Amathys Lutzi
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Genomic, Transcriptomic, and Proteomic Insights Into Intracellular
Zhou et al. Microbiome (2021) 9:182 https://doi.org/10.1186/s40168-021-01099-6 RESEARCH Open Access Arms race in a cell: genomic, transcriptomic, and proteomic insights into intracellular phage–bacteria interplay in deep-sea snail holobionts Kun Zhou1,2, Ying Xu 2,3*, Rui Zhang4,5* and Pei-Yuan Qian1* Abstract Background: Deep-sea animals in hydrothermal vents often form endosymbioses with chemosynthetic bacteria. Endosymbionts serve essential biochemical and ecological functions, but the prokaryotic viruses (phages) that determine their fate are unknown. Results: We conducted metagenomic analysis of a deep-sea vent snail. We assembled four genome bins for Caudovirales phages that had developed dual endosymbiosis with sulphur-oxidising bacteria (SOB) and methane- oxidising bacteria (MOB). Clustered regularly interspaced short palindromic repeat (CRISPR) spacer mapping, genome comparison, and transcriptomic profiling revealed that phages Bin1, Bin2, and Bin4 infected SOB and MOB. The observation of prophages in the snail endosymbionts and expression of the phage integrase gene suggested the presence of lysogenic infection, and the expression of phage structural protein and lysozyme genes indicated active lytic infection. Furthermore, SOB and MOB appear to employ adaptive CRISPR–Cas systems to target phage DNA. Additional expressed defence systems, such as innate restriction–modification systems and dormancy- inducing toxin–antitoxin systems, may co-function and form multiple lines for anti-viral defence. To counter host defence, phages Bin1, Bin2, and Bin3 appear to have evolved anti-restriction mechanisms and expressed methyltransferase genes that potentially counterbalance host restriction activity. In addition, the high-level expression of the auxiliary metabolic genes narGH, which encode nitrate reductase subunits, may promote ATP production, thereby benefiting phage DNA packaging for replication. -
New Records for the Solenogaster Proneomenia Sluiteri (Mollusca) from Icelandic Waters and Description of Proneomenia Custodiens Sp
vol. 35, no. 2, pp. 291–310, 2014 doi: 10.2478/popore−2014−0012 New records for the solenogaster Proneomenia sluiteri (Mollusca) from Icelandic waters and description of Proneomenia custodiens sp. n. Christiane TODT 1 and Kevin M. KOCOT 2 1 University Museum of Bergen, The Natural History Collections, Postbox 7800, N−5020 Bergen, Norway <[email protected]> 2 Department of Biological Sciences, Auburn University, 101 Rouse Life Sciences, Auburn, Alabama 36849, USA <[email protected]> Abstract: During August–September 2011, scientists aboard the R/V Meteor sampled ma− rine animals around Iceland for the IceAGE project (Icelandic marine Animals: Genetics and Ecology). The last sample was taken at a site known as “The Rose Garden” off north− eastern Iceland and yielded a large number of two species of Proneomenia (Mollusca, Aplacophora, Solenogastres, Cavibelonia, Proneomeniidae). We examined isolated scler− ites, radulae, and histological section series for both species. The first, Proneomenia sluiteri Hubrecht, 1880, was originally described from the Barents Sea. This is the first record of this species in Icelandic waters. However, examination of aplacophoran lots collected dur− ing the earlier BIOICE campaign revealed additional Icelandic localities from which this species was collected previously. The second represents a new species of Proneomenia, which, unlike other known representatives of the genus, broods juveniles in the mantle cav− ity. We provide a formal description, proposing the name Proneomenia custodiens sp. n. Interestingly, the sclerites of brooded juveniles are scales like those found in the putatively plesiomorphic order Pholidoskepia rather than hollow needles like those of the adults of this species. -
Vertical, Lateral and Temporal Structure in Larval Distributions at Hydrothermal Vents
