Pseudomonas Spp. and Other Psychrotrophic

Total Page:16

File Type:pdf, Size:1020Kb

Pseudomonas Spp. and Other Psychrotrophic Pesq. Vet. Bras. 39(10):807-815, October 2019 DOI: 10.1590/1678-5150-PVB-6037 Original Article Livestock Diseases ISSN 0100-736X (Print) ISSN 1678-5150 (Online) PVB-6037 LD Pseudomonas spp. and other psychrotrophic microorganisms in inspected and non-inspected Brazilian Minas Frescal cheese: proteolytic, lipolytic and AprX production potential1 Pedro I. Teider Junior2, José C. Ribeiro Júnior3* , Eric H. Ossugui2, Ronaldo Tamanini2, Juliane Ribeiro2, Gislaine A. Santos2 2 and Vanerli Beloti2 , Amauri A. Alfieri ABSTRACT.- Teider Junior P.I., Ribeiro Júnior J.C., Ossugui E.H., Tamanini R., Ribeiro J., Santos G.A., Pseudomonas spp. and other psychrotrophic microorganisms Pseudomonas spp. and other psychrotrophic in inspected and non-inspected Brazilian Minas Frescal cheese: proteolytic, lipolytic andAlfieri AprX A.A. production& Beloti V. 2019. potential . Pesquisa Veterinária Brasileira 39(10):807-815. Instituto microorganisms in inspected and non- Nacional de Ciência e Tecnologia para a Cadeia Produtiva do Leite, Universidade Estadual de inspected Brazilian Minas Frescal cheese: Londrina, Rodovia Celso Garcia Cid PR-445 Km 380, Cx. Postal 10.011, Campus Universitário, proteolytic, lipolytic and AprX production Londrina, PR 86057-970, Brazil. E-mail: [email protected] The most consumed cheese in Brazil, Minas Frescal cheese (MFC) is highly susceptible to potential microbial contamination and clandestine production and commercialization can pose a risk to consumer health. The storage of this fresh product under refrigeration, although more appropriate, may favor the growth of spoilage psychrotrophic bacteria. The objective of this [Pseudomonas spp. e outros micro-organismos study was to quantify and compare Pseudomonas spp. and other psychrotrophic bacteria in inspected and non-inspected MFC samples, evaluate their lipolytic and proteolytic activities and e não inspecionados: potencial proteolítico, lipolítico e their metalloprotease production potentials. Twenty MFC samples were evaluated: 10 inspected psicrotróficos em queijos Minas Frescalprodução inspecionados de AprX.]. and 10 non-inspected. Counts of psychrotrophic bacteria and Pseudomonas spp., evaluation of Teider Junior P.I., Ribeiro Júnior J.C., Ossugui E.H., of alkaline metalloprotease (AprX) were assessed. The mean total psychrotrophic counts thewere proteolytic 1.07 (±2.18) and ×lipolytic 109CFU/g potential in the of inspected the isolates, samples and identification and 4.5 (±5.86) of potential × 108CFU/g producers in the V. 807- spp. 815 Pseudomonas Tamanini R., Ribeiro J., Santos G.A., Alfieri A.A. & Beloti was 6.86 (±18.6) × 105 and 2.08 (±3.65) × 106 CFU/g for the inspected and non-inspected MFC non-inspected, with no significant difference (p=0.37). The averagePseudomonas score of spp. represented 0.06% and 0.004% of psychrotrophic bacteria found in inspected and non-inspected MFC samples, respectively,respectively. with Collectively, no significant 694 psychrotrophic difference (p=0.1). strains and 47 Pseudomonas spp. were isolated, of which 59.9% and 68.1% were simultaneously proteolytic and lipolytic, respectively. Of the 470 psychrotrophs isolated from inspected and 224 from non-inspected cheese samples, 5.74% and 2.23% contained aprX, respectively, while 100 and 86.96% of the Pseudomonas spp. isolates in inspected and non-inspected cheese samples contained the gene. The production potential of AprX did not, however, determine the proteolytic activity on plates of these isolates under the conditions evaluated in this study. Of total, 65.63% of the psychrotrophs that contained aprX Pseudomonas spp., using gene were confirmedSerratia as Raoultella ornithinolyticagenus-specific PCR. PhylogeneticAcinetobacter analysis of schindleri the 16S rRNA gene of the other psychrotrophs Psychrobacterthat were potential sanguinis producers of AprXLeuconostoc identified mesenteroides them as spp. (n=7), (n=1), and (n=1) in the inspected samples and 1 Received on February 18, 2019. (n=1) and (n=1) in the non-inspected Accepted for publication on April 1, 2019. 