Mutual Exclusivity of MED12/MED12L, MED13/13L, and CDK8/19 Paralogs Revealed Within the CDK-Mediator Kinase Module Danette L
ics om & B te i ro o P in f f o o r l m a Journal of a n t r i Daniels et al., J Proteomics Bioinform 2013, S2 c u s o J DOI: 10.4172/jpb.S2-004 ISSN: 0974-276X Proteomics & Bioinformatics Research Article Article OpenOpen Access Access Mutual Exclusivity of MED12/MED12L, MED13/13L, and CDK8/19 Paralogs Revealed within the CDK-Mediator Kinase Module Danette L. Daniels1*, Michael Ford2*, Marie K. Schwinn1, Hélène Benink1, Matthew D. Galbraith3,4, Ravi Amunugama2, Richard Jones2, David Allen2, Noriko Okazaki5, Hisashi Yamakawa5, Futaba Miki5, Takahiro Nagase5, Joaquín M. Espinosa3,4, and Marjeta Urh1 1Promega Corporation, 2800 Woods Hollow Road, Madison, WI 53711, USA 2MSBioworks LLC, 3950 Varsity Drive, Ann Arbor, MI 48108, USA 3Howard Hughes Medical Institute, USA 4Department of Molecular, Cellular and Developmental Biology, University of Colorado at Boulder, Boulder, Colorado, 80309, USA 5Kazusa DNA Research Institute, Kisarazu 292-0818, Japan Abstract The macromolecular complex Mediator plays important roles in regulation of RNA Polymerase II (RNAPII) activity by DNA-binding proteins, non-coding RNAs, and chromatin. Structural and biochemical studies have shown that human Mediator exists in two forms; a core complex of 26 proteins, termed Mediator, and a larger complex containing the CDK8 kinase module, termed CDK-Mediator. Interestingly, 3 subunits of the kinase module have undergone independent gene duplications in vertebrates to generate the paralog pairs MED12/MED12L, MED13/ MED13L, and CDK8/CDK19. Each has been shown to interact with Mediator, yet clearly defining the composition of CDK kinase module has been challenging due to the large size (~600 kD), the similarities between paralogs, and potential combinatorial nature of complexes.
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