In Situ Determination of Cellular DMSP and Pigment Quotas in a Prorocentrum Minimum Bloom Near the Falkland Islands Tyler Cyronaka, Erin O’Reilly B, Peter A
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University of Oklahoma
UNIVERSITY OF OKLAHOMA GRADUATE COLLEGE MACRONUTRIENTS SHAPE MICROBIAL COMMUNITIES, GENE EXPRESSION AND PROTEIN EVOLUTION A DISSERTATION SUBMITTED TO THE GRADUATE FACULTY in partial fulfillment of the requirements for the Degree of DOCTOR OF PHILOSOPHY By JOSHUA THOMAS COOPER Norman, Oklahoma 2017 MACRONUTRIENTS SHAPE MICROBIAL COMMUNITIES, GENE EXPRESSION AND PROTEIN EVOLUTION A DISSERTATION APPROVED FOR THE DEPARTMENT OF MICROBIOLOGY AND PLANT BIOLOGY BY ______________________________ Dr. Boris Wawrik, Chair ______________________________ Dr. J. Phil Gibson ______________________________ Dr. Anne K. Dunn ______________________________ Dr. John Paul Masly ______________________________ Dr. K. David Hambright ii © Copyright by JOSHUA THOMAS COOPER 2017 All Rights Reserved. iii Acknowledgments I would like to thank my two advisors Dr. Boris Wawrik and Dr. J. Phil Gibson for helping me become a better scientist and better educator. I would also like to thank my committee members Dr. Anne K. Dunn, Dr. K. David Hambright, and Dr. J.P. Masly for providing valuable inputs that lead me to carefully consider my research questions. I would also like to thank Dr. J.P. Masly for the opportunity to coauthor a book chapter on the speciation of diatoms. It is still such a privilege that you believed in me and my crazy diatom ideas to form a concise chapter in addition to learn your style of writing has been a benefit to my professional development. I’m also thankful for my first undergraduate research mentor, Dr. Miriam Steinitz-Kannan, now retired from Northern Kentucky University, who was the first to show the amazing wonders of pond scum. Who knew that studying diatoms and algae as an undergraduate would lead me all the way to a Ph.D. -
The Mitochondrial Genome and Transcriptome of the Basal
View metadata, citation and similar papers at core.ac.uk brought to you by CORE GBEprovided by PubMed Central The Mitochondrial Genome and Transcriptome of the Basal Dinoflagellate Hematodinium sp.: Character Evolution within the Highly Derived Mitochondrial Genomes of Dinoflagellates C. J. Jackson, S. G. Gornik, and R. F. Waller* School of Botany, University of Melbourne, Australia *Corresponding author: E-mail: [email protected]. Accepted: 12 November 2011 Abstract The sister phyla dinoflagellates and apicomplexans inherited a drastically reduced mitochondrial genome (mitochondrial DNA, mtDNA) containing only three protein-coding (cob, cox1, and cox3) genes and two ribosomal RNA (rRNA) genes. In apicomplexans, single copies of these genes are encoded on the smallest known mtDNA chromosome (6 kb). In dinoflagellates, however, the genome has undergone further substantial modifications, including massive genome amplification and recombination resulting in multiple copies of each gene and gene fragments linked in numerous combinations. Furthermore, protein-encoding genes have lost standard stop codons, trans-splicing of messenger RNAs (mRNAs) is required to generate complete cox3 transcripts, and extensive RNA editing recodes most genes. From taxa investigated to date, it is unclear when many of these unusual dinoflagellate mtDNA characters evolved. To address this question, we investigated the mitochondrial genome and transcriptome character states of the deep branching dinoflagellate Hematodinium sp. Genomic data show that like later-branching dinoflagellates Hematodinium sp. also contains an inflated, heavily recombined genome of multicopy genes and gene fragments. Although stop codons are also lacking for cox1 and cob, cox3 still encodes a conventional stop codon. Extensive editing of mRNAs also occurs in Hematodinium sp. -
