Fungi on Commelina Benghalensis from Brazil, with Notes on Potential for Weed Biological Control
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Generic Hyper-Diversity in Stachybotriaceae
Persoonia 36, 2016: 156–246 www.ingentaconnect.com/content/nhn/pimj RESEARCH ARTICLE http://dx.doi.org/10.3767/003158516X691582 Generic hyper-diversity in Stachybotriaceae L. Lombard1, J. Houbraken1, C. Decock2, R.A. Samson1, M. Meijer1, M. Réblová3, J.Z. Groenewald1, P.W. Crous1,4,5,6 Key words Abstract The family Stachybotriaceae was recently introduced to include the genera Myrothecium, Peethambara and Stachybotrys. Members of this family include important plant and human pathogens, as well as several spe- biodegraders cies used in industrial and commercial applications as biodegraders and biocontrol agents. However, the generic generic concept boundaries in Stachybotriaceae are still poorly defined, as type material and sequence data are not readily avail- human and plant pathogens able for taxonomic studies. To address this issue, we performed multi-locus phylogenetic analyses using partial indoor mycobiota gene sequences of the 28S large subunit (LSU), the internal transcribed spacer regions and intervening 5.8S multi-gene phylogeny nrRNA (ITS), the RNA polymerase II second largest subunit (rpb2), calmodulin (cmdA), translation elongation species concept factor 1-alpha (tef1) and β-tubulin (tub2) for all available type and authentic strains. Supported by morphological taxonomy characters these data resolved 33 genera in the Stachybotriaceae. These included the nine already established genera Albosynnema, Alfaria, Didymostilbe, Myrothecium, Parasarcopodium, Peethambara, Septomyrothecium, Stachybotrys and Xepicula. At the same time the generic names Melanopsamma, Memnoniella and Virgatospora were resurrected. Phylogenetic inference further showed that both the genera Myrothecium and Stachybotrys are polyphyletic resulting in the introduction of 13 new genera with myrothecium-like morphology and eight new genera with stachybotrys-like morphology. -
Axpcoords & Parallel Axparafit: Statistical Co-Phylogenetic Analyses
BMC Bioinformatics BioMed Central Software Open Access AxPcoords & parallel AxParafit: statistical co-phylogenetic analyses on thousands of taxa Alexandros Stamatakis*1,2, Alexander F Auch3, Jan Meier-Kolthoff3 and Markus Göker4 Address: 1École Polytechnique Fédérale de Lausanne, School of Computer & Communication Sciences, Laboratory for Computational Biology and Bioinformatics STATION 14, CH-1015 Lausanne, Switzerland, 2Swiss Institute of Bioinformatics, 3Center for Bioinformatics (ZBIT), Sand 14, Tübingen, University of Tübingen, Germany and 4Organismic Botany/Mycology, Auf der Morgenstelle 1, Tübingen, University of Tübingen, Germany Email: Alexandros Stamatakis* - [email protected]; Alexander F Auch - [email protected]; Jan Meier- Kolthoff - [email protected]; Markus Göker - [email protected] * Corresponding author Published: 22 October 2007 Received: 26 June 2007 Accepted: 22 October 2007 BMC Bioinformatics 2007, 8:405 doi:10.1186/1471-2105-8-405 This article is available from: http://www.biomedcentral.com/1471-2105/8/405 © 2007 Stamatakis et al.; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Abstract Background: Current tools for Co-phylogenetic analyses are not able to cope with the continuous accumulation of phylogenetic data. The sophisticated statistical test for host-parasite co-phylogenetic analyses implemented in Parafit does not allow it to handle large datasets in reasonable times. The Parafit and DistPCoA programs are the by far most compute-intensive components of the Parafit analysis pipeline. -
Stem Necrosis and Leaf Spot Disease Caused by Myrothecium Roridum on Coffee Seedlings in Chikmagalur District of Karnataka
