Recent Advances in Metal-Free Quinoline Synthesis

Total Page:16

File Type:pdf, Size:1020Kb

Recent Advances in Metal-Free Quinoline Synthesis molecules Review Recent Advances in Metal-Free Quinoline Synthesis Ginelle A. Ramann and Bryan J. Cowen * Department of Chemistry and Biochemistry, University of Denver, Denver, CO 80208, USA; [email protected] * Correspondence: [email protected]; Tel.: +1-303-871-2981; Fax: +1-303-871-2254 Academic Editor: Wim Dehaen Received: 27 June 2016; Accepted: 22 July 2016; Published: 29 July 2016 Abstract: The quinoline ring system is one of the most ubiquitous heterocycles in the fields of medicinal and industrial chemistry, forming the scaffold for compounds of great significance. These include anti-inflammatory and antitumor agents, the antimalarial drugs quinine and chloroquine, and organic light-emitting diodes. Quinolines were first synthesized in 1879, and since then a multitude of synthetic routes have been developed. Many of these methods, such as the Skraup, Doebner–Von Miller, and Friedlander quinoline syntheses, are well-known but suffer from inefficiency, harsh reaction conditions, and toxic reagents. This review focuses on recent transition metal-free processes toward these important heterocycles, including both novel routes and modifications to established methods. For example, variations on the Skraup method include microwave irradiation, ionic liquid media, and novel annulation partners, all of which have shown increased reaction efficiency and improved yield of the heteroring-unsubstituted quinoline products. Similarly, modifications to other synthetic routes have been implemented, with the quinoline products displaying a wide variety of substitution patterns. Keywords: quinoline; heterocycle; metal-free 1. Introduction Quinoline was discovered by Runge in 1834 as one of the many components extracted from coal tar [1]. While this nitrogen-based heterocycle is not overly useful in and of itself, it is easily modified with simple to complex functionalities, giving a multitude of compounds that are ubiquitous in the fields of medicinal and industrial chemistry. Prominently, the first and most widely used antimalarial agent, quinine (I, Figure1), contains the quinoline scaffold, as do the closely related derivatives chloroquine (II) and mefloquine (III)[2]. Several promising anti-inflammatory and antitumor therapeutics are also built on this structure. Alternatively, quinolines provide frameworks for industrial uses including organic light-emitting diodes (OLEDs) and photovoltaic cells, as well as solvents for terpenes and resins. In addition, quinoline-based dyes such as ethyl red iodide (IV) and pinacyanol (V) have been used since the beginning of the nineteenth century in photographic plates [3]. The prevalence of the quinoline ring system in a vast range of medical and industrial settings can be ascribed mainly to its versatility and broad potential for functionalization. In fact, it is this versatility which earned it the designation of “privileged scaffold” in medicinal chemistry, a term coined by Evans in 1988 which refers to simple structural subunits present in diverse therapeutic compounds with distinctive receptor affinities [4]. Consequently, the synthesis of variously substituted quinolines has been a recurring endeavor for nearly a century and a half [5]. A multitude of synthetic methods have been established over this timeframe, which construct the quinoline ring from diverse starting materials and result in products with nearly limitless combinations of functionality. Molecules 2016, 21, 986; doi:10.3390/molecules21080986 www.mdpi.com/journal/molecules Molecules 2016, 21, 986 2 of 23 Molecules 2016, 21, 986 2 of 22 Molecules 2016, 21, 986 N 2 of 22 N HO H N HO N N MeO H N HO H HO N Cl N N NCF3 MeO CF H I II3 III N Cl N N CF N 3 CF3 + I II+ III N - N - N I Cl IV N V + + N - N - N FigureFigure 1. Structures 1. Structures of quinine ofI quinine(I), chloroquine (I); chloroquine (II), mefloquine (II); ( mefloquineIIICl ), ethyl red ( IIIiodide); ethyl (IV), redand pinacyanol iodide (IV ();V). and pinacyanol (V). IV V 2. Established Methods of Quinoline Synthesis Figure 1. Structures of quinine (I), chloroquine (II), mefloquine (III), ethyl red iodide (IV), and pinacyanol (V). 