MARINE ECOLOGY PROGRESS SERIES Vol. 293: 1–16, 2005 Published June 2 Mar Ecol Prog Ser Vertical, lateral and temporal structure in larval distributions at hydrothermal vents L. S. Mullineaux1,*, S. W. Mills1, A. K. Sweetman2, A. H. Beaudreau3, 4 5 A. Metaxas , H. L. Hunt 1Woods Hole Oceanographic Institution, MS 34, Woods Hole, Massachusetts 02543, USA 2Max-Planck-Institut für marine Mikrobiologie, Celsiusstraße 1, 28359 Bremen, Germany 3University of Washington, Box 355020, Seattle, Washington 98195, USA 4Dalhousie University, Halifax, Nova Scotia B3H 4J1, Canada 5University of New Brunswick, PO Box 5050, Saint John, New Brunswick E2L 4L5, Canada ABSTRACT: We examined larval abundance patterns near deep-sea hydrothermal vents along the East Pacific Rise to investigate how physical transport processes and larval behavior may interact to influence larval dispersal from, and supply to, vent populations. We characterized vertical and lateral distributions and temporal variation of larvae of vent species using high-volume pumps that recov- ered larvae in good condition (some still alive) and in high numbers (up to 450 individuals sample–1). Moorings supported pumps at heights of 1, 20, and 175 m above the seafloor, and were positioned directly above and at 10s to 100s of meters away from vent communities. Sampling was conducted on 4 cruises between November 1998 and May 2000. Larvae of 22 benthic species, including gastropods, a bivalve, polychaetes, and a crab, were identified unequivocally as vent species, and 15 additional species, or species-groups, comprised larvae of probable vent origin. For most taxa, abundances decreased significantly with increasing height above bottom. When vent sites within the confines of the axial valley were considered, larval abundances were significantly higher on-vent than off, sug- gesting that larvae may be retained within the valley. -
Biodiversity and Trophic Ecology of Hydrothermal Vent Fauna Associated with Tubeworm Assemblages on the Juan De Fuca Ridge
Biogeosciences, 15, 2629–2647, 2018 https://doi.org/10.5194/bg-15-2629-2018 © Author(s) 2018. This work is distributed under the Creative Commons Attribution 4.0 License. Biodiversity and trophic ecology of hydrothermal vent fauna associated with tubeworm assemblages on the Juan de Fuca Ridge Yann Lelièvre1,2, Jozée Sarrazin1, Julien Marticorena1, Gauthier Schaal3, Thomas Day1, Pierre Legendre2, Stéphane Hourdez4,5, and Marjolaine Matabos1 1Ifremer, Centre de Bretagne, REM/EEP, Laboratoire Environnement Profond, 29280 Plouzané, France 2Département de sciences biologiques, Université de Montréal, C.P. 6128, succursale Centre-ville, Montréal, Québec, H3C 3J7, Canada 3Laboratoire des Sciences de l’Environnement Marin (LEMAR), UMR 6539 9 CNRS/UBO/IRD/Ifremer, BP 70, 29280, Plouzané, France 4Sorbonne Université, UMR7144, Station Biologique de Roscoff, 29680 Roscoff, France 5CNRS, UMR7144, Station Biologique de Roscoff, 29680 Roscoff, France Correspondence: Yann Lelièvre ([email protected]) Received: 3 October 2017 – Discussion started: 12 October 2017 Revised: 29 March 2018 – Accepted: 7 April 2018 – Published: 4 May 2018 Abstract. Hydrothermal vent sites along the Juan de Fuca community structuring. Vent food webs did not appear to be Ridge in the north-east Pacific host dense populations of organised through predator–prey relationships. For example, Ridgeia piscesae tubeworms that promote habitat hetero- although trophic structure complexity increased with ecolog- geneity and local diversity. A detailed description of the ical successional stages, showing a higher number of preda- biodiversity and community structure is needed to help un- tors in the last stages, the food web structure itself did not derstand the ecological processes that underlie the distribu- change across assemblages. -
Species Trophic Guild – Nutritional Mode Reference(S) Annelida Polychaeta Siboglinidae Ridgeia Piscesae Symbiotic Jones (1985)*; Southward Et Al
Species Trophic guild – nutritional mode Reference(s) Annelida Polychaeta Siboglinidae Ridgeia piscesae Symbiotic Jones (1985)*; Southward et al. (1995); Bergquist et al. (2007); this study Maldanidae Nicomache venticola Bacterivore – surface deposit feeder or grazer Blake and Hilbig (1990)*; Bergquist et al. (2007); this study Dorvilleidae Ophryotrocha globopalpata Predator Blake and Hilbig (1990)*; Bergquist et al. (2007); this study Orbiniidae Berkeleyia sp. nov. Scavenger/detritivore – suspension feeder Jumars et al. (2015); this study Hesionidae Hesiospina sp. nov.a Predator Bonifácio et al. (2018)*; this study Phyllodocidae Protomystides verenae Predator Blake and Hilbig (1990)*; Bergquist et al. (2007); this study Polynoidae Branchinotogluma tunnicliffeae Predator Pettibone (1988)*; Bergquist et al. (2007); this study