Isolation and Screening of Streptomyces Species for Enhanced Amylase Production
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Isolation and Identification of a Rare Actinomycete with Antibacterial Activity from Saline Regions of Iran
Original Article A Rare Actinomycete with Antibacterial Activity 2016, Vol: 4, Issue: 3, Pages: 10-16 Research in Molecular Medicine DOI: 10.18869/acadpub.rmm.4.3.10 Isolation and Identification of a Rare Actinomycete with Antibacterial Activity from Saline Regions of Iran Samaneh Mashhadi 2, Mahdi Moshtaghi Nikou 3, Mohammad Ali Amoozegar 4, Abolghasem Danesh 1* 1 Biotechnology Research Center, Mashhad University of Medical Sciences, Mashhad, Iran. 2 School of Pharmacy, Mashhad University of Medical Sciences, Mashhad, Iran. 3 Microorganisms Bank, Iranian Biological Resource Centre (IBRC), ACECR, Tehran, Iran. 4 Extremophiles Laboratory, Department of Microbiology, Faculty of Biology and Center of Excellence in Phylogeny of Living Organisms, College of Science, University of Tehran, Tehran, Iran. Received: 26 Mar 2016 Abstract Revised : 1 May 2016 Background: The appearance of multi-drug resistant microorganisms is becoming a global problem. Already several strategies have been employed to overcome Accepted: 15 May 2016 antibiotic resistance issue. Developing new antimicrobial compounds from microbial sources could be a beneficial solution. Hence screening programs in Corresponding Author: Abolghasem Danesh order to discover new antibiotics from microbial entities are interesting. Because Biotechnology Research Center, of high capabilities of extremophiles for adaptation to harsh environmental Mashhad University of Medical conditions, the microbial communities of the extreme environments could be Sciences, Mashhad, Iran. regarded as rich resources for new antibacterial metabolites. Phone: +985138823251 E-mail: [email protected] Materials and Methods: In this research different saline environments of Iran have been subjected to screening of antibiotic producing actinomycetes using overlaid method after the ingredient optimization of culture media. -
Alloactinosynnema Sp
University of New Mexico UNM Digital Repository Chemistry ETDs Electronic Theses and Dissertations Summer 7-11-2017 AN INTEGRATED BIOINFORMATIC/ EXPERIMENTAL APPROACH FOR DISCOVERING NOVEL TYPE II POLYKETIDES ENCODED IN ACTINOBACTERIAL GENOMES Wubin Gao University of New Mexico Follow this and additional works at: https://digitalrepository.unm.edu/chem_etds Part of the Bioinformatics Commons, Chemistry Commons, and the Other Microbiology Commons Recommended Citation Gao, Wubin. "AN INTEGRATED BIOINFORMATIC/EXPERIMENTAL APPROACH FOR DISCOVERING NOVEL TYPE II POLYKETIDES ENCODED IN ACTINOBACTERIAL GENOMES." (2017). https://digitalrepository.unm.edu/chem_etds/73 This Dissertation is brought to you for free and open access by the Electronic Theses and Dissertations at UNM Digital Repository. It has been accepted for inclusion in Chemistry ETDs by an authorized administrator of UNM Digital Repository. For more information, please contact [email protected]. Wubin Gao Candidate Chemistry and Chemical Biology Department This dissertation is approved, and it is acceptable in quality and form for publication: Approved by the Dissertation Committee: Jeremy S. Edwards, Chairperson Charles E. Melançon III, Advisor Lina Cui Changjian (Jim) Feng i AN INTEGRATED BIOINFORMATIC/EXPERIMENTAL APPROACH FOR DISCOVERING NOVEL TYPE II POLYKETIDES ENCODED IN ACTINOBACTERIAL GENOMES by WUBIN GAO B.S., Bioengineering, China University of Mining and Technology, Beijing, 2012 DISSERTATION Submitted in Partial Fulfillment of the Requirements for the Degree of Doctor of Philosophy Chemistry The University of New Mexico Albuquerque, New Mexico July 2017 ii DEDICATION This dissertation is dedicated to my altruistic parents, Wannian Gao and Saifeng Li, who never stopped encouraging me to learn more and always supported my decisions on study and life. -
