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Population Biology of Switchgrass Rust
POPULATION BIOLOGY OF SWITCHGRASS RUST (Puccinia emaculata Schw.) By GABRIELA KARINA ORQUERA DELGADO Bachelor of Science in Biotechnology Escuela Politécnica del Ejército (ESPE) Quito, Ecuador 2011 Submitted to the Faculty of the Graduate College of the Oklahoma State University in partial fulfillment of the requirements for the Degree of MASTER OF SCIENCE July, 2014 POPULATION BIOLOGY OF SWITCHGRASS RUST (Puccinia emaculata Schw.) Thesis Approved: Dr. Stephen Marek Thesis Adviser Dr. Carla Garzon Dr. Robert M. Hunger ii ACKNOWLEDGEMENTS For their guidance and support, I express sincere gratitude to my supervisor, Dr. Marek, who has supported thought my thesis with his patience and knowledge whilst allowing me the room to work in my own way. One simply could not wish for a better or friendlier supervisor. I give special thanks to M.S. Maxwell Gilley (Mississippi State University), Dr. Bing Yang (Iowa State University), Arvid Boe (South Dakota State University) and Dr. Bingyu Zhao (Virginia State), for providing switchgrass rust samples used in this study and M.S. Andrea Payne, for her assistance during my writing process. I would like to recognize Patricia Garrido and Francisco Flores for their guidance, assistance, and friendship. To my family and friends for being always the support and energy I needed to follow my dreams. iii Acknowledgements reflect the views of the author and are not endorsed by committee members or Oklahoma State University. Name: GABRIELA KARINA ORQUERA DELGADO Date of Degree: JULY, 2014 Title of Study: POPULATION BIOLOGY OF SWITCHGRASS RUST (Puccinia emaculata Schw.) Major Field: ENTOMOLOGY AND PLANT PATHOLOGY Abstract: Switchgrass (Panicum virgatum L.) is a perennial warm season grass native to a large portion of North America. -
Current Status of Research on Rust Fungi (Pucciniales) in India
Asian Journal of Mycology 4(1): 40–80 (2021) ISSN 2651-1339 www.asianjournalofmycology.org Article Doi 10.5943/ajom/4/1/5 Current status of research on Rust fungi (Pucciniales) in India Gautam AK1, Avasthi S2, Verma RK3, Devadatha B 4, Sushma5, Ranadive KR 6, Bhadauria R2, Prasher IB7 and Kashyap PL8 1School of Agriculture, Abhilashi University, Mandi, Himachal Pradesh, India 2School of Studies in Botany, Jiwaji University, Gwalior, Madhya Pradesh, India 3Department of Plant Pathology, Punjab Agricultural University, Ludhiana, Punjab, India 4 Fungal Biotechnology Lab, Department of Biotechnology, School of Life Sciences, Pondicherry University, Kalapet, Pondicherry, India 5Department of Biosciences, Chandigarh University Gharuan, Punjab, India 6Department of Botany, P.D.E.A.’s Annasaheb Magar Mahavidyalaya, Mahadevnagar, Hadapsar, Pune, Maharashtra, India 7Department of Botany, Mycology and Plant Pathology Laboratory, Panjab University Chandigarh, India 8ICAR-Indian Institute of Wheat and Barley Research (IIWBR), Karnal, Haryana, India Gautam AK, Avasthi S, Verma RK, Devadatha B, Sushma, Ranadive KR, Bhadauria R, Prasher IB, Kashyap PL 2021 – Current status of research on Rust fungi (Pucciniales) in India. Asian Journal of Mycology 4(1), 40–80, Doi 10.5943/ajom/4/1/5 Abstract Rust fungi show unique systematic characteristics among all fungal groups. A single species of rust fungi may produce up to five morphologically and cytologically distinct spore-producing structures thereby attracting the interest of mycologist for centuries. In India, the research on rust fungi started with the arrival of foreign visiting scientists or emigrant experts, mainly from Britain who collected fungi and sent specimens to European laboratories for identification. Later on, a number of mycologists from India and abroad studied Indian rust fungi and contributed a lot to knowledge of the rusts to the Indian Mycobiota. -
