not been published. Results: Here, we have examined the evolution of the p53/p63/p73 protein family with particular focus on the p53/ p63/p73 transactivation domain (TAD) and its co-evolution with the p53/p63/p73-binding domain (p53/p63/p73BD) of MDM2. We found that the TAD and p53/p63/p73BD share a strong evolutionary connection. If one of the domains of the protein is lost in a phylum, then it seems very likely to be followed by loss of function by the other domain as well, and due to the loss of function it is likely to eventually disappear. By focusing our phylogenetic analysis to p53/p63/ p73 and MDM proteins from phyla that retain the interaction domains TAD and p53/p63/p73BD, we built phylogenetic trees of p53/p63/p73 and MDM based on both vertebrate and invertebrate species. -
Guia Para Observação Das Aves Do Parque Nacional De Brasília
See discussions, stats, and author profiles for this publication at: https://www.researchgate.net/publication/234145690 Guia para observação das aves do Parque Nacional de Brasília Book · January 2011 CITATIONS READS 0 629 4 authors, including: Mieko Kanegae Fernando Lima Favaro Federal University of Rio de Janeiro Instituto Chico Mendes de Conservação da Bi… 7 PUBLICATIONS 74 CITATIONS 17 PUBLICATIONS 69 CITATIONS SEE PROFILE SEE PROFILE All content following this page was uploaded by Fernando Lima Favaro on 28 May 2014. The user has requested enhancement of the downloaded file. Brasília - 2011 GUIA PARA OBSERVAÇÃO DAS AVES DO PARQUE NACIONAL DE BRASÍLIA Aílton C. de Oliveira Mieko Ferreira Kanegae Marina Faria do Amaral Fernando de Lima Favaro Fotografia de Aves Marcelo Pontes Monteiro Nélio dos Santos Paulo André Lima Borges Brasília, 2011 GUIA PARA OBSERVAÇÃO DAS AVES DO APRESENTAÇÃO PARQUE NACIONAL DE BRASÍLIA É com grande satisfação que apresento o Guia para Observação REPÚblica FEDERATiva DO BRASIL das Aves do Parque Nacional de Brasília, o qual representa um importante instrumento auxiliar para os observadores de aves que frequentam ou que Presidente frequentarão o Parque, para fins de lazer (birdwatching), pesquisas científicas, Dilma Roussef treinamentos ou em atividades de educação ambiental. Este é mais um resultado do trabalho do Centro Nacional de Pesquisa e Vice-Presidente Conservação de Aves Silvestres - CEMAVE, unidade descentralizada do Instituto Michel Temer Chico Mendes de Conservação da Biodiversidade (ICMBio) e vinculada à Diretoria de Conservação da Biodiversidade. O Centro tem como missão Ministério do Meio Ambiente - MMA subsidiar a conservação das aves brasileiras e dos ambientes dos quais elas Izabella Mônica Vieira Teixeira dependem. -
The Nature of Northern Australia
THE NATURE OF NORTHERN AUSTRALIA Natural values, ecological processes and future prospects 1 (Inside cover) Lotus Flowers, Blue Lagoon, Lakefield National Park, Cape York Peninsula. Photo by Kerry Trapnell 2 Northern Quoll. Photo by Lochman Transparencies 3 Sammy Walker, elder of Tirralintji, Kimberley. Photo by Sarah Legge 2 3 4 Recreational fisherman with 4 barramundi, Gulf Country. Photo by Larissa Cordner 5 Tourists in Zebidee Springs, Kimberley. Photo by Barry Traill 5 6 Dr Tommy George, Laura, 6 7 Cape York Peninsula. Photo by Kerry Trapnell 7 Cattle mustering, Mornington Station, Kimberley. Photo by Alex Dudley ii THE NATURE OF NORTHERN AUSTRALIA Natural values, ecological processes and future prospects AUTHORS John Woinarski, Brendan Mackey, Henry Nix & Barry Traill PROJECT COORDINATED BY Larelle McMillan & Barry Traill iii Published by ANU E Press Design by Oblong + Sons Pty Ltd The Australian National University 07 3254 2586 Canberra ACT 0200, Australia www.oblong.net.au Email: [email protected] Web: http://epress.anu.edu.au Printed by Printpoint using an environmentally Online version available at: http://epress. friendly waterless printing process, anu.edu.au/nature_na_citation.html eliminating greenhouse gas emissions and saving precious water supplies. National Library of Australia Cataloguing-in-Publication entry This book has been printed on ecoStar 300gsm and 9Lives 80 Silk 115gsm The nature of Northern Australia: paper using soy-based inks. it’s natural values, ecological processes and future prospects. EcoStar is an environmentally responsible 100% recycled paper made from 100% ISBN 9781921313301 (pbk.) post-consumer waste that is FSC (Forest ISBN 9781921313318 (online) Stewardship Council) CoC (Chain of Custody) certified and bleached chlorine free (PCF). -
A Review of the Distribution, Status and Ecology of the Star Finch Neochmia Ruficauda in Queensland