Genomic and Phylogenomic Insights Into the Family Streptomycetaceae Lead to Proposal of Charcoactinosporaceae Fam. Nov. and 8 No
bioRxiv preprint doi: https://doi.org/10.1101/2020.07.08.193797; this version posted July 8, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Genomic and phylogenomic insights into the family Streptomycetaceae 2 lead to proposal of Charcoactinosporaceae fam. nov. and 8 novel genera 3 with emended descriptions of Streptomyces calvus 4 Munusamy Madhaiyan1, †, * Venkatakrishnan Sivaraj Saravanan2, † Wah-Seng See-Too3, † 5 1Temasek Life Sciences Laboratory, 1 Research Link, National University of Singapore, 6 Singapore 117604; 2Department of Microbiology, Indira Gandhi College of Arts and Science, 7 Kathirkamam 605009, Pondicherry, India; 3Division of Genetics and Molecular Biology, 8 Institute of Biological Sciences, Faculty of Science, University of Malaya, Kuala Lumpur, 9 Malaysia 10 *Corresponding author: Temasek Life Sciences Laboratory, 1 Research Link, National 11 University of Singapore, Singapore 117604; E-mail: [email protected] 12 †All these authors have contributed equally to this work 13 Abstract 14 Streptomycetaceae is one of the oldest families within phylum Actinobacteria and it is large and 15 diverse in terms of number of described taxa. The members of the family are known for their 16 ability to produce medically important secondary metabolites and antibiotics. In this study, 17 strains showing low 16S rRNA gene similarity (<97.3 %) with other members of 18 Streptomycetaceae were identified and subjected to phylogenomic analysis using 33 orthologous 19 gene clusters (OGC) for accurate taxonomic reassignment resulted in identification of eight 20 distinct and deeply branching clades, further average amino acid identity (AAI) analysis showed 1 bioRxiv preprint doi: https://doi.org/10.1101/2020.07.08.193797; this version posted July 8, 2020. -
Genome Mining Coupled with OSMAC-Based Cultivation Reveal Differential Production of Surugamide a by the Marine Sponge Isolate Streptomyces Sp
microorganisms Article Genome Mining Coupled with OSMAC-Based Cultivation Reveal Differential Production of Surugamide A by the Marine Sponge Isolate Streptomyces sp. SM17 When Compared to Its Terrestrial Relative S. albidoflavus J1074 Eduardo L. Almeida 1 , Navdeep Kaur 2, Laurence K. Jennings 2 , Andrés Felipe Carrillo Rincón 1, Stephen A. Jackson 1,3 , Olivier P. Thomas 2 and Alan D.W. Dobson 1,3,* 1 School of Microbiology, University College Cork, T12 YN60 Cork, Ireland; [email protected] (E.L.A.); [email protected] (A.F.C.R.); [email protected] (S.A.J.) 2 Marine Biodiscovery, School of Chemistry and Ryan Institute, National University of Ireland Galway (NUI Galway), University Road, H91 TK33 Galway, Ireland; [email protected] (N.K.); [email protected] (L.K.J.); [email protected] (O.P.T.) 3 Environmental Research Institute, University College Cork, T23 XE10 Cork, Ireland * Correspondence: [email protected] Received: 12 August 2019; Accepted: 24 September 2019; Published: 26 September 2019 Abstract: Much recent interest has arisen in investigating Streptomyces isolates derived from the marine environment in the search for new bioactive compounds, particularly those found in association with marine invertebrates, such as sponges. Among these new compounds recently identified from marine Streptomyces isolates are the octapeptidic surugamides, which have been shown to possess anticancer and antifungal activities. By employing genome mining followed by an one strain many compounds (OSMAC)-based approach, we have identified the previously unreported capability of a marine sponge-derived isolate, namely Streptomyces sp. SM17, to produce surugamide A. -