Master Thesis
Swedish University of Agricultural Sciences Faculty of Natural Resources and Agricultural Sciences Department of Forest Mycology and Plant Pathology Uppsala 2011 Taxonomic and phylogenetic study of rust fungi forming aecia on Berberis spp. in Sweden Iuliia Kyiashchenko Master‟ thesis, 30 hec Ecology Master‟s programme SLU, Swedish University of Agricultural Sciences Faculty of Natural Resources and Agricultural Sciences Department of Forest Mycology and Plant Pathology Iuliia Kyiashchenko Taxonomic and phylogenetic study of rust fungi forming aecia on Berberis spp. in Sweden Uppsala 2011 Supervisors: Prof. Jonathan Yuen, Dept. of Forest Mycology and Plant Pathology Anna Berlin, Dept. of Forest Mycology and Plant Pathology Examiner: Anders Dahlberg, Dept. of Forest Mycology and Plant Pathology Credits: 30 hp Level: E Subject: Biology Course title: Independent project in Biology Course code: EX0565 Online publication: http://stud.epsilon.slu.se Key words: rust fungi, aecia, aeciospores, morphology, barberry, DNA sequence analysis, phylogenetic analysis Front-page picture: Barberry bush infected by Puccinia spp., outside Trosa, Sweden. Photo: Anna Berlin 2 3 Content 1 Introduction…………………………………………………………………………. 6 1.1 Life cycle…………………………………………………………………………….. 7 1.2 Hyphae and haustoria………………………………………………………………... 9 1.3 Rust taxonomy……………………………………………………………………….. 10 1.3.1 Formae specialis………………………………………………………………. 10 1.4 Economic importance………………………………………………………………... 10 2 Materials and methods……………………………………………………………... 13 2.1 Rust and barberry -
BIOLOGICAL CONTROL of WEEDS a World Catalogue of Agents and Their Target Weeds Fifth Edition Rachel L
United States Department of Agriculture BIOLOGICAL CONTROL OF WEEDS A WORLD CATALOGUE OF AGENTS AND THEIR TARGET WEEDS FIFTH EDITION Rachel L. Winston, Mark Schwarzländer, Hariet L. Hinz, Michael D. Day, Matthew J.W. Cock, and Mic H. Julien; with assistance from Michelle Lewis Forest Forest Health Technology University of Idaho FHTET-2014-04 Service Enterprise Team Extension December 2014 The Forest Health Technology Enterprise Team (FHTET) was created in 1995 by the Deputy Chief for State and Private Forestry, Forest Service, U.S. Department of Agriculture, to develop and deliver technologies to protect and improve the health of American forests. This book was published by FHTET as part of the technology transfer series. http://www.fs.fed.us/foresthealth/technology/ Winston, R.L., M. Schwarzländer, H.L. Hinz, M.D. Day, M.J.W. Cock and M.H. Julien, Eds. 2014. Biological Control of Weeds: A World Catalogue of Agents and Their Target Weeds, 5th edition. USDA Forest Service, Forest Health Technology Enterprise Team, Morgantown, West Virginia. FHTET-2014-04. 838 pp. Photo Credits Front Cover: Tambali Lagoon, Sepik River, Papua New Guinea before (left) and after (right) release of Neochetina spp. (center). Photos (left and right) by Mic Julien and (center) by Michael Day, all via the Commonwealth Scientific and Industrial Research Organisation (CSIRO). Back Cover: Nomorodu, New Ireland, Papua New Guinea before (left) and after (right) release of Cecidochares connexa. Photos (left and right) by Michael Day, Queensland Department of Agriculture Fisheries and Forestry (DAFF), and (center) by Colin Wilson, Kangaroo Island Natural Resources Management Board, South Australia. -
Species Richness, Taxonomy and Peculiarities of the Neotropical Rust Fungi Are They More Diverse in the Neotropics?