Insights Into Alexandrium Minutum Nutrient Acquisition, Metabolism and Saxitoxin Biosynthesis Through Comprehensive Transcriptome Survey
biology Article Insights into Alexandrium minutum Nutrient Acquisition, Metabolism and Saxitoxin Biosynthesis through Comprehensive Transcriptome Survey Muhamad Afiq Akbar 1, Nurul Yuziana Mohd Yusof 2 , Fathul Karim Sahrani 2, Gires Usup 2, Asmat Ahmad 1, Syarul Nataqain Baharum 3 , Nor Azlan Nor Muhammad 3 and Hamidun Bunawan 3,* 1 Department of Biological Sciences and Biotechnology, Faculty of Science and Technology, Universiti Kebangsaan Malaysia, Bangi 43600, Malaysia; muhdafi[email protected] (M.A.A.); [email protected] (A.A.) 2 Department of Earth Science and Environment, Faculty of Science and Technology, Universiti Kebangsaan Malaysia, Bangi 43600, Malaysia; [email protected] (N.Y.M.Y.); [email protected] (F.K.S.); [email protected] (G.U.) 3 Institute of System Biology, Universiti Kebangsaan Malaysia, Bangi 43600, Malaysia; [email protected] (S.N.B.); [email protected] (N.A.N.M.) * Correspondence: [email protected]; Tel.: +60-389-214-570 Simple Summary: Alexandrium minutum is one of the causing organisms for the occurrence of harmful algae bloom (HABs) in marine ecosystems. This species produces saxitoxin, one of the deadliest neurotoxins which can cause human mortality. However, molecular information such as genes and proteins catalog on this species is still lacking. Therefore, this study has successfully Citation: Akbar, M.A.; Yusof, N.Y.M.; characterized several new molecular mechanisms regarding A. minutum environmental adaptation Sahrani, F.K.; Usup, G.; Ahmad, A.; and saxitoxin biosynthesis. Ultimately, this study provides a valuable resource for facilitating future Baharum, S.N.; Muhammad, N.A.N.; dinoflagellates’ molecular response to environmental changes. -
Scrippsiella Trochoidea (F.Stein) A.R.Loebl
MOLECULAR DIVERSITY AND PHYLOGENY OF THE CALCAREOUS DINOPHYTES (THORACOSPHAERACEAE, PERIDINIALES) Dissertation zur Erlangung des Doktorgrades der Naturwissenschaften (Dr. rer. nat.) der Fakultät für Biologie der Ludwig-Maximilians-Universität München zur Begutachtung vorgelegt von Sylvia Söhner München, im Februar 2013 Erster Gutachter: PD Dr. Marc Gottschling Zweiter Gutachter: Prof. Dr. Susanne Renner Tag der mündlichen Prüfung: 06. Juni 2013 “IF THERE IS LIFE ON MARS, IT MAY BE DISAPPOINTINGLY ORDINARY COMPARED TO SOME BIZARRE EARTHLINGS.” Geoff McFadden 1999, NATURE 1 !"#$%&'(&)'*!%*!+! +"!,-"!'-.&/%)$"-"!0'* 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 2& ")3*'4$%/5%6%*!+1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 7! 8,#$0)"!0'*+&9&6"*,+)-08!+ 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 :! 5%*%-"$&0*!-'/,)!0'* 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 ;! "#$!%"&'(!)*+&,!-!"#$!'./+,#(0$1$!2! './+,#(0$1$!-!3+*,#+4+).014!1/'!3+4$0&41*!041%%.5.01".+/! 67! './+,#(0$1$!-!/&"*.".+/!1/'!4.5$%"(4$! 68! ./!5+0&%!-!"#$!"#+*10+%,#1$*10$1$! 69! "#+*10+%,#1$*10$1$!-!5+%%.4!1/'!$:"1/"!'.;$*%."(! 6<! 3+4$0&41*!,#(4+)$/(!-!0#144$/)$!1/'!0#1/0$! 6=! 1.3%!+5!"#$!"#$%.%! 62! /0+),++0'* 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111<=! -
Harmful Algal Blooms in Coastal Water of China in 2011