2. EstablishedMany methods Methods have of been Quinoline instituted Synthesis to react aniline with various annulation partners to obtain 2.quinolines. EstablishedMany methods One Methods of the have oldest of been Quinoline and instituted most enduring Synthesis to react of anilinesuch procedures with various is the annulationSkraup reaction partners (A, Figure to obtain 2). In 1880, Czech chemist Zdenko Hans Skraup heated aniline and glycerol with an oxidant in concentrated quinolines. One of the oldest and most enduring of such procedures is the Skraup reaction sulfuricMany acid, methods a method have that been is institutedstill commonly to react used ani forline the with production various annulation of heteroring-unsubstituted partners to obtain (A, Figure2 ). In 1880, Czech chemist Zdenko Hans Skraup heated aniline and glycerol with an quinolines.quinolines [6].One The of the Doebner oldest andmethod most (B), enduring introduced of such by proceduresOscar Doebner is the in Skraup 1887, combines reaction (A, aniline Figure with 2). oxidant in concentrated sulfuric acid, a method that is still commonly used for the production of Inan 1880, aldehyde Czech and chemist pyruvic Zdenko acid to Hans give 2-substitutedSkraup heated quinoline-4-carboxylic aniline and glycerol with acids. an A oxidant variation in ofconcentrated the Skraup heteroring-unsubstituted quinolines [6]. The Doebner method (B), introduced by Oscar Doebner in sulfuricprocedure, acid, the a Doebner–Vonmethod that is Miller still commonly reaction (C) used was for introduced the production in 1881 of andheteroring-unsubstituted uses α,β-unsaturated 1887,quinolinesaldehydes combines or[6]. anilineketones The Doebner withto obtain an method aldehyde 2- and (B), 4-substituted andintroduced pyruvic quinolinesby acid Oscar to giveDoebner under 2-substituted acidic in 1887, conditions. combines quinoline-4-carboxylic The aniline Conrad– with acids.anLimpach aldehyde A variation reaction and pyruvic of (D), the reported Skraupacid to givein procedure, 1887, 2-substituted is also the conducted Doebner–Vonquinoline-4-carboxylic by refluxing Miller in reactionacids. acid, A but variation (C) uses was β -ketoestersof introduced the Skraup as in 1881procedure,the and annulation uses theα, βpartnerDoebner–Von-unsaturated to give Miller aldehydes2- and reaction3-substituted or ketones(C) was quinolin-4-ols to introduced obtain 2- [7]. andin As1881 4-substituted a contemporaryand uses α quinolines,β-unsaturated example, under in acidicaldehydes1963 conditions. L.S. Povarov or ketones The and Conrad–Limpach tocoworkers obtain 2- reacted and 4-substituted reactionaryl aldehyde (D), quinolines reporteds and activated under in 1887, alkenesacidic is also conditions. to conductedform 2-arylquinolines The by Conrad– refluxing inLimpach acid,(E) [8]. but reaction uses β-ketoesters (D), reported as in the 1887, annulation is also conducted partner to by give refluxing 2- and in 3-substituted acid, but uses quinolin-4-ols β-ketoesters as [ 7]. Asthe a contemporary annulation partner example, to give in 19632- and L.S. 3-substituted PovarovA. and quinolin-4-ols coworkers reacted[7]. As a aryl contemporary aldehydes example, and activated in alkenes1963 L.S. to formPovarov 2-arylquinolines and coworkers (E)reacted [8]. aryl aldehydeSkraup s and activated alkenes to form 2-arylquinolines N (E) [8]. A. Skraup E. 2 B. HO N O Povarov N Doebner h P NAr , NR HO 4 O S 2 E. 2 B. O Ar- HO H Povarov CH N HO Doebner O h , B -C F P R O O NAr 3 O , NROH O E 4 HOt NH HO O 2 S 2 A H r-C HO OO HO H , B -C Δ F R O O OH O , 3 OE H + 4 t SO NH2 HO H 2 NR R O NR 1 2 O 1 R O R 3 1 R Δ 2 H + R2 , SO 4O O 2 R R OH H 1 O 2 NR1 R2 NR1 D. R3O R1 C. R2 Conrad-LimpachR Doebner-Von Miller 2 O O R OH 1 R2 Figure 