AUSTRALIAN 278 BIRD WATCHER AUSTRALIAN BIRD WATCHER 1998, 17, 278-289 A Review of the Distribution, Status and Ecology of the Star Finch Neochmia ruficauda in Queensland by GLENN H.OLMES, P.O. Box 1246, Atherton, Queensland 4883 Summary The Star Finch Neochmia ruficauda has been recorded in 35-37 one-degree blocks in Queensland. Most records concern the Edward River, Princess Charlotte Bay and Rockharnpton districts. Viable populations are probably now restricted to Cape York Peninsula. Typical habitat comprises grasslands or grassy open woodlands, near permanent water or subject to regular inundation. Some sites support shrubby regrowth caused by the clearing of formerly unsuitable denser woodlands. Recorded food items are all seeds, of five grass species and one sedge. Precise nest records are few, but large numbers of juveniles have been observed during the last two decades at Aurukun, Pormpuraaw, Kowanyarna and Princess Charlotte Bay. Threatening processes are discussed; livestock grazing in riparian situations is considered the most deleterious. Introduction The distribution, status and ecology of the Star Finch Neochmia ruficauda in Queensland require urgent review. Endemic to northern and eastern Australia, its populations have declined in most regions. Available evidence suggests that the greatest contraction in its distribution has occurred in Queensland (e.g. Blakers et al. 1984). It is extinct in New South Wales, but its distribution there was only oflirnited extent (Holmes 1996). The Star Finch is protected stringently in Queensland because it is gazetted as Endangered under the Nature Conservation Act 1992. This categorisation takes due account of 'biological vulnerability, extent of current knowledge ... and management needs'. -
Seasonal Stress Physiology and Body Condition Differ Among Co-Occurring Tropical Finch Ps Ecies Kimberly L
University of Wollongong Research Online Faculty of Science, Medicine and Health - Papers Faculty of Science, Medicine and Health 2013 Seasonal stress physiology and body condition differ among co-occurring tropical finch ps ecies Kimberly L. Maute University of Wollongong, [email protected] Kristine French University of Wollongong, [email protected] Sarah Legge Australian Wildlife Conservancy Lee Astheimer University of Wollongong, [email protected] Publication Details Maute, K. L., French, K., Legge, S. & Astheimer, L. (2013). Seasonal stress physiology and body condition differ among co-occurring tropical finch species. Journal of Comparative Physiology B: biochemical, systemic, and environmental physiology, 183 (8), 1023-1037. Research Online is the open access institutional repository for the University of Wollongong. For further information contact the UOW Library: [email protected] Seasonal stress physiology and body condition differ among co-occurring tropical finch ps ecies Abstract Seasonal changes in avian hormonal stress responses and condition are well known for common species found at temperate and arctic latitudes, but declining and tropical species are poorly studied. This study compares stress and condition measures of co-occurring declining and non-declining tropical grass finch species in Australia. We monitored declining Gouldian finches (Erythrura gouldiae) and non-declining long-tailed and masked finches (Poepila acuticauda and P. personata) during two seasons that are potentially stressful: peak breeding (early dry season when food is plentiful) and moult (late dry to early wet season when food may be scarce). We measured body condition (muscle and fat), haematocrit, and stress response to capture using plasma corticosterone and binding globulin concentrations. -
NESTLING MOUTH Marklngs It '" "' of OLD WORLD FINCHES ESTLLU MIMICRY and COEVOLUTION of NESTING
NESTLING MOUTH MARklNGS It '" "' OF OLD WORLD FINCHES ESTLLU MIMICRY AND COEVOLUTION OF NESTING r - .. ;.-; 5.i A&+.FINCHES .-. '4 AND THEIR VIDUA BROOD PARASITES - . , , . :.. - i ' -, ,' $*.$$>&.--: 7 -.: ',"L dt$=%>df;$..;,4;x.;b,?b;.:, ;.:. -, ! ,I Vt .., . k., . .,.-. , .is: 8, :. BY ERT B. PAYNE MISCELLANEOUS PUBLICATIONS MUSEUM OF ZOOLOGY, UNIVERSITY OF MICHIGAN, NO. 194 Ann ntwi day, 2005 lSSN 0076-8405 PUBLICATIONS OF THE MUSEUM OF ZOOLOGY, UNIVERSITY OF MICHIGAN NO. 194 J. B. BLJR(.H,Editor JI.:NNIFERFBLMLEE, Assistcint Editor The publications of the Museum of Zoology, The University of Michigan, consist primarily of two series-the Mi.scel/aneous Pziblications and the Occa.siona1 Papers. Both series were founded by Dr. Bryant Walker, Mr. Bradshaw H. Swales, and Dr. W.W. Newcomb. Occasionally thc Museum publishes contributions outside of these series; beginning in 1990 thcsc arc titled Special Publications and arc numbered. All submitted manuscripts to any of the Museum's publications receive external review. The Occasional Papers, begun in 1913, serve as a medium for original studies based principally upon the collections in the Museum. They arc issued separately. When a sufficient number of pages has been printed to make a volume, a title page, table of contents, and an index are supplied to libraries and individuals on the mailing list for the series. The Miscellaneotls Pt~hlication.