Harmful Algae Blooms in Coastal Waters of China in 2011 Ruixiang Li, Zhu Mingyuan and Wang Zongling First Institute of Oceanography,SOA,Qingdao ,China E-mail:[email protected] The frequency and Area of HAB in China Sea in 2011 total affected area of 6076 km2 Season of occurrence of HABs in 2011 HAB events month There were 21 species of HAB in 2011 13 records : Prorocentrum donghaience bloom only in East China Sea 11 records: Noctiluca scintillans 7 records: Skeletonema costatum 3 records: Akashiwo sanguinea 2 recoeds: Phaeocystis globosa, Heterosigma akashiwo, Gyrodinium spirale, 1 record;Cochlodinium polykrikoidis,Prorocentrum minimun, Karenia breve,Chattonella,sp.,Chattonella antiqua, Gymnodinium sp.(may be Karlodinium ) , Pseudonitzschia pungens, Eucampia zoodiacus, Leptocylindrus danicus, Rhizosolenia delicatula, et.al., Aureococcus anophagefferen ( Belong to PELAGOPHYCEAE) Bohai Sea East China Sea Yellow Sea South China Sea HAB events average HABs in coastal waters of china from 2007 to 2011 Area of HABs in coastal waters of china from 2007 to 2011 Bohai Sea East China Sea Yellow Sea South China Sea ) 2 km ( HAB Area average Compared with HAB in recent 5 years, HABs in 2011 were lowest both in frequency and area affected. The season with frequent HAB was from May to September Percent of dinoflagellates and other flagellates bloom year The HAB caused by dinoflagellates and other flagellates were increased. Noctiluca scintillans bloom Area and times of bloom in 2011 km2 km2 km2 km2 km2 dinoflagellate bloom diatom bloom other bloom -
Genetic and Phenotypic Diversity Characterization of Natural Populations of the Parasitoid Parvilucifera Sinerae
Vol. 76: 117–132, 2015 AQUATIC MICROBIAL ECOLOGY Published online October 22 doi: 10.3354/ame01771 Aquat Microb Ecol OPENPEN ACCESSCCESS Genetic and phenotypic diversity characterization of natural populations of the parasitoid Parvilucifera sinerae Marta Turon1, Elisabet Alacid1, Rosa Isabel Figueroa2, Albert Reñé1, Isabel Ferrera1, Isabel Bravo3, Isabel Ramilo3, Esther Garcés1,* 1Departament de Biologia Marina i Oceanografia, Institut de Ciències del Mar, CSIC, Pg. Marítim de la Barceloneta 37-49, 08003 Barcelona, Spain 2Department of Biology, Lund University, Box 118, 221 00 Lund, Sweden 3Centro Oceanográfico de Vigo, IEO (Instituto Español de Oceanografía), Subida a Radio Faro 50, 36390 Vigo, Spain ABSTRACT: Parasites exert important top-down control of their host populations. The host−para- site system formed by Alexandrium minutum (Dinophyceae) and Parvilucifera sinerae (Perkinso- zoa) offers an opportunity to advance our knowledge of parasitism in planktonic communities. In this study, DNA extracted from 73 clonal strains of P. sinerae, from 10 different locations along the Atlantic and Mediterranean coasts, was used to genetically characterize this parasitoid at the spe- cies level. All strains showed identical sequences of the small and large subunits and internal tran- scribed spacer of the ribosomal RNA, as well as of the β-tubulin genes. However, the phenotypical characterization showed variability in terms of host invasion, zoospore success, maturation time, half-maximal infection, and infection rate. This characterization grouped the strains within 3 phe- notypic types distinguished by virulence traits. A particular virulence pattern could not be ascribed to host-cell bloom appearance or to the location or year of parasite-strain isolation; rather, some parasitoid strains from the same bloom significantly differed in their virulence traits. -
Dinophyceae Can Use Exudates As Weapons Against the Parasite Amoebophrya Sp