Plant Archives Vol. 19 No. 2, 2019 pp. 4919-4226 e-ISSN:2581-6063 (online), ISSN:0972-5210 STEM NECROSIS AND LEAF SPOT DISEASE CAUSED BY MYROTHECIUM RORIDUM ON COFFEE SEEDLINGS IN CHIKMAGALUR DISTRICT OF KARNATAKA A.P. Ranjini1* and Raja Naika2 1Division of Plant Pathology, Central Coffee Research Institute, Coffee Research Station (P.O.) , Chikkamagaluru District – 577 117 (Karnataka) India. 2Department of Post Graduate Studies and Research in Applied Botany, Kuvempu University, Jnana Sahyadri, Shankaraghatta, Shivamogga District-577 451, Karnataka, India. Abstract The quality of raising seedlings in a perennial crop like coffee may be affected by several abiotic and biotic factors. In India, coffee seedlings are affected by three different diseases in the nursery viz., collar rot, brown eye spot, stem necrosis and leaf spot. The stem necrosis and leaf spot disease caused by the fungus Myrothecium roridum Tode ex Fr. is posing a serious problem in coffee nurseries particularly during rainy period of July and August months. The present study was under taken with a fixed plot survey to assess the distribution, incidence and severity of stem necrosis and leaf spot disease in major coffee growing taluks of Chikmagalur district in the year 2016 and 2017. Out of 22 coffee nurseries surveyed in four major coffee growing taluks of Chikmagalur district, the survey results (pooled data analysis of two years 2016 & 2017) indicated that maximum leaf spot incidence (23.98%) was recorded on Chandragiri cultivar of arabica coffee in Koppa taluk and minimum incidence (16.40%) in Mudigere taluk on C×R cultivar of robusta coffee. Maximum leaf spot severity (30.34%) was recorded on Chandragiri in Chikmagalur taluk and minimum severity (14.87%) in Koppa taluk on C×R. -
First Report of Albifimbria Verrucaria and Deconica Coprophila (Syn: Psylocybe Coprophila) from Field Soil in Korea
The Korean Journal of Mycology www.kjmycology.or.kr RESEARCH ARTICLE First Report of Albifimbria verrucaria and Deconica coprophila (Syn: Psylocybe coprophila) from Field Soil in Korea 1 1 1 1 1 Sun Kumar Gurung , Mahesh Adhikari , Sang Woo Kim , Hyun Goo Lee , Ju Han Jun 1 2 1,* Byeong Heon Gwon , Hyang Burm Lee , and Youn Su Lee 1 Division of Biological Resource Sciences, Kangwon National University, Chuncheon 24341, Korea 2 Divison of Food Technology, Biotechnology and Agrochemistry, College of Agriculture and Life Sciences, Chonnam National University, Gwangju 61186, Korea *Corresponding author: [email protected] ABSTRACT During a survey of fungal diversity in Korea, two fungal strains, KNU17-1 and KNU17-199, were isolated from paddy field soil in Yangpyeong and Sancheong, respectively, in Korea. These fungal isolates were analyzed based on their morphological characteristics and the molecular phylogenetic analysis of the internal transcribed spacer (ITS) rDNA sequences. On the basis of their morphology and phylogeny, KNU17-1 and KNU17-199 isolates were identified as Albifimbria verrucaria and Deconica coprophila, respectively. To the best of our knowledge, A. verrucaria and D. coprophila have not yet been reported in Korea. Thus, this is the first report of these species in Korea. Keywords: Albifimbria verrucaria, Deconica coprophila, Morphology OPEN ACCESS INTRODUCTION pISSN : 0253-651X The genus Albifimbria L. Lombard & Crous 2016 belongs to the family Stachybotryaceae of Ascomycotic eISSN : 2383-5249 fungi. These fungi are characterized by verrucose setae and conidia bearing a funnel-shaped mucoidal Kor. J. Mycol. 2019 September, 47(3): 209-18 https://doi.org/10.4489/KJM.20190025 appendage [1]. -
<I>Thecaphora Capensis</I>
Persoonia 21, 2008: 147–152 www.persoonia.org RESEARCH ARTICLE doi:10.3767/003158508X387462 Thecaphora capensis sp. nov., an unusual new anther smut on Oxalis in South Africa F. Roets 1, L.L. Dreyer 2, M.J. Wingfield 3, D. Begerow 4 Key words Abstract The smut genus Thecaphora contains plant parasitic microfungi that typically infect very specific plant organs. In this study, we describe a new species of Thecaphora from Oxalis lanata var. rosea (Oxalidaceae) in the anther-smut Cape Floristic Region of South Africa. Molecular phylogenetic reconstructions based on large subunit ribosomal Cape Floristic Region DNA sequence data confirmed the generic placement of the fungus and confirmed that it represents an undescribed Oxalis species for which the name T. capensis sp. nov. is provided. The closest known sister species of the new taxon is phylogeny T. oxalidis that infects the fruits of Oxalis spp. in Europe, Asia and the Americas. In contrast, T. capensis produces Thecaphora teliospores within the anthers of its host. This is the first documented case of an anther-smut from an African spe- cies of Oxalis and the first Thecaphora species described from Africa. Article info Received: 24 August 2008; Accepted: 30 October 2008; Published: 10 November 2008. INTRODUCTION The smut genus Thecaphora resides in the Glomosporiaceae (Goldblatt & Manning 2000) and the largest bulbous genus in (Bauer et al. 2001, Vánky et al. 2008) and includes c. 60 de- the region. The CFR Oxalis spp. flower during the wet winter scribed species. Species of Thecaphora produce sori within months (April to August), and escape the drier summer months various plant organs including seeds, flowers, leaves, stems below ground, only to emerge again at the onset of the next and roots. -