~,initiated in 1916, include monographic studies, papers on field and museum techniques, and other contributions not within the scope of the Occasional Papers, and are published separately. It is not intended that they be grouped into volurnes. Each number has a title page and, when necessary, a table of contents. -
Monitoring Indicates Greater Resilience for Birds Than for Mammals in Kakadu 8 National Park, Northern Australia
1 2 3 4 5 6 7 Monitoring indicates greater resilience for birds than for mammals in Kakadu 8 National Park, northern Australia. 9 10 11 12 13 J.C.Z. WoinarskiA,B,C,D, A. FisherA,B, M. ArmstrongA,E, K. BrennanA, A.D. GriffithsA, B. HillA, J. Low ChoyA, 14 D. MilneA, A. StewartA,C, S. YoungA, S. WardA, S. WinderlichF, M. ZiembickiA,G. 15 16 17 18 A. Department of Natural Resources Environment, the Arts and Sport, PO Box 496, Palmerston, Northern 19 Territory, Australia, 0831. 20 21 B. National Environmental Research Program North Australian Hub, Charles Darwin University, Darwin, 22 Northern Territory, 0909. 23 24 C. Research Institute for the Environment and Livelihoods, Charles Darwin University, Darwin, Northern 25 Territory, 0909. 26 27 D. Current address: PO Box 148, Christmas Island, Western Australia, 6798. 28 29 E. Current address: tbc 30 31 F. Kakadu National Park, PO Box 71, Jabiru, Northern Territory, 0886. 32 33 G. Current address: School of Tropical and Marine Biology, James Cook University, PO Box 6811, Cairns, 34 Queensland, 4870. 35 36 37 38 39 Corrssponding author: John Woinarski – [email protected], 08 9164 7905. 40 41 1 42 43 44 Abstract 45 46 Context. A previous study reported major declines for native mammal species from Kakadu National 47 Park, over the period 2001-2009. The extent to which this result may be symptomatic of more 48 pervasive biodiversity decline was unknown. 49 50 Aims. Our primary aim was to describe trends in the abundance of birds in Kakadu over the period 51 2001-2009. -
Feeding Passerine and Psittacine Birds
Chapter 72 Feeding Passerine and Psittacine Birds George V. Kollias Heidi Wearne Kollias “Of all forms of life, birds are the most beautiful, most musical, most admired, most watched and most defended. Without them much of our world would seem ominously lifeless and silent.” Roger Tory Peterson toe paralysis,” which is not observed in cockatiel chicks. INTRODUCTION Cockatiels lack pigmentation (achromatosis) in their primary feathers as a result of riboflavin deficiency (Grau and One avian medicine reference states that 75% of the medical Roudybush, 1985). Although differences of this type exist ex- problems seen in companion and aviary birds have at least a perimentally, many prepared foods overcome these differences partial nutritional basis (MacWhirter, 1994). Dietary-induced by supplying levels of nutrients well in excess of the minimum deficiencies and excesses may lead to immune dysfunction, requirement for chickens. increased susceptibility to infectious diseases and metabolic and Second, and more important, many people perceive that all- biochemical derangements that manifest clinically as nutrition- seed diets (particularly diets composed of only one seed type, al secondary hyperparathyroidism, thyroid hyperplasia (dyspla- e.g., millet or sunflower) and diets composed of or are heavily sia), hemochromatosis and a variety of other problems. supplemented with, fruits, vegetables and other human foods Dietary-induced diseases frequently occur in companion and are complete foods for birds. In reality, most commercially aviary psittacine and passerine birds for several reasons. First, available seeds are deficient in certain limiting nutrients (e.g., until recently, specific nutritional requirements for these birds specific amino acids, vitamins and trace and macrominerals were unknown. -
Northern Territory, Top End