Branchinotogluma sp. Predator – Lepidonotopodium piscesae Predator Pettibone (1988)*; Levesque et al. (2006); Bergquist et al. (2007); this study Levensteiniella kincaidi Predator Pettibone (1985)*; Bergquist et al. (2007); this study Sigalionidae Pholoe courtneyae Predator Blake (1995)*; Sweetman et al. (2013) Syllidae Sphaerosyllis ridgensis Predator Blake and Hilbig (1990)*; Bergquist et al. (2007); this study Alvinellidae Paralvinella dela Bacterivore – surface deposit feeder or grazer; suspension feeder Detinova (1988)*; this study Paralvinella palmiformis Bacterivore – surface deposit feeder or grazer; suspension feeder Desbruyères and Laubier (1986*, 1991); Levesque et al. (2003); this study Paralvinella pandorae Bacterivore – surface deposit feeder or grazer; suspension feeder Desbruyères and Laubier (1986*, 1991); Levesque et al. (2003); this study Paralvinella sulfincola Bacterivore – surface deposit feeder or grazer; suspension feeder Tunnicliffe et al. (1993)*; Levesque et al. (2003); this study Ampharetidae Amphisamytha carldarei Scavenger/detritivore – surface deposit feeder or grazer Stiller et al. (2013)*; McHugh and Tunnicliffe (1994); Bergquist et al. -
Reproduction of Gastropods from Vents on the East Pacific Rise and the Mid-Atlantic Ridge
JOBNAME: jsr 27#1 2008 PAGE: 1 OUTPUT: Friday March 14 03:55:15 2008 tsp/jsr/159953/27-1-19 View metadata, citation and similar papers at core.ac.uk brought to you by CORE Journal of Shellfish Research, Vol. 27, No. 1, 107–118, 2008. provided by Woods Hole Open Access Server REPRODUCTION OF GASTROPODS FROM VENTS ON THE EAST PACIFIC RISE AND THE MID-ATLANTIC RIDGE PAUL A. TYLER,1* SOPHIE PENDLEBURY,1 SUSAN W. MILLS,2 LAUREN MULLINEAUX,2 KEVIN J. ECKELBARGER,3 MARIA BAKER1 AND CRAIG M. YOUNG4 1National Oceanography Centre, Southampton, University of Southampton, Southampton SO14 3ZH, United Kingdom; 2Biology Department Woods Hole Oceanographic Institution, Woods Hole Massachusetts 02543; 3Darling Marine Center, University of Maine, 193 Clark’s Cove Road. Walpole, Maine 04573; 4Oregon Institute of Marine Biology, University of Oregon, Charleston, Oregon 97420 ABSTRACT The gametogenic biology is described for seven species of gastropod from hydrothermal vents in the East Pacific and from the Mid-Atlantic Ridge. Species of the limpet genus Lepetodrilus (Family Lepetodrilidae) had a maximum unfertilized oocyte size of <90 mm and there was no evidence of reproductive periodicity or spatial variation in reproductive pattern. Individuals showed early maturity with females undergoing gametogenesis at less than one third maximum body size. There was a power relationship between shell length and fecundity, with a maximum of ;1,800 oocytes being found in one individual, although individual fecundity was usually <1,000. Such an egg size might be indicative of planktotrophic larval development, but there was never any indication of shell growth in larvae from species in this genus. -
New Archaeogastropod Limpets from Hydrothermal Vents New Family Peltospiridae, New Superfamily Peltospiracea
Zoologica Scripta, Vol. 18, No. 1, pp. 49-66,1989 0300-3256/89 $3.00 +.00 Printed in Great Britain Pergamon Press pic 1989 The Norwegian Academy of Science and Letters New archaeogastropod limpets from hydrothermal vents new family Peltospiridae, new superfamily Peltospiracea JAMES H. MCLEAN Accepted 25 February 1988 McLean, J. H. 1989. New archaeogastropod limpets from hydrothermal vents: new family Peltospiridae, new superfamily Peltospiracea.—Zool. Scr. 18:49-66. Seven new species of limpets from hydrothermal vents are described in five new genera in the new family Peltospiridae (new superfamily Peltospiracea). Limpets in this family are known only from the hydrothermal vent community at two sites, near 21°N and 13°N, on the East Pacific Rise. New genera and species are: Peltospira, type species P. operculata from both sites, and P. delicata from 13°N; Nodopelta, type species N. heminoda from both sites, and N. subnoda from 13°N; Rhynchopelta, type species R. concentrica from both sites; Echinopelta, type species E. fistulosa from 21°N; Hirtopelta, type species H. hirta from 13°N. These limpets are associated with the Pompei worm Alvinella, except for Rhynchopelta, which is associated with the vestimentiferan worm Riftia. James H. McLean, Los Angeles County Museum of Natural History, 900 Exposition Blvd, Los Angeles, CA 90007, U.S.A. Introduction and coiled gastropods were illustrated by Turner & Lutz (1984), Turner et al. (1985) and Lutz et al. (1986), who The hydrothermal vent community of the East Pacific has also discussd the potential for larval dispersal in hydro- now been known for a decade, following the first dis thermal vent mollusks. -