2 Instituto Nacional de Ciência e Tecnologia para a Cadeia Produtiva do Leite (INCT-Cadeia do Leite), Universidade Estadual de Londrina (UEL), Rodovia 3 Escola de Medicina Veterinária e Zootecnia, Universidade Federal do Celso Garcia Cid PR-445 Km 380, Cx. Postal 10.011, Campus Universitário, Tocantins (UFT), BR-153 Km 112, Zona Rural, Araguaína, TO 77804-970, Londrina, PR 86057-970, Brazil. Brazil. *Corresponding author: [email protected] 807 808 Pedro I. Teider Junior et al. samples. The production conditions of Brazilian MFC of these samples, while meeting the Pseudomonas and other spoilage-related psychrotrophs. Thus, stricter hygienic measures are required during the formal production legalof this determinations, type of cheese. are not sufficient to control INDEX TERMS: Pseudomonas spp., psychrotrophic, microorganisms, Minas Frescal cheese, cheese, AprX production, alkaline metalloprotease, proteolysis, lipolysis. RESUMO.- [Pseudomonas spp. e outros micro-organismos TERMOS DE INDEXAÇÃO: Pseudomonas spp., micro-organismos, psicrotróficos em queijos Minas Frescal inspecionados e não inspecionados: potencial proteolítico, lipolítico e produção alcalina, proteólise, lipólise. de AprX.] O mais consumido no Brasil, o queijo Minas Frescal psicrotróficos, queijo, Minas Frescal, produção de AprX, metaloprotease (QMF) é altamente suscetível à contaminação microbiana e a produção e comercialização clandestina podem representar INTRODUCTION um risco para a saúde do consumidor. O armazenamento deste produto fresco sob refrigeração, embora mais apropriado, product obtained by the enzymatic coagulation of milk with Byrennet definition, and/or Brazilian other suitable Minas Frescal coagulating cheese (MFC)enzymes, is a freshwith compararpode favorecer Pseudomonas a multiplicação de bactérias psicrotróficas powdered milk, cream, milk solids, sodium chloride, and emdeteriorantes. amostras de O QMF objetivo inspecionadas deste estudo e não foi inspecionadas, quantificar e or without supplementation with specific lactic bacteria, avaliar o potencial lipolítico, spp. e proteolíticooutras bactérias e de psicrotróficas produção de (25 to 44.9% fat) cheese with very high moisture content metaloprotease alcalina. Vinte amostras de QMF foram avaliadas: calcium(not less chloride than 55.0%) (Brasil (Brasil 1997). 2004). It is classifiedThe production as a semi-fat of this 10 inspecionadas e 10 não inspecionadas. Foram avaliadas as type of cheese in Brazil is carried out formally by dairies that Pseudomonas spp., o follow the legal stipulations of the “Ministério da Agricultura, Pecuária e Abastecimento” (Brasil 1997) and mainly small milk decontagens potenciais de produtoresbactérias psicrotróficas de metaloprotease e alcalina (AprX). producers, with the objective of adding value and increases potencial proteolítico e lipolítico dos isolados e a identificação the shelf life of milk through the preparation of derivatives. de 1,07 (±2,18) × 109UFC/g nas amostras inspecionadas e The MFC is quite susceptible to microbial contamination 4,5A média (±5,86) total × 10 das8UFC/g contagens nas não de inspecionadas, bactérias psicrotróficas sem diferença foi when prepared using raw milk, or during or after processing (Carvalho et al. 2007). Moreover, it can be a source of food Pseudomonas spp. foi de pathogens (Campos et al. 2017). 