Northern Territory, Top End Ian Reid and Paul Coddington, 7-16 Aug 2020 Preamble Six or seven years into our Australian sojourn I still had a few birds to collect in the south, but lifers close to home were becoming harder and harder to come by. In contrast, the far north still held bags of new birds. In fact even in pre-birding days growing up in Perth I had never been much beyond the Tropic of Capricorn, so there are vast swathes of Australia waiting for me to explore. In both 2018 and 2019 I had tentative plans to go to NT, but those plans were never realised. In 2020, I had a trip to Peru with UK birding mate Steve lined up, but that was cancelled in June because of covid. With very little birding in the first half of the year largely because of lockdown in SA, and my main birding event for the latter part cancelled, I began to wonder if I’d get any birding at all in 2020. But by early July the signs were good that SA, NT, Tas, WA, and maybe Qld had got their covid outbreaks under control and restrictions and border controls started to relax. The date for opening the NT border was set to 23rd July and I hatched a plan for a week of Top End birding in August once the border had opened and flights resumed. Paul Coddington, my traveling/birding companion on various SA twitches and a couple of outback camping trips, had birded NT in 2014 but missed quite a bit of stuff, so he was keen to join me. -
Indicus Biological Consultants
Indicus Biological Consultants Darwin City Waterfront (Darwin Wharf) Redevelopment Terrestrial fauna assessment December 2003 James Smith Ronald Firth This document is and shall remain the property of Indicus Biological Consultants. The document may only be used for the purposes for which it was commissioned and in accordance with the Terms of the Engagement for the commission. Unauthorised use of this document in any form whatsoever is prohibited. 29 Aralia Street, Nightcliff phone: (08) 8411 0350 email: [email protected] Contents www.indicusbc.netfirms.com Terrestrial Fauna Assessment Darwin City Waterfront Redevelopment December 2003 CONTENTS INTRODUCTION .....................................................................................................................................................................3 SURVEY METHODS ................................................................................................................................................................3 Bird counts ........................................................................................................................................................................3 Active Searches .................................................................................................................................................................3 Incidental records ..............................................................................................................................................................4 Bat -
Abstracts of Those Ar- Dana L Moseley Ticles Using Packages Tm and Topicmodels in R to Ex- Graham E Derryberry Tract Common Words and Trends
ABSTRACT BOOK Listed alphabetically by last name of presenting author Oral Presentations . 2 Lightning Talks . 161 Posters . 166 AOS 2018 Meeting 9-14 April 2018 ORAL PRESENTATIONS Combining citizen science with targeted monitoring we argue how the framework allows for effective large- for Gulf of Mexico tidal marsh birds scale inference and integration of multiple monitoring efforts. Scientists and decision-makers are interested Evan M Adams in a range of outcomes at the regional scale, includ- Mark S Woodrey ing estimates of population size and population trend Scott A Rush to answering questions about how management actions Robert J Cooper or ecological questions influence bird populations. The SDM framework supports these inferences in several In 2010, the Deepwater Horizon oil spill affected many ways by: (1) monitoring projects with synergistic ac- marsh birds in the Gulf of Mexico; yet, a lack of prior tivities ranging from using approved standardized pro- monitoring data made assessing impacts to these the tocols, flexible data sharing policies, and leveraging population impacts difficult. As a result, the Gulf of multiple project partners; (2) rigorous data collection Mexico Avian Monitoring Network (GoMAMN) was that make it possible to integrate multiple monitoring established, with one of its objectives being to max- projects; and (3) monitoring efforts that cover multiple imize the value of avian monitoring projects across priorities such that projects designed for status assess- the region. However, large scale assessments of these ment can also be useful for learning or describing re- species are often limited, tidal marsh habitat in this re- sponses to management activities.