www.nature.com/ismecomms ARTICLE Dinophyceae can use exudates as weapons against the parasite Amoebophrya sp. (Syndiniales) ✉ Marc Long 1 , Dominique Marie2, Jeremy Szymczak2, Jordan Toullec1, Estelle Bigeard2, Marc Sourisseau1, Mickael Le Gac1, Laure Guillou2 and Cécile Jauzein1 © The Author(s) 2021 Parasites in the genus Amoebophrya sp. infest dinoflagellate hosts in marine ecosystems and can be determining factors in the demise of blooms, including toxic red tides. These parasitic protists, however, rarely cause the total collapse of Dinophyceae blooms. Experimental addition of parasite-resistant Dinophyceae (Alexandrium minutum or Scrippsiella donghaienis) or exudates into a well-established host-parasite coculture (Scrippsiella acuminata-Amoebophrya sp.) mitigated parasite success and increased the survival of the sensitive host. This effect was mediated by waterborne molecules without the need for a physical contact. The strength of the parasite defenses varied between dinoflagellate species, and strains of A. minutum and was enhanced with increasing resistant host cell concentrations. The addition of resistant strains or exudates never prevented the parasite transmission entirely. Survival time of Amoebophrya sp. free-living stages (dinospores) decreased in presence of A. minutum but not of S. donghaienis. Parasite progeny drastically decreased with both species. Integrity of the dinospore membrane was altered by A. minutum, providing a first indication on the mode of action of anti-parasitic molecules. These results demonstrate that extracellular defenses can be an effective strategy against parasites that protects not only the resistant cells producing them, but also the surrounding community. ISME Communications; (2021) 1:34 ; https://doi.org/10.1038/s43705-021-00035-x INTRODUCTION of the same species suggests a genetic determinism underlying Parasites, thought to account for half of species richness in some host specialization [18]. -
Feeding by Common Heterotrophic Protist Predators on Seven Prorocentrum Species
Research Article Algae 2020, 35(1): 61-78 https://doi.org/10.4490/algae.2020.35.2.28 Open Access Feeding by common heterotrophic protist predators on seven Prorocentrum species Ji Hyun You1, Hae Jin Jeong1,2,*, Hee Chang Kang1, Jin Hee Ok1, Sang Ah Park1 and An Suk Lim3 1School of Earth and Environmental Sciences, College of Natural Sciences, Seoul National University, Seoul 08826, Korea 2Research Institute of Oceanography, Seoul National University, Seoul 08826, Korea 3Division of Life Science, Gyeongsang National University, Jinju 52828, Korea Species belonging to the dinoflagellate genus Prorocentrum are known to cause red tides or harmful algal blooms. To understand the dynamics of a Prorocentrum sp., its growth and mortality due to predation need to be assessed. However, there are only a few Prorocentrum spp. for which heterotrophic protist predators have been reported. We explored feed- ing by the common heterotrophic dinoflagellates Gyrodinium dominans, Oxyrrhis marina, Pfiesteria piscicida, Oblea rotunda, and Polykrikos kofoidii and the naked ciliate Strombidinopsis sp. (approx. 90 µm cell length) on the planktonic species Prorocentrum triestinum, P. cordatum, P. donghaiense, P. rhathymum, and P. micans as well as the benthic spe- cies P. lima and P. hoffmannianum. All heterotrophic protists tested were able to feed on the planktonic prey species. However, O. marina and O. rotunda did not feed on P. lima and P. hoffmannianum, while G. dominans, P. kofoidii, and Strombidinopsis sp. did. The growth and ingestion rates of G. dominans and P. kofoidii on one of the seven Prorocentrum spp. were significantly different from those on other prey species. -
Feeding by Red-Tide Dinoflagellates on the Cyanobacterium Synechococcus