6,86 (±18,6) × 105 e 2,08 (±3,65) × 106UFC/g para as amostras In addition to pathogenic microorganisms, proteolytic QMFsignificativa inspecionadas (p=0,37). e não A- inspecionadas,média de respectivamente, sem and/or lipolytic microorganisms, mainly psychrotrophs, may spp. representaram Pseudomonas interfere with the quality of the MFC, since as it is a fresh product, refrigeration is necessary for its storage. When diferença significativa (p=0,1). em amostras QMF inspecionadas e não-inspecionadas, present in the raw material, psychrotrophic bacteria reduce respectivamente.0,06% e 0,004% de Das bactérias amostras psicrotróficas inspecionadas encontradas e não the cheese improper for consumption (Murphy et al. 2016). e 47 Pseudomonas spp., dos quais 59,9% e 68,1% foram the Asindustrial the degradation yield, flavor, of and proteins aroma, resultsbeing able in non-acidto render simultaneamenteinspecionadas, foram proteolíticos isoladas e 694 lipolíticos, colônias respectivamente. psicrotróficas metabolites, protease activity confers a bitter taste and putrid inspecionados e dos 224 isolados das não inspecionadas, 5,74% eDos 2,23% 470 continhamisolados de o psicrotróficosgene aprX, respectivamente, das amostras enquantode queijo smellcoagulation, to the cheese. and greater Undesirable loss of effects casein are fragments also influenced in the 100 e 86,96% das Pseudomonas spp. isoladas em amostras byserum, the reductionrequiring 20-30of the percentintegrity more of milk milk proteins, per kilo ofdeficient cheese de queijo inspecionadas e não inspecionadas continham o potencial de expressão de AprX. Esse potencial, no entanto, não Alkaline metalloprotease (AprX), which is heat-resistant, determinou a atividade proteolítica em placas desses isolados (Samaržijais considered et theal. 2012). main microbial protease, and is encoded by nas condições avaliadas neste estudo. Do total, 65,63% dos aprX. This gene is found in various proteolytic bacteria, such aprX as Pseudomonas spp. and Serratia spp. (Dufour et al. 2008, como Pseudomonas Marchand et al. 2009, Bagliniere et al. 2013). This enzyme is psicrotróficos
Recommended publications
  • Succession and Persistence of Microbial Communities and Antimicrobial Resistance Genes Associated with International Space Stati
    Singh et al. Microbiome (2018) 6:204 https://doi.org/10.1186/s40168-018-0585-2 RESEARCH Open Access Succession and persistence of microbial communities and antimicrobial resistance genes associated with International Space Station environmental surfaces Nitin Kumar Singh1, Jason M. Wood1, Fathi Karouia2,3 and Kasthuri Venkateswaran1* Abstract Background: The International Space Station (ISS) is an ideal test bed for studying the effects of microbial persistence and succession on a closed system during long space flight. Culture-based analyses, targeted gene-based amplicon sequencing (bacteriome, mycobiome, and resistome), and shotgun metagenomics approaches have previously been performed on ISS environmental sample sets using whole genome amplification (WGA). However, this is the first study reporting on the metagenomes sampled from ISS environmental surfaces without the use of WGA. Metagenome sequences generated from eight defined ISS environmental locations in three consecutive flights were analyzed to assess the succession and persistence of microbial communities, their antimicrobial resistance (AMR) profiles, and virulence properties. Metagenomic sequences were produced from the samples treated with propidium monoazide (PMA) to measure intact microorganisms. Results: The intact microbial communities detected in Flight 1 and Flight 2 samples were significantly more similar to each other than to Flight 3 samples. Among 318 microbial species detected, 46 species constituting 18 genera were common in all flight samples. Risk group or biosafety level 2 microorganisms that persisted among all three flights were Acinetobacter baumannii, Haemophilus influenzae, Klebsiella pneumoniae, Salmonella enterica, Shigella sonnei, Staphylococcus aureus, Yersinia frederiksenii,andAspergillus lentulus.EventhoughRhodotorula and Pantoea dominated the ISS microbiome, Pantoea exhibited succession and persistence. K. pneumoniae persisted in one location (US Node 1) of all three flights and might have spread to six out of the eight locations sampled on Flight 3.