Research Collection Journal Article Species richness, taxonomy and peculiarities of the neotropical rust fungi Are they more diverse in the Neotropics? Author(s): Berndt, Reinhard Publication Date: 2012-08 Permanent Link: https://doi.org/10.3929/ethz-b-000055339 Originally published in: Biodiversity and Conservation 21(9), http://doi.org/10.1007/s10531-011-0220-z Rights / License: In Copyright - Non-Commercial Use Permitted This page was generated automatically upon download from the ETH Zurich Research Collection. For more information please consult the Terms of use. ETH Library Biodivers Conserv (2012) 21:2299–2322 DOI 10.1007/s10531-011-0220-z ORIGINAL PAPER Species richness, taxonomy and peculiarities of the neotropical rust fungi: are they more diverse in the Neotropics? Reinhard Berndt Received: 27 July 2011 / Accepted: 21 December 2011 / Published online: 22 January 2012 Ó Springer Science+Business Media B.V. 2012 Abstract The species richness of rust fungi (Pucciniales or Uredinales) in the neotropics is reviewed. Species numbers are presented for all neotropical countries and rust-plant- ratios calculated. It is discussed whether the ratio for a given region can be explained by the species richness of vascular plants alone or whether it is caused by additional factors. In the first case, ratios should apply globally and vary only slightly; in the second case, more diverging ratios are expected. Observed ratios ranged between 1:16 and 1:124 in the neotropics. The large differences are certainly influenced by unequal levels of investiga- tion, rendering interpretation difficult. Differences seem also to be influenced by the tax- onomic composition of floras regarding the percentage of host families or genera bearing different numbers of rust species. -
Sequencing Abstracts Msa Annual Meeting Berkeley, California 7-11 August 2016
M S A 2 0 1 6 SEQUENCING ABSTRACTS MSA ANNUAL MEETING BERKELEY, CALIFORNIA 7-11 AUGUST 2016 MSA Special Addresses Presidential Address Kerry O’Donnell MSA President 2015–2016 Who do you love? Karling Lecture Arturo Casadevall Johns Hopkins Bloomberg School of Public Health Thoughts on virulence, melanin and the rise of mammals Workshops Nomenclature UNITE Student Workshop on Professional Development Abstracts for Symposia, Contributed formats for downloading and using locally or in a Talks, and Poster Sessions arranged by range of applications (e.g. QIIME, Mothur, SCATA). 4. Analysis tools - UNITE provides variety of analysis last name of primary author. Presenting tools including, for example, massBLASTer for author in *bold. blasting hundreds of sequences in one batch, ITSx for detecting and extracting ITS1 and ITS2 regions of ITS 1. UNITE - Unified system for the DNA based sequences from environmental communities, or fungal species linked to the classification ATOSH for assigning your unknown sequences to *Abarenkov, Kessy (1), Kõljalg, Urmas (1,2), SHs. 5. Custom search functions and unique views to Nilsson, R. Henrik (3), Taylor, Andy F. S. (4), fungal barcode sequences - these include extended Larsson, Karl-Hnerik (5), UNITE Community (6) search filters (e.g. source, locality, habitat, traits) for 1.Natural History Museum, University of Tartu, sequences and SHs, interactive maps and graphs, and Vanemuise 46, Tartu 51014; 2.Institute of Ecology views to the largest unidentified sequence clusters and Earth Sciences, University of Tartu, Lai 40, Tartu formed by sequences from multiple independent 51005, Estonia; 3.Department of Biological and ecological studies, and for which no metadata Environmental Sciences, University of Gothenburg, currently exists. -
Gljive Iz Reda Pucciniales – Morfologija, Sistematika, Ekologija I Patogenost