2. Quinoline synthesis methods: Skraup reaction (A); Doebner reaction (B); Doebner–Von D. C. Miller reactionConrad-Limpach (C); Conrad–Limpach reaction (D); and Povarov reactionDoebner-Von (E). Miller FigureFigureAlternatively, 2. Quinoline2. Quinoline several synthesis synthesis other methods: estab methods:lished Skraup Skraup methods reaction reaction of quinol (A );(A Doebner);ine Doebner synthesis reaction reaction utilize (B); ( Doebner–VonB su); bstratesDoebner–Von other Miller than anilinereactionMiller in the (reactionC );cyclization Conrad–Limpach (C); Conrad–Limpach process. reactionThe Friedländer reaction (D); and (D Povarovreac); andtion Povarov reaction(F, Figure reaction (E 3),). reported (E). by Paul Friedländer in Alternatively, several other established methods of quinoline synthesis utilize substrates other than aniline in the cyclization process. The Friedländer reaction (F, Figure 3), reported by Paul Friedländer in Molecules 2016, 21, 986 3 of 23 Alternatively, several other established methods of quinoline synthesis utilize substrates other than aniline in the cyclization process. The Friedländer reaction (F, Figure3), reported by Paul FriedländerMolecules 2016 in 1882,, 21, 986uses 2-aminobenzaldehyde with another carbonyl component to form3 of 222- and 3-substituted quinolines. Similarly, the Pfitzinger (G) reaction combines isatin with a carbonyl 1882, uses 2-aminobenzaldehyde with another carbonyl component to form 2- and 3-substituted compound under basic conditions to give 2- and 3-substituted quinoline-4-carboxylic acids [9]. quinolines. Similarly, the Pfitzinger (G) reaction combines isatin with a carbonyl compound under Whilebasic not conditions an exhaustive to give list, 2- and these 3-substituted examples quino highlightline-4-carboxylic the breadth acids of[9]. options While not in an the exhaustive formation of quinolinelist, these ring examples systems. highlight the breadth of options in the formation of quinoline ring systems. R 1 R NH2 2 NR1 O R2 O F. Friedlander R O 1 R 2 NR O 1 O N R2 H O OH G. Pfitzinger FigureFigure 3. Quinoline 3. Quinoline synthesis synthesis methods: methods: Friedländer reaction reaction (F); (F and); and Pfitzinger Pfitzinger reaction reaction (G).
Recommended publications
  • Carla Brown Phd Thesis V5
    DESIGN AND SYNTHESIS OF NOVEL SMALL-MOLECULE ANTIMICROBIALS DESIGN AND SYNTHESIS OF NOVEL SMALL-MOLECULE ANTIMICROBIALS By CARLA E. BROWN, B. Art. Sc., M. Sc. A Thesis Submitted to the School of Graduate Studies in Partial Fulfilment of the Requirements for the Degree Doctor of Philosophy McMaster University © Copyright by Carla E. Brown, June 2017 Ph.D. Thesis – C. Brown; McMaster University – Chemistry and Chemical Biology McMaster University DOCTOR OF PHILOSOPHY (2017) Hamilton, Ontario (Chemical Biology) TITLE: Design and Synthesis of Novel Small-molecule Antimicrobials AUTHOR: Carla E. Brown, BArtSc. (McMaster University), M.Sc. (University of Toronto) SUPERVISOR: Professor James McNulty NUMBER OF PAGES: xiii, 281 ii Ph.D. Thesis – C. Brown; McMaster University – Chemistry and Chemical Biology There is a need to discover new antimicrobial drugs to combat drug-resistant infections. We are trying to find new molecules that can prevent the growth of parasites and viruses by developing and using novel chemical reactions, as well as by isolating new products from plants and fungi. This text describes a new way to make quinolines, a type of molecule found in many drugs. A molecule prepared by this method inhibited the parasite T. gondii at low concentrations. We have also identified quinazolinones, molecules that can be rapidly assembled by combining three components, which inhibit parasites and viruses. The thesis also includes a faster way to make derivatives of an antiviral molecule from daffodils, which can help determine which parts of the molecule are important for antiviral activity. We have also identified new molecules from the fungus Xylaria polymorpha and an antiviral compound from the Ficus benjamina tree.