    [Show full text]
  • Growth and Adaptation of Microorganisms on the Cheese Surface Christophe Monnet, Sophie Landaud-Liautaud, Pascal Bonnarme, Dominique Swennen
    View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Archive Ouverte en Sciences de l'Information et de la Communication Growth and adaptation of microorganisms on the cheese surface Christophe Monnet, Sophie Landaud-Liautaud, Pascal Bonnarme, Dominique Swennen To cite this version: Christophe Monnet, Sophie Landaud-Liautaud, Pascal Bonnarme, Dominique Swennen. Growth and adaptation of microorganisms on the cheese surface. FEMS Microbiology Letters, Wiley-Blackwell, 2015, 362 (1), pp.1-9. 10.1093/femsle/fnu025. hal-01535275 HAL Id: hal-01535275 https://hal.archives-ouvertes.fr/hal-01535275 Submitted on 28 May 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. 1 Growth and adaptation of microorganisms on the cheese surface 2 3 4 Christophe Monnet1,2, Sophie Landaud2,1, Pascal Bonnarme1,2 & Dominique Swennen3,4 5 6 1 INRA, UMR782 Génie et Microbiologie des Procédés Alimentaires, 78370 Thiverval- 7 Grignon, France 8 2 AgroParisTech, UMR782 Génie et Microbiologie des Procédés Alimentaires, 78370 9 Thiverval-Grignon, France 10 3 INRA, UMR1319 Micalis, 78370 Thiverval-Grignon, France 11 4 AgroParisTech, UMR1319 Micalis, 78370 Thiverval-Grignon, France 12 13 * Corresponding author.
    [Show full text]
  • Compositional and Functional Comparisons of the Microbiota in the Colostrum and Mature Milk of Dairy Goats
    Compositional and functional comparisons of the microbiota in the colostrum and mature milk of dairy goats Zhannur Niyazbekova Northwest Agriculture and Forestry University Xiao-Ting Yao Northwest Agriculture and Forestry University Ming-Jie Liu Northwest Agriculture and Forestry University Nomin Bold Northwest Agriculture and Forestry University Juan-Zhen Tong Northwest Agriculture and Forestry University Jian-Jun Chang Qinghai University Ying Wen Qinghai University Li Li Qinghai University Yong Wang Qinghai University De-Kun Chen Northwest Agriculture and Forestry University Wen-Tao Ma ( [email protected] ) Northwest Agriculture and Forestry University https://orcid.org/0000-0002-4747-1489 Research article Keywords: Goat milk, Colostrum, Mature milk, Milk microbiota, Microbial diversity Posted Date: May 12th, 2020 DOI: https://doi.org/10.21203/rs.3.rs-26653/v1 Page 1/20 License: This work is licensed under a Creative Commons Attribution 4.0 International License. Read Full License Page 2/20 Abstract Background Goat milk is essential for the initial development of kids by providing a great source of commensal bacteria. Here we analyzed the microbiota of goat colostrum which was collected daily for ve days post delivery and mature milk collected at the 7th, 10th, 20nd, 30th, 40th, 50th and 60th days, respectively, from three farms of Shaanxi province. Results The result showed that microbial alpha diversity was higher in the mature milk compared with that in the colostrum. According to taxonomy results, Proteobacteria, Firmicutes,
    [Show full text]
  • Neonatal Septicemia Caused by a Rare Pathogen: Raoultella Planticola
    Chen et al. BMC Infectious Diseases (2020) 20:676 https://doi.org/10.1186/s12879-020-05409-5 CASE REPORT Open Access Neonatal septicemia caused by a rare pathogen: Raoultella planticola - a report of four cases Xianrui Chen1,2,3, Shaoqing Guo1,2,3* , Dengli Liu1,2,3 and Meizhen Zhong1,2,3 Abstract Background: Raoultella planticola(R.planticola) is a very rare opportunistic pathogen and sometimes even associated with fatal infection in pediatric cases. Recently,the emergence of carbapenem resistance strains are constantly being reported and a growing source of concern for pediatricians. Case presentation: We reported 4 cases of neonatal septicemia caused by Raoultella planticola. Their gestational age was 211 to 269 days, and their birth weight was 1490 to 3000 g.The R. planticola infections were detected on the 9th to 27th day after hospitalizationandoccuredbetweenMayandJune.They clinically manifested as poor mental response, recurrent cyanosis, apnea, decreased heart rate and blood oxygen, recurrent jaundice, fever or nonelevation of body temperature. The C-reactive protein and procalcitonin were elevated at significantly in the initial phase of the infection,and they had leukocytosis or leukopenia. Prior to R.planticola infection,all of them recevied at least one broad-spectrum antibiotic for 7- 27d.All the R.planticola strains detected were only sensitive to amikacin, but resistant to other groups of drugs: cephalosporins (such as cefazolin, ceftetan,etc) and penicillins (such as ampicillin-sulbactam,piperacillin, etc),and even developed resistance to carbapenem. All the infants were clinically cured and discharged with overall good prognosis. Conclusion: Neonatal septicemia caused by Raoultella planticola mostly occured in hot and humid summer, which lack specific clinical manifestations.