AQUATIC MICROBIAL ECOLOGY Vol. 41: 131–143, 2005 Published November 25 Aquat Microb Ecol Feeding by red-tide dinoflagellates on the cyanobacterium Synechococcus Hae Jin Jeong1,*, Jae Yeon Park1, Jae Hoon Nho2, Myung Ok Park1, Jeong Hyun Ha1, Kyeong Ah Seong1, Chang Jeng3, Chi Nam Seong4, Kwang Ya Lee5, Won Ho Yih6 1School of Earth and Environmental Sciences, College of Natural Sciences, Seoul National University, Seoul 151-747, Republic of Korea 2Korean Oceanographic Research and Development Institution, Ansan 426-744, Republic of Korea 3Institute of Marine Biology, National Taiwan Ocean University, 2 Pei-Ning Rd., Keelung 20224, Taiwan, ROC 4Department of Biological Science, School of Natural Science, Sunchon National University, Sunchon 540-742, Republic of Korea 5Rural Research Institute, Korea Agricultural & Rural Infrastructure Corporation, Sa-dong, Sangrok-Gu, Ansan, Gyonggi 426-170, Republic of Korea 6Department of Oceanography, College of Ocean Science and Technology, Kunsan National University, Kunsan 573-701, Republic of Korea ABSTRACT: We investigated the feeding by 18 red-tide dinoflagellate species on the cyanobacterium Synechococcus sp. We also calculated grazing coefficients by combining the field data on abundances of the dinoflagellates Prorocentrum donghaiense and P. micans and co-occurring Synechococcus spp. with laboratory data on ingestion rates obtained in the present study. All 17 cultured red-tide dinoflagel- lates tested (Akashiwo sanguinea, Alexandrium catenella, A. minutum, A. tamarense, Cochlodinium polykrikoides, Gonyaulax polygramma, G. spinifera, Gymnodinium catenatum, G. impudicum, Hetero- capsa rotundata, H. triquetra, Karenia brevis, Lingulodinium polyedrum, Prorocentrum donghaiense, P. minimum, P. micans, and Scrippsiella trochoidea) were able to ingest Synechococcus. Also, Synecho- coccus cells were observed inside the protoplasms of P. -
Jahresbericht 2004 Landesamt Für Natur Und Umwelt
Landesamt für Natur und Umwelt des Landes Schleswig-Holstein Jahresbericht 2004 Landesamt für Natur und Umwelt Herausgeber: Landesamt für Natur und Umwelt des Landes Schleswig-Holstein Hamburger Chaussee 25 24220 Flintbek Tel.: 0 43 47 / 704-0 www.lanu-sh.de Ansprechpartner: Martin Schmidt, Tel.: 0 43 47 / 704-243 Titelfoto: Die Rotbauchunke (Bombina bombina) ist Zielart des internationalen LIFE-Projektes „Management von Rotbauchunkenpopulationen im Ostseeraum”. Die Art wird wegen ihres melodischen Rufes in Dänemark auch Klokkefrø (Glockenfrosch) genannt, da ein „Konzert” dieser Art an entferntes Kirchenglockengeläut erinnert. Das LANU ist Partner in dem von 2004 bis 2009 laufenden Projekt, das die Stiftung Naturschutz Schleswig-Holstein beantragt hat (www.life-bombina.de). (Foto: Hauke Drews) Fotos im Innenteil: wenn nicht anders angegeben, Autorenschaft LANU Herstellung: Pirwitz Druck & Design, Kiel November 2005 ISBN: 3-937937-02-1 Schriftenreihe LANU SH - Jahresberichte; 9 Die Jahresberichte des LANU ab 1996 finden Sie auch im Internet unter www.lanu-sh.de Diese Broschüre wurde auf Recyclingpapier hergestellt. Diese Druckschrift wird im Rahmen der Öffentlichkeitsarbeit der schleswig- holsteinischen Landesregierung heraus- gegeben. Sie darf weder von Parteien noch von Personen, die Wahlwerbung oder Wahlhilfe betreiben, im Wahl- kampf zum Zwecke der Wahlwerbung verwendet werden. Auch ohne zeit- lichen Bezug zu einer bevorstehenden Wahl darf die Druckschrift nicht in einer Weise verwendet werden, die als Partei- nahme der Landesregierung zu Gunsten einzelner Gruppen verstanden werden könnte. Den Parteien ist es gestattet, die Druckschrift zur Unterrichtung ihrer eigenen Mitglieder zu verwenden. Die Landesregierung im Internet: www.landesregierung.schleswig-holstein.de Inhalt Vorwort ............................................................................................................................................6 Wolfgang Vogel Monitoring von Klimaveränderungen mit Hilfe von Bioindikatoren (Klima-Biomonitoring) .............7 Dr. -