    [Show full text]
  • Tautomer Identification and Tautomer Structure Generation Based on The
    J. Chem. Inf. Model. 2010, 50, 1223–1232 1223 Tautomer Identification and Tautomer Structure Generation Based on the InChI Code Torsten Thalheim,†,‡ Armin Vollmer,† Ralf-Uwe Ebert,† Ralph Ku¨hne,† and Gerrit Schu¨u¨rmann*,†,‡ UFZ Department of Ecological Chemistry, Helmholtz Centre for Environmental Research, Permoserstrasse 15, 04318 Leipzig, Germany, and Institute for Organic Chemistry, Technical University Bergakademie Freiberg, Leipziger Strasse 29, 09596 Freiberg, Germany Received March 27, 2010 An algorithm is introduced that enables a fast generation of all possible prototropic tautomers resulting from the mobile H atoms and associated heteroatoms as defined in the InChI code. The InChI-derived set of possible tautomers comprises (1,3)-shifts for open-chain molecules and (1,n)-shifts (with n being an odd number >3) for ring systems. In addition, our algorithm includes also, as extension to the InChI scope, those larger (1,n)-shifts that can be constructed from joining separate but conjugated InChI sequences of tautomer-active heteroatoms. The developed algorithm is described in detail, with all major steps illustrated through explicit examples. Application to ∼72 500 organic compounds taken from EINECS (European Inventory of Existing Commercial Chemical Substances) shows that around 11% of the substances occur in different heteroatom-prototropic tautomeric forms. Additional QSAR (quantitative structure-activity relationship) predictions of their soil sorption coefficient and water solubility reveal variations across tautomers up to more than two and 4 orders of magnitude, respectively. For a small subset of nine compounds, analysis of quantum chemically predicted tautomer energies supports the view that among all tautomers of a given compound, those restricted to H atom exchanges between heteroatoms usually include the thermodynamically most stable structures.
    [Show full text]
  • Determination of Solvent Effects on Ketoðenol Equilibria of 1,3-Dicarbonyl Compounds Using NMR: Revisiting a Classic Physical C
    In the Laboratory Determination of Solvent Effects on Keto–Enol Equilibria W of 1,3-Dicarbonyl Compounds Using NMR Revisiting a Classic Physical Chemistry Experiment Gilbert Cook* and Paul M. Feltman Department of Chemistry, Valparaiso University, Valparaiso, IN 46383; *[email protected] “The influence of solvents on chemical equilibria was discovered in 1896, simultaneously with the discovery of keto–enol tautomerism in 1,3-dicarbonyl compounds” (1). The solvents were divided into two groups according to their ability to isomerize compounds. The study of the keto–enol tautomerism of β-diketones and β-ketoesters in a variety of solvents using proton NMR has been utilized as a physical Figure 1. The β-dicarbonyl compounds studied in the experiment. chemistry experiment for many years (2, 3). The first reported use of NMR keto–enol equilibria determination was by Reeves (4). This technique has been described in detail in an experiment by Garland, Nibler, and Shoemaker (2). panded (i) to give an in-depth analysis of factors influencing The most commonly used β-diketone for these experi- solvent effects in tautomeric equilibria and (ii) to illustrate ments is acetylacetone (Scheme I). Use of proton NMR is a the use of molecular modeling in determining the origin of viable method for measuring this equilibrium because the a molecule’s polarity. The experiment’s original benefits of tautomeric keto–enol equilibrium is slow on the NMR time using proton NMR as a noninvasive method of evaluating scale, but enol (2a)–enol (2b) tautomerism is fast on this scale equilibrium are maintained. (5). It has been observed that acyclic β-diketones and β- Experimental Procedure ketoesters follow Meyer’s rule of a shift in the tautomeric equi- librium toward the keto tautomer with increasing solvent Observations of the solvent effects for three other 1,3- polarity (6).