    [Show full text]
  • Identification of Raoultella Terrigena As a Rare Causative Agent of Subungual Abscess Based on 16S Rrna and Housekeeping Gene Sequencing
    Hindawi Publishing Corporation Canadian Journal of Infectious Diseases and Medical Microbiology Volume 2016, Article ID 3879635, 4 pages http://dx.doi.org/10.1155/2016/3879635 Case Report Identification of Raoultella terrigena as a Rare Causative Agent of Subungual Abscess Based on 16S rRNA and Housekeeping Gene Sequencing Yu Wang,1 Xiawei Jiang,1 Zemin Xu,2 Chaoqun Ying,1 Wei Yu,1 and Yonghong Xiao1 1 State Key Laboratory for Diagnosis and Treatment of Infectious Diseases, Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, The First Affiliated Hospital, School of Medicine, Zhejiang University, Hangzhou, China 2Ningbo Institute of Microcirculation and Henbane, Ningbo, China Correspondence should be addressed to Yonghong Xiao; [email protected] Received 8 October 2015; Revised 28 April 2016; Accepted 15 May 2016 Academic Editor: Maurizio Sanguinetti Copyright © 2016 Yu Wang et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. A 63-year-old-man was admitted to our hospital with severe subungual abscess. Bacteria were isolated from pus samples, and an inconsistent identification was shown by VITEK 2 system and MALDI-TOF mass spectrometry as Raoultella planticola and Raoultella terrigena, respectively. Molecular identification by 16S rRNA sequencing suggested that the isolate is R. terrigena,and this was further demonstrated by sequencing three housekeeping genes (rpoB, gyrA,andparC) with phylogenetic analysis. To our knowledge, this is the first report of subungual abscess caused by R. terrigena, a rare case of human infection due to soil bacterium.
    [Show full text]
  • CTX-M-9 Group ESBL-Producing Raoultella Planticola Nosocomial
    Tufa et al. Ann Clin Microbiol Antimicrob (2020) 19:36 https://doi.org/10.1186/s12941-020-00380-0 Annals of Clinical Microbiology and Antimicrobials CASE REPORT Open Access CTX-M-9 group ESBL-producing Raoultella planticola nosocomial infection: frst report from sub-Saharan Africa Tafese Beyene Tufa1,2,3*† , Andre Fuchs2,3†, Torsten Feldt2,3, Desalegn Tadesse Galata1, Colin R. Mackenzie4, Klaus Pfefer4 and Dieter Häussinger2,3 Abstract Background: Raoultella are Gram-negative rod-shaped aerobic bacteria which grow in water and soil. They mostly cause nosocomial infections associated with surgical procedures. This case study is the frst report of a Raoultella infec- tion in Africa. Case presentation We report a case of a surgical site infection (SSI) caused by Raoultella planticola which developed after caesarean sec- tion (CS) and surgery for secondary small bowel obstruction. The patient became febrile with neutrophilia (19,157/µL) 4 days after laparotomy and started to develop clinical signs of a SSI on the 8 th day after laparotomy. The patient con- tinued to be febrile and became critically ill despite empirical treatment with ceftriaxone and vancomycin. Raoultella species with extended antimicrobial resistance (AMR) carrying the CTX-M-9 β-lactamase was isolated from the wound discharge. Considering the antimicrobial susceptibility test, ceftriaxone was replaced by ceftazidime. The patient recovered and could be discharged on day 29 after CS. Conclusions: Raoultella planticola was isolated from an infected surgical site after repeated abdominal surgery. Due to the infection the patient’s stay in the hospital was prolonged for a total of 4 weeks. It is noted that patients under- going surgical and prolonged inpatient treatment are at risk for infections caused by Raoultella.