Streptomyces Monashensis Sp. Nov., a Novel Mangrove Soil
www.nature.com/scientificreports Corrected: Author Correction OPEN Streptomyces monashensis sp. nov., a novel mangrove soil actinobacterium from East Received: 13 September 2018 Accepted: 21 January 2019 Malaysia with antioxidative Published online: 28 February 2019 potential Jodi Woan-Fei Law1, Hooi-Leng Ser1,2,3, Nurul-Syakima Ab Mutalib 4, Surasak Saokaew 1,5,6, Acharaporn Duangjai1,5,7, Tahir Mehmood Khan2,8, Kok-Gan Chan 9,10, Bey-Hing Goh2,3,5 & Learn-Han Lee1,3,5 A new Streptomyces species discovered from Sarawak mangrove soil is described, with the proposed name – Streptomyces monashensis sp. nov. (strain MUSC 1JT). Taxonomy status of MUSC 1JT was determined via polyphasic approach. Phylogenetic and chemotaxonomic properties of strain MUSC 1JT were in accordance with those known for genus Streptomyces. Based on phylogenetic analyses, the strains closely related to MUSC 1JT were Streptomyces corchorusii DSM 40340T (98.7%), Streptomyces olivaceoviridis NBRC 13066T (98.7%), Streptomyces canarius NBRC 13431T (98.6%) and Streptomyces coacervatus AS-0823T (98.4%). Outcomes of DNA–DNA relatedness between strain MUSC 1JT and its closely related type strains covered from 19.7 ± 2.8% to 49.1 ± 4.3%. Strain MUSC 1JT has genome size of 10,254,857 bp with DNA G + C content of 71 mol%. MUSC 1JT extract exhibited strong antioxidative activity up to 83.80 ± 4.80% in the SOD assay, with signifcant cytotoxic efect against colon cancer cell lines HCT-116 and SW480. Streptomyces monashensis MUSC 1JT (=DSM 103626T = MCCC 1K03219T) could potentially be a producer of novel bioactive metabolites; hence discovery of this new species may be highly signifcant to the biopharmaceutical industry as it could lead to development of new and useful chemo-preventive drugs. -
Bioinformatic Analysis of Streptomyces to Enable Improved Drug Discovery
University of New Hampshire University of New Hampshire Scholars' Repository Master's Theses and Capstones Student Scholarship Spring 2019 BIOINFORMATIC ANALYSIS OF STREPTOMYCES TO ENABLE IMPROVED DRUG DISCOVERY Kaitlyn Christina Belknap University of New Hampshire, Durham Follow this and additional works at: https://scholars.unh.edu/thesis Recommended Citation Belknap, Kaitlyn Christina, "BIOINFORMATIC ANALYSIS OF STREPTOMYCES TO ENABLE IMPROVED DRUG DISCOVERY" (2019). Master's Theses and Capstones. 1268. https://scholars.unh.edu/thesis/1268 This Thesis is brought to you for free and open access by the Student Scholarship at University of New Hampshire Scholars' Repository. It has been accepted for inclusion in Master's Theses and Capstones by an authorized administrator of University of New Hampshire Scholars' Repository. For more information, please contact [email protected]. BIOINFORMATIC ANALYSIS OF STREPTOMYCES TO ENABLE IMPROVED DRUG DISCOVERY BY KAITLYN C. BELKNAP B.S Medical Microbiology, University of New Hampshire, 2017 THESIS Submitted to the University of New Hampshire in Partial Fulfillment of the Requirements for the Degree of Master of Science in Genetics May, 2019 ii BIOINFORMATIC ANALYSIS OF STREPTOMYCES TO ENABLE IMPROVED DRUG DISCOVERY BY KAITLYN BELKNAP This thesis was examined and approved in partial fulfillment of the requirements for the degree of Master of Science in Genetics by: Thesis Director, Brian Barth, Assistant Professor of Pharmacology Co-Thesis Director, Cheryl Andam, Assistant Professor of Microbial Ecology Krisztina Varga, Assistant Professor of Biochemistry Colin McGill, Associate Professor of Chemistry (University of Alaska Anchorage) On February 8th, 2019 Approval signatures are on file with the University of New Hampshire Graduate School. -