    [Show full text]
  • Mechanisms of Carbonyl Activation by BINOL N-Triflylphosphoramides
    Mechanisms of Carbonyl Activation by BINOL N-Triflylphosphoramides Enantioselective Nazarov Cyclizations Lovie-toon, Joseph P.; Tram, Camilla Mia; Flynn, Bernard L.; Krenske, Elizabeth H. Published in: ACS Catalysis DOI: 10.1021/acscatal.7b00292 Publication date: 2017 Document version Publisher's PDF, also known as Version of record Citation for published version (APA): Lovie-toon, J. P., Tram, C. M., Flynn, B. L., & Krenske, E. H. (2017). Mechanisms of Carbonyl Activation by BINOL N-Triflylphosphoramides: Enantioselective Nazarov Cyclizations . ACS Catalysis, 7(5), 3466-3476. https://doi.org/10.1021/acscatal.7b00292 Download date: 09. Apr. 2020 This is an open access article published under an ACS AuthorChoice License, which permits copying and redistribution of the article or any adaptations for non-commercial purposes. Research Article pubs.acs.org/acscatalysis Mechanisms of Carbonyl Activation by BINOL N‑Triflylphosphoramides: Enantioselective Nazarov Cyclizations Joseph P. Lovie-Toon,† Camilla Mia Tram,†,‡,∥ Bernard L. Flynn,§ and Elizabeth H. Krenske*,† † School of Chemistry and Molecular Biosciences, The University of Queensland, Brisbane, Queensland 4072, Australia ‡ University of Copenhagen, Universitetsparken 5, DK-2100 Copenhagen Ø, Denmark § Medicinal Chemistry, Monash Institute of Pharmaceutical Sciences, Monash University, 381 Royal Parade, Parkville, Victoria 3052, Australia *S Supporting Information ABSTRACT: BINOL N-triflylphosphoramides are versatile organocatalysts for reactions of carbonyl compounds. Upon activation
    [Show full text]
  • Downloaded on 2017-02-12T13:48:37Z
    Title Synthesis and evaluation of novel quinolines and quinazolinediones as potential anti-cancer agents Author(s) Greaney, Kieran Publication date 2014 Original citation Greaney, K. 2014. Synthesis and evaluation of novel quinolines and quinazolinediones as potential anti-cancer agents. PhD Thesis, University College Cork. Type of publication Doctoral thesis Rights © 2014, Kieran Greaney. http://creativecommons.org/licenses/by-nc-nd/3.0/ Embargo information Please note that Chapters 4-8 (pp.87-262) and Appendices (pp.I-XXIII) are unavailable due to a restriction requested by the author. Embargo lift date 2018-11-05T12:28:56Z Item downloaded http://hdl.handle.net/10468/2042 from Downloaded on 2017-02-12T13:48:37Z Synthesis and Evaluation of Novel Quinolines and Quinazolinediones as Potential Anti-Cancer Agents Kieran Greaney, B.Sc. Thesis presented for the degree of Doctor of Philosophy to National University of Ireland, Cork. Department of Chemistry Supervisor: Dr. Florence McCarthy Head of Department: Prof. Martyn Pemble May 2014 Table of Chapters Acknowledgements iii Declaration iv Abstract vi Abbreviations viii 1.0 Biological Introduction 12 2.0 Quinoline Chemical Introduction 37 3.0 Quinazoline Chemical Introduction 62 4.0 Aims and Objectives 87 5.0 Chemical Results and Discussion 94 6.0 Biological Results and Discussion 178 7.0 Current Perspectives 196 8.0 Experimental 204 9.0 References 263 Appendices Acknowledgements To express my thanks through words seems such an injustice but I’ll give it my best shot. First and foremost I would like to express my deepest gratitude to Dr. Florence McCarthy whose guidance and support during this project has been nothing short of immense, and for having me as part of such a great research group.