The Phylogeny of Plant and Animal Pathogens in the Ascomycota
Physiological and Molecular Plant Pathology (2001) 59, 165±187 doi:10.1006/pmpp.2001.0355, available online at http://www.idealibrary.com on MINI-REVIEW The phylogeny of plant and animal pathogens in the Ascomycota MARY L. BERBEE* Department of Botany, University of British Columbia, 6270 University Blvd, Vancouver, BC V6T 1Z4, Canada (Accepted for publication August 2001) What makes a fungus pathogenic? In this review, phylogenetic inference is used to speculate on the evolution of plant and animal pathogens in the fungal Phylum Ascomycota. A phylogeny is presented using 297 18S ribosomal DNA sequences from GenBank and it is shown that most known plant pathogens are concentrated in four classes in the Ascomycota. Animal pathogens are also concentrated, but in two ascomycete classes that contain few, if any, plant pathogens. Rather than appearing as a constant character of a class, the ability to cause disease in plants and animals was gained and lost repeatedly. The genes that code for some traits involved in pathogenicity or virulence have been cloned and characterized, and so the evolutionary relationships of a few of the genes for enzymes and toxins known to play roles in diseases were explored. In general, these genes are too narrowly distributed and too recent in origin to explain the broad patterns of origin of pathogens. Co-evolution could potentially be part of an explanation for phylogenetic patterns of pathogenesis. Robust phylogenies not only of the fungi, but also of host plants and animals are becoming available, allowing for critical analysis of the nature of co-evolutionary warfare. Host animals, particularly human hosts have had little obvious eect on fungal evolution and most cases of fungal disease in humans appear to represent an evolutionary dead end for the fungus. -
<I>Ustilago-Sporisorium-Macalpinomyces</I>
Persoonia 29, 2012: 55–62 www.ingentaconnect.com/content/nhn/pimj REVIEW ARTICLE http://dx.doi.org/10.3767/003158512X660283 A review of the Ustilago-Sporisorium-Macalpinomyces complex A.R. McTaggart1,2,3,5, R.G. Shivas1,2, A.D.W. Geering1,2,5, K. Vánky4, T. Scharaschkin1,3 Key words Abstract The fungal genera Ustilago, Sporisorium and Macalpinomyces represent an unresolved complex. Taxa within the complex often possess characters that occur in more than one genus, creating uncertainty for species smut fungi placement. Previous studies have indicated that the genera cannot be separated based on morphology alone. systematics Here we chronologically review the history of the Ustilago-Sporisorium-Macalpinomyces complex, argue for its Ustilaginaceae resolution and suggest methods to accomplish a stable taxonomy. A combined molecular and morphological ap- proach is required to identify synapomorphic characters that underpin a new classification. Ustilago, Sporisorium and Macalpinomyces require explicit re-description and new genera, based on monophyletic groups, are needed to accommodate taxa that no longer fit the emended descriptions. A resolved classification will end the taxonomic confusion that surrounds generic placement of these smut fungi. Article info Received: 18 May 2012; Accepted: 3 October 2012; Published: 27 November 2012. INTRODUCTION TAXONOMIC HISTORY Three genera of smut fungi (Ustilaginomycotina), Ustilago, Ustilago Spo ri sorium and Macalpinomyces, contain about 540 described Ustilago, derived from the Latin ustilare (to burn), was named species (Vánky 2011b). These three genera belong to the by Persoon (1801) for the blackened appearance of the inflores- family Ustilaginaceae, which mostly infect grasses (Begerow cence in infected plants, as seen in the type species U. -
Myrothecium-Like New Species from Turfgrasses And Associated