De Novo Transcriptome of the Non-Saxitoxin Producing Alexandrium Tamutum Reveals New Insights on Harmful Dinoflagellates
marine drugs Article De novo Transcriptome of the Non-saxitoxin Producing Alexandrium tamutum Reveals New Insights on Harmful Dinoflagellates Giorgio Maria Vingiani 1 ,Darta¯ Štalberga¯ 2 , Pasquale De Luca 3 , Adrianna Ianora 1, Daniele De Luca 4 and Chiara Lauritano 1,* 1 Marine Biotechnology Department, Stazione Zoologica Anton Dohrn, Villa Comunale, CAP80121 Napoli, Italy; [email protected] (G.M.V.); [email protected] (A.I.) 2 Faculty of Medicine and Health Sciences, Linköping University, 58183 Linköping, Sweden; [email protected] 3 Research Infrastructure for Marine Biological Resources Department, Stazione Zoologica Anton Dohrn, Villa Comunale, CAP80121 Napoli, Italy; [email protected] 4 Department of Humanities, Università degli Studi Suor Orsola Benincasa, CAP80135 Naples, Italy; [email protected] * Correspondence: [email protected]; Tel.: +081-583-3221 Received: 26 May 2020; Accepted: 20 July 2020; Published: 24 July 2020 Abstract: Many dinoflagellates species, especially of the Alexandrium genus, produce a series of toxins with tremendous impacts on human and environmental health, and tourism economies. Alexandrium tamutum was discovered for the first time in the Gulf of Naples, and it is not known to produce saxitoxins. However, a clone of A. tamutum from the same Gulf showed copepod reproduction impairment and antiproliferative activity. In this study, the full transcriptome of the dinoflagellate A. tamutum is presented in both control and phosphate starvation conditions. RNA-seq approach was used for in silico identification of transcripts that can be involved in the synthesis of toxic compounds. Phosphate starvation was selected because it is known to induce toxin production for other Alexandrium spp. -
Inducible Mixotrophy in the Dinoflagellate Prorocentrum Minimum
The Journal of Published by the International Society of Eukaryotic Microbiology Protistologists Journal of Eukaryotic Microbiology ISSN 1066-5234 ORIGINAL ARTICLE Inducible Mixotrophy in the Dinoflagellate Prorocentrum minimum Matthew D. Johnson Woods Hole Oceanographic Institution, 266 Woods Hole Road, Woods Hole, Massachusetts, 02543 Keywords ABSTRACT Alveolate; cryptophyte; grazing; nutrient starvation; phagotrophic phototroph; stress; Prorocentrum minimum is a neritic dinoflagellate that forms seasonal blooms Teleaulax amphioxeia. and red tides in estuarine ecosystems. While known to be mixotrophic, previ- ous attempts to document feeding on algal prey have yielded low grazing Correspondence rates. In this study, growth and ingestion rates of P. minimum were measured M.D. Johnson, Biology Department, Woods as a function of nitrogen (-N) and phosphorous (-P) starvation. A P. minimum Hole Oceanographic Institution, 266 Woods isolate from Chesapeake Bay was found to ingest cryptophyte prey when in Hole Road, Woods Hole, MA 02543, USA stationary phase and when starved of N or P. Prorocentrum minimum ingested Telephone number: +1(508) 289-2584; two strains of Teleaulax amphioxeia at higher rates than six other cryptophyte FAX number: +1(508) 289-457-2076; species. In all cases -P treatments resulted in the highest grazing. Ingestion e-mail: [email protected] rates of -P cells on T. amphioxeia saturated at ~5 prey per predator per day, while ingestion by -N cells saturated at 1 prey per predator per day. In the Received: 22 August 2014; revised 12 presence of prey, -P treated cells reached a maximum mixotrophic growth rate November 2014; accepted November 12, À1 À1 (lmax) of 0.5 d , while -N cells had a lmax of 0.18 d .