    [Show full text]
  • Severe Pansinusitis Due to Raoultella Ornithinolytica
    American Journal of Infectious Diseases Case Report Severe Pansinusitis Due to Raoultella Ornithinolytica Mitchell R. Gore Department of Otolaryngology, State University of New York-Upstate Medical University, Syracuse, NY, USA Article history Abstract: Raoultella ornithinolytica is a gram -negative aerobic bacterium Received: 23-09-2017 typically found in plants, soil and water. Reports of Raoultella Revised: 05-12-2017 ornithinolytica causing infections in humans, especially in the head and Accepted: 20-12-2017 neck, are rare. Herein we report a case of a woman with severe septal deviation, chronic headaches and facial pain who was revealed to have Tel: +1 315 492 3741 Fax: +1 315 492 5791 Raoultella ornithinolytica pansinusitis incidentally noted during an Email: [email protected] endoscopic septoplasty. Raoultella ornithinolytica was isolated from cultures of the diffuse purulent drainage found in her maxillary and ethmoid sinuses. This case indicates that while a rare cause of head and neck infection in humans, Raoultella ornithinolytica can be found as the causative pathogen in severe sinusitis. Keywords: Raoultella ornithinolytica , Sinusitis, Infection Introduction distress. Head and neck and cranial nerve examinations were normal. Nasal endoscopy revealed severe bilateral Raoultella ornithinolytica is a member of a genus of inferior turbinate hypertrophy and severe septal deviation Gram-negative, oxidase-negative, aerobic, nonmotile, causing bilateral nasal obstruction. The inferior turbinate capsulated, facultatively anaerobic rods closely related to hypertrophy and septal deviation were so significant that the Klebsiella genus in the Enterobacteriaceae family. the middle meatus could not be visualized. Given the The genus is named after noted French bacteriologist patient’s complaints she was counseled on the risks, Didier Raoult (Drancourt et al.
    [Show full text]
  • Psychrobacter Arenosus Bacteremia After Blood Transfusion, France
    DISPATCHES rapidly increased to 40°C) and had chills and headache. Psychrobacter The transfusion was stopped and the patient transferred to the Department of Internal Medicine. At examination, there arenosus was no hypotension, jaundice, or red urine. Standard laboratory testing showed no ABO Bacteremia incompatibility, hemoglobinemia, hemoglobinuria, and coagulation disorders. According to recommendations after Blood of the Agence Nationale de Sécurité du Médicament Transfusion, (Saint-Denis, France), 3 sets of aerobic and anaerobic blood cultures (Bactec; Becton Dickinson, Pont de Clay, France France) for the recipient (1 immediately and 2 others 4 hours later) and the remaining part of the third erythrocyte Yvan Caspar, Christine Recule, Patricia Pouzol, unit were sent to the bacteriology laboratory for culture. Bruno Lafeuillade, Marie-Reine Mallaret, Gram staining of a blood smear prepared from the third Max Maurin, and Jacques Croize erythrocyte unit showed a large number (≈106 CFU/mL) of gram-variable coccobacilli. We report a case of transfusion-associated bactere- Samples were placed on Columbia blood agar mia caused by Psychrobacter arenosus. This psychrotoler- ant bacterium was previously isolated in 2004 from coastal (bioMérieux, Marcy L’Etoile, France) and incubated at sea ice and sediments in the Sea of Japan, but not from 37°C in anaerobic or 5% CO2–enriched atmospheres. humans. P. arenosus should be considered a psychrotoler- Sample inoculated into blood culture bottles were ant bacterial species that can cause transfusion-transmitted incubated at 37°C under aerobic and anaerobic conditions bacterial infections. (Figure). The aerobic blood culture bottle of the first sample obtained from the recipient and aerobic cultures of the third erythrocyte unit enabled isolation of the same acteria are the leading cause of transfusion-transmitted gram-variable coccobacilli after incubation for 48 hours infections (1).