The Heart of a Dragon: 3D Anatomical Reconstruction of the 'Scaly-Foot Gastropod'
The heart of a dragon: 3D anatomical reconstruction of the 'scaly-foot gastropod' (Mollusca: Gastropoda: Neomphalina) reveals its extraordinary circulatory system Chen, C., Copley, J. T., Linse, K., Rogers, A. D., & Sigwart, J. D. (2015). The heart of a dragon: 3D anatomical reconstruction of the 'scaly-foot gastropod' (Mollusca: Gastropoda: Neomphalina) reveals its extraordinary circulatory system. Frontiers in zoology, 12(13), [13]. https://doi.org/10.1186/s12983-015-0105-1 Published in: Frontiers in zoology Document Version: Publisher's PDF, also known as Version of record Queen's University Belfast - Research Portal: Link to publication record in Queen's University Belfast Research Portal Publisher rights © 2015 Chen et al. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. General rights Copyright for the publications made accessible via the Queen's University Belfast Research Portal is retained by the author(s) and / or other copyright owners and it is a condition of accessing these publications that users recognise and abide by the legal requirements associated with these rights. Take down policy The Research Portal is Queen's institutional repository that provides access to Queen's research output. Every effort has been made to ensure that content in the Research Portal does not infringe any person's rights, or applicable UK laws. -
A Molecular Phylogeny of the Patellogastropoda (Mollusca: Gastropoda)
^03 Marine Biology (2000) 137: 183-194 ® Spnnger-Verlag 2000 M. G. Harasevvych A. G. McArthur A molecular phylogeny of the Patellogastropoda (Mollusca: Gastropoda) Received: 5 February 1999 /Accepted: 16 May 2000 Abstract Phylogenetic analyses of partiaJ J8S rDNA formia" than between the Patellogastropoda and sequences from species representing all living families of Orthogastropoda. Partial 18S sequences support the the order Patellogastropoda, most other major gastro- inclusion of the family Neolepetopsidae within the su- pod groups (Cocculiniformia, Neritopsma, Vetigastro- perfamily Acmaeoidea, and refute its previously hy- poda, Caenogastropoda, Heterobranchia, but not pothesized position as sister group to the remaining Neomphalina), and two additional classes of the phylum living Patellogastropoda. This region of the Í8S rDNA Mollusca (Cephalopoda, Polyplacophora) confirm that gene diverges at widely differing rates, spanning an order Patellogastropoda comprises a robust clade with high of magnitude among patellogastropod lineages, and statistical support. The sequences are characterized by therefore does not provide meaningful resolution of the the presence of several insertions and deletions that are relationships among higher taxa of patellogastropods. unique to, and ubiquitous among, patellogastropods. Data from one or more genes that evolve more uni- However, this portion of the 18S gene is insufficiently formly and more rapidly than the ISSrDNA gene informative to provide robust support for the mono- (possibly one or more -
The Limpet Form in Gastropods: Evolution, Distribution, and Implications for the Comparative Study of History
UC Davis UC Davis Previously Published Works Title The limpet form in gastropods: Evolution, distribution, and implications for the comparative study of history Permalink https://escholarship.org/uc/item/8p93f8z8 Journal Biological Journal of the Linnean Society, 120(1) ISSN 0024-4066 Author Vermeij, GJ Publication Date 2017 DOI 10.1111/bij.12883 Peer reviewed eScholarship.org Powered by the California Digital Library University of California Biological Journal of the Linnean Society, 2016, , – . With 1 figure. Biological Journal of the Linnean Society, 2017, 120 , 22–37. With 1 figures 2 G. J. VERMEIJ A B The limpet form in gastropods: evolution, distribution, and implications for the comparative study of history GEERAT J. VERMEIJ* Department of Earth and Planetary Science, University of California, Davis, Davis, CA,USA C D Received 19 April 2015; revised 30 June 2016; accepted for publication 