INVESTIGATING the ACTINOMYCETE DIVERSITY INSIDE the HINDGUT of an INDIGENOUS TERMITE, Microhodotermes Viator
INVESTIGATING THE ACTINOMYCETE DIVERSITY INSIDE THE HINDGUT OF AN INDIGENOUS TERMITE, Microhodotermes viator by Jeffrey Rohland Thesis presented for the degree of Doctor of Philosophy in the Department of Molecular and Cell Biology, Faculty of Science, University of Cape Town, South Africa. April 2010 ACKNOWLEDGEMENTS Firstly and most importantly, I would like to thank my supervisor, Dr Paul Meyers. I have been in his lab since my Honours year, and he has always been a constant source of guidance, help and encouragement during all my years at UCT. His serious discussion of project related matters and also his lighter side and sense of humour have made the work that I have done a growing and learning experience, but also one that has been really enjoyable. I look up to him as a role model and mentor and acknowledge his contribution to making me the best possible researcher that I can be. Thank-you to all the members of Lab 202, past and present (especially to Gareth Everest – who was with me from the start), for all their help and advice and for making the lab a home away from home and generally a great place to work. I would also like to thank Di James and Bruna Galvão for all their help with the vast quantities of sequencing done during this project, and Dr Bronwyn Kirby for her help with the statistical analyses. Also, I must acknowledge Miranda Waldron and Mohammed Jaffer of the Electron Microsope Unit at the University of Cape Town for their help with scanning electron microscopy and transmission electron microscopy related matters, respectively. -
Antibiotics Targets, Mechanisms and Resistance 1St
Edited by Claudio O. Gualerzi, Letizia Brandi, Attilio Fabbretti, and Cynthia L. Pon Antibiotics Related Titles Phoenix, D.A., Dennison, S., and Harris, F. Arya, D.P. (ed.) Antimicrobial Peptides Aminoglycoside Antibiotics From Chemical Biologyto Drug Discovery 2013 Print ISBN: 978-3-527-33263-2, also available in 2007 electronic formats Print ISBN: 978-0-471-74302-6, also available in electronic formats Skold,¨ O. Antibiotics and Antibiotic Tolmasky, M. and Bonomo, R. (eds.) Resistance Enzyme-Mediated Resistance to Antibiotics 2011 Print ISBN: 978-0-470-43850-3, also available in 2007 electronic formats Print ISBN: 978-1-555-81303-1 Selzer, P.M. (ed.) Antiparasitic and Antibacterial Drug Discovery From Molecular Targets to Drug Candidates 2009 Print ISBN: 978-3-527-32327-2, also available in electronic formats Edited by Claudio O. Gualerzi, Letizia Brandi, Attilio Fabbretti, and Cynthia L. Pon Antibiotics Targets, Mechanisms and Resistance The Editors All books published by Wiley-VCH are carefully produced. Nevertheless, authors, editors, and publisher do not warrant the Claudio O. Gualerzi information contained in these books, Laboratory of Genetics including this book, to be free of errors. Department of Biosciences and Readers are advised to keep in mind that Biotechnology statements, data, illustrations, procedural University of Camerino details or other items may inadvertently be 62032 Camerino inaccurate. Italy Letizia Brandi Library of Congress Card No.: applied for Laboratory of Genetics Department of Biosciences and British Library Cataloguing-in-Publication Biotechnology Data University of Camerino A catalogue record for this book is available 62032 Camerino from the British Library. Italy Bibliographic information published by the Attilio Fabbretti Deutsche Nationalbibliothek Laboratory of Genetics The Deutsche Nationalbibliothek Department of Biosciences and lists this publication in the Deutsche Biotechnology Nationalbibliografie; detailed bibliographic University of Camerino data are available on the Internet at 62032 Camerino <http://dnb.d-nb.de>. -