    [Show full text]
  • Comparison Between Vitek MS, Bruker Biotyper, Vitek2, and API20E for Differentiation of Species of the Genus Raoultella
    European Journal of Clinical Microbiology & Infectious Diseases (2019) 38:467–470 https://doi.org/10.1007/s10096-018-03444-4 ORIGINAL ARTICLE Comparison between Vitek MS, Bruker Biotyper, Vitek2, and API20E for differentiation of species of the genus Raoultella Carlos Ruiz de Alegría Puig1 & Marina Fernández Torres1 & Eduardo Marfil-Pérez2,3 & María Isabel Rodríguez Ferández1 & Manuel Causse Del Río2,3 & Jesús Agüero Balbín1,4 & Luis Martínez-Martínez2,3,5 Received: 11 September 2018 /Accepted: 29 November 2018 /Published online: 25 January 2019 # Springer-Verlag GmbH Germany, part of Springer Nature 2019 Abstract Rapid and reliable identification of microorganisms in the clinical laboratory is essential for an early and accurate diagnosis guiding timely therapy. However, conventional methods are sometimes unreliable and show controversial outcomes. Matrix- assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS) has been reported as a rapid and reliable method for identification of bacteria and fungi isolated from clinical samples. Members of the genus Raoultella are increasingly recognized as clinically relevant. There are difficulties in their identification at the species level since sequencing the 16S rRNA or the rpoB genes does not show conclusive results. The aim of this study has been to compare two MALDI-TOF MS systems (Vitek MS and Bruker Biotyper) with Vitek2 and API20E systems for differentiation of Raoultella species. A collection of 97 clinical isolates of Raoultella species was identified with Vitek MS, in parallel with Vitek2 and API, and finally with Bruker Biotyper. Among the two most widely used MALDI-TOF MS platforms, results obtained with Vitek MS were slightly superior to those obtained with the Bruker Biotyper system, with sensitivities and specificities of 98.9/57.9% and 98.8/37.0%, respectively.
    [Show full text]
  • Neonatal Enteral Feeding Tubes As Loci for Colonisation by Members of The
    BMC Infectious Diseases BioMed Central Research article Open Access Neonatal enteral feeding tubes as loci for colonisation by members of the Enterobacteriaceae Edward Hurrell1, Eva Kucerova1, Michael Loughlin1, Juncal Caubilla-Barron1, Anthony Hilton2, Richard Armstrong2, Craig Smith3, Judith Grant4, Shiu Shoo4 and Stephen Forsythe*1 Address: 1School of Science and Technology, Nottingham Trent University, Clifton Lane, Nottingham, NG11 8NS, UK , 2Life and Health Sciences, Aston University, Aston Triangle, Birmingham, B4 7ET, UK , 3Nottingham City Hospital, Nottingham, NG5 1PB, UK and 4Queens Medical Centre, Nottingham, NG7 2UH, UK Email: Edward Hurrell - [email protected]; Eva Kucerova - [email protected]; Michael Loughlin - [email protected]; Juncal Caubilla-Barron - [email protected]; Anthony Hilton - [email protected]; Richard Armstrong - [email protected]; Craig Smith - [email protected]; Judith Grant - [email protected]; Shiu Shoo - [email protected]; Stephen Forsythe* - [email protected] * Corresponding author Published: 1 September 2009 Received: 9 February 2009 Accepted: 1 September 2009 BMC Infectious Diseases 2009, 9:146 doi:10.1186/1471-2334-9-146 This article is available from: http://www.biomedcentral.com/1471-2334/9/146 © 2009 Hurrell et al; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Abstract Background: The objective of this study was to determine whether neonatal nasogastric enteral feeding tubes are colonised by the opportunistic pathogen Cronobacter spp.