30 June 2016 The limpet form – a cap-shaped or slipper-shaped univalved shell – convergently evolved in many gastropod lineages, but questions remain about when, how often, and under which circumstances it originated. Except for some predation-resistant limpets in shallow-water marine environments, limpets are not well adapted to intense competition and predation, leading to the prediction that they originated in refugial habitats where exposure to predators and competitors is low. A survey of fossil and living limpets indicates that the limpet form evolved independently in at least 54 lineages, with particularly frequent origins in early-diverging gastropod clades, as well as in Neritimorpha and Heterobranchia. There are at least 14 origins in freshwater and 10 in the deep sea, E F with known times ranging from the Cambrian to the Neogene. -
University of Southampton Research Repository Eprints Soton
University of Southampton Research Repository ePrints Soton Copyright © and Moral Rights for this thesis are retained by the author and/or other copyright owners. A copy can be downloaded for personal non-commercial research or study, without prior permission or charge. This thesis cannot be reproduced or quoted extensively from without first obtaining permission in writing from the copyright holder/s. The content must not be changed in any way or sold commercially in any format or medium without the formal permission of the copyright holders. When referring to this work, full bibliographic details including the author, title, awarding institution and date of the thesis must be given e.g. AUTHOR (year of submission) "Full thesis title", University of Southampton, name of the University School or Department, PhD Thesis, pagination http://eprints.soton.ac.uk UNIVERSITY OF SOUTHAMPTON FACULTY OF NATURAL AND ENVIRONMENTAL SCIENCES Ocean and Earth Science Volume 1 of 1 Life-history biology and biogeography of invertebrates in deep-sea chemosynthetic environments by Verity Nye Thesis for the degree of Doctor of Philosophy December 2013 UNIVERSITY OF SOUTHAMPTON ABSTRACT FACULTY OF NATURAL AND ENVIRONMENTAL SCIENCES Ocean and Earth Science Thesis for the degree of Doctor of Philosophy LIFE-HISTORY BIOLOGY AND BIOGEOGRAPHY OF INVERTEBRATES IN DEEP-SEA CHEMOSYNTHETIC ENVIRONMENTS Verity Nye Globally-distributed, insular and ephemeral deep-sea hydrothermal vents with their endemic faunas provide ‘natural laboratories’ for studying the processes that shape global patterns of marine life. The continuing discovery of hydrothermal vents and their faunal assemblages has yielded hundreds of new species and revealed several biogeographic provinces, distinguished by differences in the taxonomic composition of their assemblages. -
Hydrothermal Vent Periphery Invertebrate Community Habitat Preferences of the Lau Basin
California State University, Monterey Bay Digital Commons @ CSUMB Capstone Projects and Master's Theses Capstone Projects and Master's Theses Summer 2020 Hydrothermal Vent Periphery Invertebrate Community Habitat Preferences of the Lau Basin Kenji Jordi Soto California State University, Monterey Bay Follow this and additional works at: https://digitalcommons.csumb.edu/caps_thes_all Recommended Citation Soto, Kenji Jordi, "Hydrothermal Vent Periphery Invertebrate Community Habitat Preferences of the Lau Basin" (2020). Capstone Projects and Master's Theses. 892. https://digitalcommons.csumb.edu/caps_thes_all/892 This Master's Thesis (Open Access) is brought to you for free and open access by the Capstone Projects and Master's Theses at Digital Commons @ CSUMB. It has been accepted for inclusion in Capstone Projects and Master's Theses by an authorized administrator of Digital Commons @ CSUMB. For more information, please contact [email protected]. HYDROTEHRMAL VENT PERIPHERY INVERTEBRATE COMMUNITY HABITAT PREFERENCES OF THE LAU BASIN _______________ A Thesis Presented to the Faculty of Moss Landing Marine Laboratories California State University Monterey Bay _______________ In Partial Fulfillment of the Requirements for the Degree Master of Science in Marine Science _______________ by Kenji Jordi Soto Spring 2020 CALIFORNIA STATE UNIVERSITY MONTEREY BAY The Undersigned Faculty Committee Approves the Thesis of Kenji Jordi Soto: HYDROTHERMAL VENT PERIPHERY INVERTEBRATE COMMUNITY HABITAT PREFERENCES OF THE LAU BASIN _____________________________________________