    [Show full text]
  • New Investigations in the Interrupted Nazarov Reaction by Owen Scadeng a Thesis Submitted in Partial Fulfillment of the Requirem
    New Investigations in the Interrupted Nazarov Reaction by Owen Scadeng A thesis submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy Department of Chemistry University of Alberta © Owen Scadeng, 2014 Abstract The five-membered carbocycle is a structural motif found in a plethora of natural products and bioactive compounds. The Nazarov reaction has emerged as an effective method to synthesize cyclopentenones and acts as a tool for adding structural complexity to molecular frameworks. This dissertation will discuss several projects involving the Nazarov cyclization and its use to build functionality to the cyclopentanoid framework. Chapter 1 provides a detailed recount of recent advances in Nazarov chemistry. Focus on methods to induce enantioselectivity, the use of alternative substrates as Nazarov reaction precursors, and the use of the Nazarov reaction in total synthesis is presented. Chapter 2 describes the formation of bridged bicyclic compounds via a [3+3]-cycloaddition between organoazides and the Nazarov intermediate. These cycloadducts were also found to thermally decompose to produce ring-enlarged dihydropyridones and 6-methylenepiperidinones. In Chapter 3, details the attempted development of a domino Nazarov cyclization/Baeyer-Villiger oxidation are provided. While the desired 3,4- dihydropyra-2-one was formed with the use of bis(trimethylsilyl)peroxide as the oxidant, optimization of the transformation failed to produce synthetically useful yields. Chapter 4 divulges the findings of Nazarov cyclizations of 2-hydroxyalkyl- 1,4-diene-3-ones. Originally proposed as substrates that could undergo domino Nazarov cyclization/semipinacol rearrangements, these compounds were found to readily produce alkylidene cyclopentenones under Lewis acid conditions.
    [Show full text]
  • Tautomer-Selective Spectroscopy of Nucleobases, Isolated in the Gas Phase Mattanjah S
    177 7 Tautomer-Selective Spectroscopy of Nucleobases, Isolated in the Gas Phase Mattanjah S. de Vries 7.1 Introduction In his book The Double Helix, James Watson describes an early proposal for DNA structure in which equal bases pair with each other. He writes: ‘‘My scheme was torn to shreds the following noon. Against me was the awkward chemical fact that I had chosen the wrong tautomeric forms for guanine and thymine.’’ This fact was pointed out to him by the American crystallographer Jerry Donahue who ‘‘ ... protested that the idea would not work. The tautomeric forms I had copied out of Davidson’s book were, in Jerry’s opinion, incorrectly assigned. My immediate retort that several other texts also pictured guanine and thymine in the enol form cut no ice with Jerry. Happily he let out that for years organic chemists have been arbitrarily favoring particular tautomeric forms over the alternatives on only the flimsiest of grounds’’ [1]. Without the correct keto form of these bases, Watson and Crick could not have arrived at their successful structure of DNA. In fact, for each of the bases, the keto tautomer is the form normally occurring in DNA. The rare imino and enol forms can lead to alternate base-pair combinations and thus cause mutations in replication. This type of mutation is called a tautomeric shift [2, 3]. Possible mismatches include iminoC–A, enolT–G, C–iminoA, and T–enolG. Tautomerization can occur in DNA by single or double proton transfer. In solution equilibrium, generally the keto form dominates, complicating efforts to study the properties of the individual forms.