    [Show full text]
  • Caenorhabditis Elegans Responses to Bacteria from Its Natural Habitats
    Caenorhabditis elegans responses to bacteria from PNAS PLUS its natural habitats Buck S. Samuela,1, Holli Roweddera, Christian Braendleb, Marie-Anne Félixc,2, and Gary Ruvkuna,2 aDepartment of Molecular Biology, Massachusetts General Hospital, Boston, MA 02114; bCNRS, INSERM, Institute of Biology Valrose, University of Nice Sophia Antipolis, Parc Valrose, 06108 Nice, France; and cInstitute of Biology of the Ecole Normale Supérieure, CNRS UMR8197, Ecole Normale Supérieure, INSERM U1024, 75005 Paris, France Contributed by Gary Ruvkun, May 11, 2016 (sent for review September 30, 2015; reviewed by Raffi Aroian and Asher D. Cutter) Most Caenorhabditis elegans studies have used laboratory Escherichia bleach treatments of the cultures, which the nematode embryos coli as diet and microbial environment. Here we characterize bacteria are resistant to and survive. The original selection of E. coli as a of C. elegans’ natural habitats of rotting fruits and vegetation to nutritional source for C. elegans was not based on knowledge of the provide greater context for its physiological responses. By the use natural microbes associated with C. elegans in its natural habitat, but of 16S ribosomal DNA (rDNA)-based sequencing, we identified a large on the availability of E. coli in research laboratories and in the variety of bacteria in C. elegans habitats, with phyla Proteobacteria, history of Sydney Brenner, an E. coli bacteriophage geneticist, as he Bacteroidetes, Firmicutes,andActinobacteria being most abundant. developed C. elegans as a model organism (12). Since the effect of From laboratory assays using isolated natural bacteria, C. elegans is diverse pathogenic bacteria has been studied in C. elegans (13–16), able to forage on most bacteria (robust growth on ∼80% of >550 however, little effort has been made to isolate ecologically relevant isolates), although ∼20% also impaired growth and arrested and/or and not necessarily detrimental bacteria.
    [Show full text]
  • Phenotypic and Biotypic Characterization of Klebsiella Oxytoca
    & Bioch ial em b ic ro a c l i T M e f c h o Journal of n l Trivedi et al., J Microb Biochem Technol 2015, 7:4 o a n l o r g u y o DOI: 10.4172/1948-5948.1000205 J ISSN: 1948-5948 Microbial & Biochemical Technology Research Article Article OpenOpen Access Access Phenotypic and Biotypic Characterization of Klebsiella oxytoca: An Impact of Biofield Treatment Mahendra Kumar Trivedi1, Shrikant Patil1, Harish Shettigar1, Khemraj Bairwa2 and Snehasis Jana2* 1Trivedi Global Inc., 10624 S Eastern Avenue Suite A-969, Henderson, NV 89052, USA 2Trivedi Science Research Laboratory Pvt. Ltd., Chinar Fortune City, Bhopal, Madhya Pradesh, India Abstract Klebsiella oxytoca (K. oxytoca) is a Gram-negative microbe generally associated with community and hospital- acquired infections. Due to its clinical significance, we evaluated the effect of biofield treatment on phenotype and biotype characteristics of K. oxytoca (ATCC 43165). The study was performed into three groups i.e. C (control), T1 (treatment, revived); and T2 (treatment, lyophilized). Subsequently, groups T1 and T2 were received biofield treatment and control group was remained as untreated. The antimicrobial sensitivity results showed 3.33% and 6.67% alteration in antimicrobials susceptibility in group T1 cells on day 5 and 10, respectively, and 3.33% alteration in antimicrobials susceptibility was observed in group T2 cells on day 10 as compared to control. The sensitivity patterns of cefazolin were changed from resistant (R) to intermediate (I) on day 5, and resistance (R) to susceptible (S) on day 10, in T1 cells of K. oxytoca.
    [Show full text]