Capítulo 1 Antibióticos Y Nuevas Terapias Para Combatir Las Enfermedades Infecciosas Chapter 1 Antibiotics and New Therapies T
1 Capítulo 1 Antibióticos y nuevas terapias para combatir las enfermedades infecciosas Chapter 1 Antibiotics and new therapies to face the infectious diseases GARCÍA-REYES, Melito†1, CASTRO-ESCARPULLI, Graciela2, HERNÁNDEZ-RODRÍGUEZ, Cesar Hugo2, VILLA-GARCÍA, Matilde1 y MERCADO-FLORES, Yuridia*1 1Universidad Politécnica de Pachuca. México. 2Escuela Nacional de Ciencias Biológicas. IPN. México. ID 1er Autor: Melito, García-Reyes / ORC ID: 0000-0001-9779-9581, CVU CONACYT ID: 858294 ID 1er Coautor: Graciela, Castro-Escarpulli / ORC ID: 0000-0002-7496-8247, CVU CONACYT ID: 120960 ID 2do Coautor: Cesar Hugo, Hernández-Rodríguez / ORC ID: 0000-0003-2411-9789, CVU CONACYT ID: 9705 ID 3er Coautor: Matilde, Villa-García / ORC ID: 0000-0002-1115-6612, CVU CONACYT ID: 234139 ID 4to Coautor: Yuridia, Mercado-Flores / ORC ID: 0000-0003-3278-2783, CVU CONACYT ID: 122168 M. García, G. Castro, C. Hernández, M. Villa, y Y. Mercado *[email protected] E. Mártinez. AA.). Medicina y Ciencias de la Salud TI. Collection-©ECORFAN-Mexico, CDMX, 2019 2 Abstract Antibiotics have been our greatest weapons against infectious diseases; their use has represented the lives of millions of people throughout the history. However, the exposure of pathogenic bacteria to antimicrobial agents without proper regulation, coupled with the normal course of evolution, has led to bacteria, gram-negative mainly, the developing complex mechanisms to resist or evade the action of antibiotics. However, the search for new drugs against pathogens has not worked in the last fifty years, and on the other hand, the rise of new super bacteria makes infections difficult to treat and the multiresistance is expanding every time by the world. -
Actinomycetes: a Never-Ending Source of Bioactive Compounds—An Overview on Antibiotics Production
antibiotics Review Actinomycetes: A Never-Ending Source of Bioactive Compounds—An Overview on Antibiotics Production Davide De Simeis and Stefano Serra * Consiglio Nazionale delle Ricerche (C.N.R.), Istituto di Scienze e Tecnologie Chimiche, Via Mancinelli 7, 20131 Milano, Italy; [email protected] * Correspondence: [email protected] or [email protected]; Tel.: +39-02-2399-3076 Abstract: The discovery of penicillin by Sir Alexander Fleming in 1928 provided us with access to a new class of compounds useful at fighting bacterial infections: antibiotics. Ever since, a number of studies were carried out to find new molecules with the same activity. Microorganisms belonging to Actinobacteria phylum, the Actinomycetes, were the most important sources of antibiotics. Bioactive compounds isolated from this order were also an important inspiration reservoir for pharmaceutical chemists who realized the synthesis of new molecules with antibiotic activity. According to the World Health Organization (WHO), antibiotic resistance is currently one of the biggest threats to global health, food security, and development. The world urgently needs to adopt measures to reduce this risk by finding new antibiotics and changing the way they are used. In this review, we describe the primary role of Actinomycetes in the history of antibiotics. Antibiotics produced by these microorganisms, their bioactivities, and how their chemical structures have inspired generations of scientists working in the synthesis of new drugs are described thoroughly. Keywords: antibiotics; Actinomycetes; antibiotic resistance; natural products; chemical tailoring; chemical synthesis Citation: De Simeis, D.; Serra, S. Actinomycetes: A Never-Ending Source of Bioactive Compounds—An Overview on Antibiotics Production. 1. -