A peer-reviewed open-access journal MycoKeys 51: 29–53Myrothecium-like (2019) new species from turfgrasses and associated rhizosphere 29 doi: 10.3897/mycokeys.51.31957 RESEARCH ARTICLE MycoKeys http://mycokeys.pensoft.net Launched to accelerate biodiversity research Myrothecium-like new species from turfgrasses and associated rhizosphere Junmin Liang1,*, Guangshuo Li1,2,*, Shiyue Zhou3, Meiqi Zhao4,5, Lei Cai1,3 1 State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beichen West Road, Chaoyang District, Beijing 100101, China 2 College of Life Sciences, Hebei University, Baoding, Hebei Pro- vince, 071002, China 3 College of Life Sciences, University of Chinese Academy of Sciences, Beijing 100049, China 4 College of Plant Protection, China Agricultural University, Beijing 100193, China 5 Forwardgroup Turf Service & Research Center, Wanning, Hainan Province, 571500, China Corresponding author: Lei Cai ([email protected]) Academic editor: I. Schmitt | Received 27 November 2018 | Accepted 26 February 2019 | Published 18 April 2019 Citation: Liang J, Li G, Zhou S, Zhao M, Cai L (2019) Myrothecium-like new species from turfgrasses and associated rhizosphere. MycoKeys 51: 29–53. https://doi.org/10.3897/mycokeys.51.31957 Abstract Myrothecium sensu lato includes a group of fungal saprophytes and weak pathogens with a worldwide distribution. Myrothecium s.l. includes 18 genera, such as Myrothecium, Septomyrothecium, Myxospora, all currently included in the family Stachybotryaceae. In this study, we identified 84 myrothecium-like strains isolated from turfgrasses and their rhizosphere. Five new species, i.e., Alfaria poae, Alf. humicola, Dimorphiseta acuta, D. obtusa, and Paramyrothecium sinense, are described based on their morphological and phylogenetic distinctions. -
Fungal Allergy and Pathogenicity 20130415 112934.Pdf
Fungal Allergy and Pathogenicity Chemical Immunology Vol. 81 Series Editors Luciano Adorini, Milan Ken-ichi Arai, Tokyo Claudia Berek, Berlin Anne-Marie Schmitt-Verhulst, Marseille Basel · Freiburg · Paris · London · New York · New Delhi · Bangkok · Singapore · Tokyo · Sydney Fungal Allergy and Pathogenicity Volume Editors Michael Breitenbach, Salzburg Reto Crameri, Davos Samuel B. Lehrer, New Orleans, La. 48 figures, 11 in color and 22 tables, 2002 Basel · Freiburg · Paris · London · New York · New Delhi · Bangkok · Singapore · Tokyo · Sydney Chemical Immunology Formerly published as ‘Progress in Allergy’ (Founded 1939) Edited by Paul Kallos 1939–1988, Byron H. Waksman 1962–2002 Michael Breitenbach Professor, Department of Genetics and General Biology, University of Salzburg, Salzburg Reto Crameri Professor, Swiss Institute of Allergy and Asthma Research (SIAF), Davos Samuel B. Lehrer Professor, Clinical Immunology and Allergy, Tulane University School of Medicine, New Orleans, LA Bibliographic Indices. This publication is listed in bibliographic services, including Current Contents® and Index Medicus. Drug Dosage. The authors and the publisher have exerted every effort to ensure that drug selection and dosage set forth in this text are in accord with current recommendations and practice at the time of publication. However, in view of ongoing research, changes in government regulations, and the constant flow of information relating to drug therapy and drug reactions, the reader is urged to check the package insert for each drug for any change in indications and dosage and for added warnings and precautions. This is particularly important when the recommended agent is a new and/or infrequently employed drug. All rights reserved. No part of this publication may be translated into other languages, reproduced or utilized in any form or by any means electronic or mechanical, including photocopying, recording, microcopy- ing, or by any information storage and retrieval system, without permission in writing from the publisher. -
A Survey of Ballistosporic Phylloplane Yeasts in Baton Rouge, Louisiana
Louisiana State University LSU Digital Commons LSU Master's Theses Graduate School 2012 A survey of ballistosporic phylloplane yeasts in Baton Rouge, Louisiana Sebastian Albu Louisiana State University and Agricultural and Mechanical College, [email protected] Follow this and additional works at: https://digitalcommons.lsu.edu/gradschool_theses Part of the Plant Sciences Commons Recommended Citation Albu, Sebastian, "A survey of ballistosporic phylloplane yeasts in Baton Rouge, Louisiana" (2012). LSU Master's Theses. 