    [Show full text]
  • Synthesis of New 2- and 3-Hydroxyquinoline- 4-Carboxylic Acid Derivatives As Potential Antioxidants
    DOI 10.1515/hc-2013-0163 Heterocycl. Commun. 2014; 20(2): 81–88 Mohammed A. Massoud, Serry A. El Bialy, Waleed A. Bayoumi* and Walaa M. El Husseiny Synthesis of new 2- and 3-hydroxyquinoline- 4-carboxylic acid derivatives as potential antioxidants Abstract: A new series of 3-aryl-2-hydroxyquinoline- derivatives are 7-chloro-4-hydroxyquinoline (6) and 7-fluoro- 4-carboxylic acids 17a,b, 2-aryl-3-hydroxyquinoline- 4-hydroxyquinoline (7), which have been characterized by 4-carboxylic acids 12a–d and their derivatives 13–16 and their antioxidant effect against free radical initiated peroxi- 18–21 were designed, synthesized and evaluated for their dation [10]. Additional synthetic quinolone derivatives with antioxidant activity using the ABTS assay method. Com- effective antioxidant activity are TA 270 (8) [11] and quin- pounds 14 and 21a,b showed good antioxidant activity, oline-3-carbohydrazides (9) [12] (Figure 1). 2-Substituted whereas the remaining compounds displayed mild to benzimidazoles were recently reported to possess antioxi- moderate activity. All compounds were characterized by dant activity [13]. Based on the previous data and literature physical and spectral data. review, new starting synthons were designed and synthe- sized: 3-aryl-2-hydroxyquinoline-4-carboxylic acids (17a,b) Keywords: ABTS assay; antioxidant; benzimidazole; quin- and 2-aryl-3-hydroxyquinoline-4-carboxylic acids (12a-d). oline-4-carboxylic acid; synthesis. Hybridization with several pharmacophoric moieties were achieved in order to explore the effect on enhancing the antioxidant activity. The following analogs were obtained: *Corresponding author: Waleed A. Bayoumi, Faculty of Pharmacy, ester derivatives ( , and ), O-acetyl derivatives Department of Pharmaceutical Organic Chemistry, 13a-d 15 18a,b Mansoura University, Mansoura 35516, Egypt, (16a-d) and O-alkyl/aralkyl derivatives (19a-d and 20a,b).
    [Show full text]
  • Predicting Tautomer Ratios in Solution
    bioRxiv preprint doi: https://doi.org/10.1101/2020.10.24.353318; this version posted October 25, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. October 24, 2020 1 Fitting quantum machine learning 2 potentials to experimental free energy 3 data: Predicting tautomer ratios in 4 solution 5 Marcus Wieder* (0000-0003-2631-8415)1*, Josh Fass* (0000-0003-3719-266X)1,2, John D. Chodera 6 (0000-0003-0542-119X)1 7 *contributed equally to this work; 1Computational and Systems Biology Program, Sloan Kettering Institute, Memorial 8 Sloan Kettering Cancer Center, New York, NY 10065, USA; 2Tri-Institutional PhD Program in Computational Biology and 9 Medicine, Weill Cornell Graduate School of Medical Sciences, New York, NY 10065, USA 10 *For correspondence: 11 [email protected] (MW) 12 13 Abstract The computation of tautomer rations of druglike molecules is enormously important in computer- 14 aided drug discovery, as over a quarter of all approved drugs can populate multiple tautomeric species in so- 15 lution. Unfortunately, accurate calculations of aqueous tautomer ratios—the degree to which these species 16 must be penalized in order to correctly account for tautomers in modeling binding for computer-aided drug 17 discovery—is surprisingly difficult. While quantum chemical approaches to computing aqueous tautomer 18 ratios using continuum solvent models and rigid-rotor harmonic-oscillator thermochemistry are currently 19 state of the art, these methods are still surprisingly inaccurate despite their enormous computational ex- 20 pense.