And Intracellular Colonization of Arabidopsis Roots by Endophytic Actinobacteria And
bioRxiv preprint doi: https://doi.org/10.1101/222844; this version posted November 21, 2017. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Inter- and intracellular colonization of Arabidopsis roots by endophytic actinobacteria and 2 the impact of plant hormones on their antimicrobial activity 3 4 Anne van der Meij1, *, Joost Willemse1,*, Martinus A. Schneijderberg2, René Geurts2, Jos M. 5 Raaijmakers3 and Gilles P. van Wezel1, # 6 7 1 Molecular Biotechnology, Institute of Biology, Leiden University, Sylviusweg 72, 2333 BE, 8 Leiden, The Netherlands. 9 2 Department of Plant Sciences, Wageningen University, The Netherlands. 10 3 Department of Microbial Ecology, Netherlands Institute of Ecology (NIOO-KNAW), 11 Wageningen, The Netherlands. 12 13 * these authors contributed equally to this work. 14 # Author for correspondence: tel. +31 71 5274310; email: [email protected]. 15 16 17 Keywords: Streptomyces; plant-microbe interactions; plant hormone; eliciting cryptic 18 antibiotics; electron microscopy. 19 20 21 1 bioRxiv preprint doi: https://doi.org/10.1101/222844; this version posted November 21, 2017. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 22 ABSTRACT 23 Many actinobacteria live in close association with eukaryotes like fungi, insects, animals and 24 plants. -
IJMICRO.2020.8816111.Pdf
University of Calgary PRISM: University of Calgary's Digital Repository Libraries & Cultural Resources Open Access Publications 2020-11-24 Molecular-Based Identification of Actinomycetes Species That Synthesize Antibacterial Silver Nanoparticles Bizuye, Abebe; Gedamu, Lashitew; Bii, Christine; Gatebe, Erastus; Maina, Naomi Abebe Bizuye, Lashitew Gedamu, Christine Bii, Erastus Gatebe, and Naomi Maina, “Molecular-Based Identification of Actinomycetes Species That Synthesize Antibacterial Silver Nanoparticles,” International Journal of Microbiology, vol. 2020, Article ID 8816111, 17 pages, 2020. doi:10.1155/2020/8816111 http://dx.doi.org/10.1155/2020/8816111 Journal Article Downloaded from PRISM: https://prism.ucalgary.ca Research Article Molecular-Based Identification of Actinomycetes Species That Synthesize Antibacterial Silver Nanoparticles Abebe Bizuye ,1,2 Lashitew Gedamu,3 Christine Bii,4 Erastus Gatebe,5 and Naomi Maina 2,6 1Department of Medical Laboratory, College of Medicine and Health Sciences, Bahir Dar University, Bahir Dar, Ethiopia 2Molecular Biology and Biotechnology, Pan African University Institute of Basic Sciences, Innovation and Technology, Jomo Kenyatta University of Agriculture and Technology, Nairobi, Kenya 3Department of Biological Sciences, University of Calgary, Calgary, Canada 4Centre for Microbiology Research, Kenya Medical Research Institute, Nairobi, Kenya 5Kenya Industrial Research Development and Innovation, Nairobi, Kenya 6Department of Biochemistry, College of Health Sciences, Jomo Kenyatta University of Agriculture and Technology, Nairobi, Kenya Correspondence should be addressed to Abebe Bizuye; [email protected] Received 18 August 2020; Revised 17 October 2020; Accepted 16 November 2020; Published 24 November 2020 Academic Editor: Diriba Muleta Copyright © 2020 Abebe Bizuye et al. +is is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.