3017. https://digitalcommons.lsu.edu/gradschool_theses/3017 This Thesis is brought to you for free and open access by the Graduate School at LSU Digital Commons. It has been accepted for inclusion in LSU Master's Theses by an authorized graduate school editor of LSU Digital Commons. For more information, please contact [email protected]. A SURVEY OF BALLISTOSPORIC PHYLLOPLANE YEASTS IN BATON ROUGE, LOUISIANA A Thesis Submitted to the Graduate Faculty of the Louisiana Sate University and Agricultural and Mechanical College in partial fulfillment of the requirements for the degree of Master of Science in The Department of Plant Pathology by Sebastian Albu B.A., University of Pittsburgh, 2001 B.S., Metropolitan University of Denver, 2005 December 2012 Acknowledgments It would not have been possible to write this thesis without the guidance and support of many people. I would like to thank my major professor Dr. M. Catherine Aime for her incredible generosity and for imparting to me some of her vast knowledge and expertise of mycology and phylogenetics. Her unflagging dedication to the field has been an inspiration and continues to motivate me to do my best work. -
Mycosphere Essays 2. Myrothecium
Mycosphere 7 (1): 64–80 (2016) www.mycosphere.org ISSN 2077 7019 Article Doi 10.5943/mycosphere/7/1/7 Copyright © Guizhou Academy of Agricultural Sciences Mycosphere Essays 2. Myrothecium Chen Y1, Ran SF1, Dai DQ2, Wang Y1, Hyde KD2, Wu YM3 and Jiang YL1 1 Department of Plant Pathology, Agricultural College of Guizhou University, Huaxi District, Guiyang City, Guizhou Province 550025, China 2 Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand 3 Department of Plant Pathology, Shandong Agricultural University, Taian, 271018, China Chen Y, Ran SF, Dai DQ, Wang Y, Hyde KD, Wu YM, Jiang YL 2016 – Mycosphere Essays 2. Myrothecium. Mycosphere 7(1), 64–80, Doi 10.5943/mycosphere/7/1/7 Abstract Myrothecium (family Stachybotryaceae) has a worldwide distribution. Species in this genus were previously classified based on the morphology of the asexual morph, especially characters of conidia and conidiophores. Morphology-based identification alone is imprecise as there are few characters to differentiate species within the genus and, therefore, molecular sequence data is important in identifying species. In this review we discuss the history and significance of the genus, illustrate the morphology and discuss its role as a plant pathogen and biological control agent. We illustrate the type species Myrothecium inundatum with a line diagram and M. uttaradiensis with photo plates and discuss species numbers in the genus. The genus is re-evaluated based on molecular analyses of ITS and EF1-α sequence data, as well as a combined ATP6, EF1-α, LSU, RPB1 and SSU dataset. The combined gene analysis proved more suitable for resolving the taxonomic placement of this genus. -
1. Padil Species Factsheet Scientific Name: Common Name Image
1. PaDIL Species Factsheet Scientific Name: Bauerago vuyckii (Oudem. & Beij.) Vánky Basidiomycota, Microbotryomycetes, Microbotryales, Ustilentylomataceae Common Name Luzula Smut Live link: http://www.padil.gov.au/aus-smuts/Pest/Main/139905 Image Library Smut Fungi of Australia Live link: http://www.padil.gov.au/aus-smuts/ Partners for Smut Fungi of Australia image library Queensland Government https://www.daf.qld.gov.au/ 2. Species Information 2.1. Details Specimen Contact: Roger Shivas - [email protected] Author: Roger Shivas Citation: Roger Shivas (2010) Luzula Smut(Bauerago vuyckii)Updated on 2/24/2012 Available online: PaDIL - http://www.padil.gov.au Image Use: Free for use under the Creative Commons Attribution-NonCommercial 4.0 International (CC BY- NC 4.0) 2.2. URL Live link: http://www.padil.gov.au/aus-smuts/Pest/Main/139905 2.3. Facets Columella: absent Distribution: VIC Peridium: absent Sorus position: inflorescence Sorus shape: globose to short cylindrical, irregular (includes naked sori) Spore balls: absent Spore mass texture: powdery Spore shape: globose or subglobose, ovoid to ellipsoidal Spore surface ornamentation: reticulate Status: Native Australian Species Sterile cells: absent Host Family: Cyperaceae 2.4. Other Names Cintractia vuyckii (Oudem. & Beij.) Cif. Ustilago vuyckii Oudem. & Beij. 2.5. Diagnostic Notes **Sori** in ovaries filling the capsules with an dusty ochraceous yellow spore mass. Infection systemic; infected plants may be slightly deformed. **Spores** globose to ellipsoidal, 16–21 × 13–20 µm, pale yellow to pale yellowish brown; wall 2.0–3.5 µm thick, deeply reticulate, 5–8 meshes per spore diameter; meshes 2–3 µm wide; muri 1.5–2.5 (–3) µm high, acute or subacute in optical median view.