    [Show full text]
  • A Novel Aza-Nazarov Cyclization of Quinazolinonyl Enones: a Facile Access to C- Ring Substituted Vasicinones and Luotonins
    A Novel Aza-Nazarov Cyclization of Quinazolinonyl Enones: A Facile Access to C- Ring Substituted Vasicinones and Luotonins Sivappa Rasapalli,a* Vamshikrishna Reddy Sammeta,a Zachary F. Murphy,a Yanchang Huang,a Jeffrey A. Boertha, James A. Golena and Sergey N. Savinovb a Department of Chemistry and Biochemistry, University of Massachusetts, 287 Old Westport Rd, N. Dartmouth, MA-02747, USA. b Department of Biochemistry and Molecular Biology. UMass Amherst, Amherst, MA-01003, USA [email protected] Received Date (will be automatically inserted after manuscript is accepted) ABSTRACT: A facile four-step synthetic access to C-ring substituted luotonins and vasicinones has been realized via a novel super acid mediated aza-Nazarov cyclization of quinazolinonyl enones. The regioselectivity of the cyclization is highly dependent on proton availability and overall polarity of the reaction medium. Quinazolinone is one of the most privileged through inhibition of topoisomerase-I (topo-I), through pharmacophores in medicinal chemistry.1, 2 There are mechanism of action analogous to camptothecin (CPT) more than 20 drugs that are currently in market (3),8 which attracted the attention of medchem and containing thequinazolinone core.3 Additionally, synchem communities alike.9 This increased attention is pharmacologically important natural products harboring partly due to toxic side effects associated with CPT and the quinazolinone core are also abundant and are known its analogs, due to hydrolysis of the E-ring in basic pH to possess wide range of
    [Show full text]
  • Enolate Chemistry
    Prof. Dr. Burkhard König, Institut für Organische Chemie, Uni Regensburg 1 Enolate Chemistry 1. Some Basics In most cases the equilibrium lies almost completely on the side of the ketone. The ketone tautomer is electrophilic and reacts with nucleophiles: The enol tautomer is nucleophilic and reacts with electrophiles. There are two possible products - enols are ambident nucleophiles: The nucleophilic enol tautomer (and especially the enolate variant) is one of the most important reactive species for C-C bond formation. Treat a ketone with an appropriate base and can get deprotonation at the α-position to form an enolate: Enolates are synthetically much more useful than enols (although they react analogously). Imine anions and eneamines are synthetic equivalents of enolate anions. Li N N H H Imine anion eneamine By knowing the pKa values of the relevant acidic protons it is possible to predict suitable bases for forming the corresponding enolates. Prof. Dr. Burkhard König, Institut für Organische Chemie, Uni Regensburg 2 Some Important pKa Values - - - O O HC N HC3 NO2 H2CN+ 2 + O O pKa ~ 10 - Enolates are nucleophiles and ketones are electrophiles - therefore there is always the potential problem for self condensation. If this is desirable we need to use a base which does not completely deprotonate the carbonyl compound i.e. set up an equilibrium. This is best achieved when the pKa of the carbonyl group and conjugate acid (of the base) are similar: Prof. Dr. Burkhard König, Institut für Organische Chemie, Uni Regensburg 3 pKa (tBuOH) ~ 18. A stronger base. pKa difference of 2. Ratio of ketone to enolate will be of the order 100:1 i.e.
    [Show full text]
  • I Dedicate This Work with Deep Love and Respect to the Soul of My Father
    Dedication I dedicate this work with deep love and respect to The soul of my father, To my mother My brother My sisters And to my friends. I Acknowledgments Praise be to Allah the Almighty to all his blessing to us, and I would like to express my sincere gratitude and appreciation to my supervisor: Prof. Dr. Ahmed Elsadig Mohammed Saeed, for suggesting the idea of this work and guidance during all stages of research, and my deep gratefulness to my Co-supervisor: Dr. Amna Bintwahab Elrashid Mohammed, my gratitude goes also to Dr. Rafee Eljack, Dr. Abubaker Mohammed Osman, Rami Baha Aldin for 1H and 13CNMR analysis and Valantina for helping me to analyize my samples, my deep gratefulness to the staff of laboratory techniques for their help, and to all my colleagues in the research lab, and my sincere thanks to my family for their love and support. II Abstract A series of some new substituted quinolines were synthesized by Doebner reaction, a three component coupling of various aromatic amines with two aldehydes and phenyl pyruvic acid. The substituted 2,3-diary-6-acetyl-quinoline-4-carboxylic acids reacted with various aromatic aldehydes in the presence of basic medium using Claisen-Schmidt condensation to afford the corresponding chalcones. The substituted chalcones, on condensation with hydroxylamine hydrochloride in ethanol furnished isoxazoles derivatives. Other quinoline derivatives were synthesized in this study by using an aryl amine with acetylacetone as Combes reaction, Knorr reaction between aryl amine and ethylacetoacetate with heating above 100ºC and Conrad-Limpach quinoline synthesis a thermal condensation of aryl amine with ethylacetoacetate.
    [Show full text]