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Croatian Digital Thesis Repository SVEUČILIŠTE U ZAGREBU PRIRODOSLOVNO – MATEMATIČKI FAKULTET BIOLOŠKI ODSJEK Gljive iz reda Pucciniales – morfologija, sistematika, ekologija i patogenost Fungi from order Pucciniales – morphology, systematics, ecology and pathogenicity SEMINARSKI RAD Jelena Radman Preddiplomski studij biologije Mentor: Prof. dr. sc. Tihomir Miličević SADRŽAJ 1. UVOD............................................................................................................................................... 2 2. SISTEMATIKA ................................................................................................................................... 3 3. MORFOLOGIJA................................................................................................................................. 5 3.1. GRAĐA FRUKTIFIKACIJSKIH TIJELA I SPORE ............................................................................. 5 3.1.1. Spermatogoniji (piknidiji) sa spermacijama (piknidiosporama) ................................... 5 3.1.2. Ecidiosorusi (ecidiji) s ecidiosporama ............................................................................ 6 3.1.3. Uredosorusi (urediji) s uredosporama ........................................................................... 7 3.1.4. Teliosorusi (teliji) s teliosporama................................................................................... 7 3.1.5. Bazidiji i bazidiospore.................................................................................................... -
Notes, Outline and Divergence Times of Basidiomycota
Fungal Diversity (2019) 99:105–367 https://doi.org/10.1007/s13225-019-00435-4 (0123456789().,-volV)(0123456789().,- volV) Notes, outline and divergence times of Basidiomycota 1,2,3 1,4 3 5 5 Mao-Qiang He • Rui-Lin Zhao • Kevin D. Hyde • Dominik Begerow • Martin Kemler • 6 7 8,9 10 11 Andrey Yurkov • Eric H. C. McKenzie • Olivier Raspe´ • Makoto Kakishima • Santiago Sa´nchez-Ramı´rez • 12 13 14 15 16 Else C. Vellinga • Roy Halling • Viktor Papp • Ivan V. Zmitrovich • Bart Buyck • 8,9 3 17 18 1 Damien Ertz • Nalin N. Wijayawardene • Bao-Kai Cui • Nathan Schoutteten • Xin-Zhan Liu • 19 1 1,3 1 1 1 Tai-Hui Li • Yi-Jian Yao • Xin-Yu Zhu • An-Qi Liu • Guo-Jie Li • Ming-Zhe Zhang • 1 1 20 21,22 23 Zhi-Lin Ling • Bin Cao • Vladimı´r Antonı´n • Teun Boekhout • Bianca Denise Barbosa da Silva • 18 24 25 26 27 Eske De Crop • Cony Decock • Ba´lint Dima • Arun Kumar Dutta • Jack W. Fell • 28 29 30 31 Jo´ zsef Geml • Masoomeh Ghobad-Nejhad • Admir J. Giachini • Tatiana B. Gibertoni • 32 33,34 17 35 Sergio P. Gorjo´ n • Danny Haelewaters • Shuang-Hui He • Brendan P. Hodkinson • 36 37 38 39 40,41 Egon Horak • Tamotsu Hoshino • Alfredo Justo • Young Woon Lim • Nelson Menolli Jr. • 42 43,44 45 46 47 Armin Mesˇic´ • Jean-Marc Moncalvo • Gregory M. Mueller • La´szlo´ G. Nagy • R. Henrik Nilsson • 48 48 49 2 Machiel Noordeloos • Jorinde Nuytinck • Takamichi Orihara • Cheewangkoon Ratchadawan • 50,51 52 53 Mario Rajchenberg • Alexandre G. -
Host Jumps Shaped the Diversity of Extant Rust Fungi (Pucciniales)
Research Host jumps shaped the diversity of extant rust fungi (Pucciniales) Alistair R. McTaggart1, Roger G. Shivas2, Magriet A. van der Nest3, Jolanda Roux4, Brenda D. Wingfield3 and Michael J. Wingfield1 1Department of Microbiology and Plant Pathology, Tree Protection Co-operative Programme (TPCP), Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Private Bag X20, Pretoria 0028, South Africa; 2Department of Agriculture and Forestry, Queensland Plant Pathology Herbarium, GPO Box 267, Brisbane, Qld 4001, Australia; 3Department of Genetics, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Private bag X20, Pretoria 0028, South Africa; 4Department of Plant Sciences, Tree Protection Co-operative Programme (TPCP), Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Private Bag X20, Pretoria 0028, South Africa Summary Author for correspondence: The aim of this study was to determine the evolutionary time line for rust fungi and date Alistair R. McTaggart key speciation events using a molecular clock. Evidence is provided that supports a contempo- Tel: +2712 420 6714 rary view for a recent origin of rust fungi, with a common ancestor on a flowering plant. Email: [email protected] Divergence times for > 20 genera of rust fungi were studied with Bayesian evolutionary Received: 8 July 2015 analyses. A relaxed molecular clock was applied to ribosomal and mitochondrial genes, cali- Accepted: 26 August 2015 brated against estimated divergence times for the hosts of rust fungi, such as Acacia (Fabaceae), angiosperms and the cupressophytes. New Phytologist (2016) 209: 1149–1158 Results showed that rust fungi shared a most recent common ancestor with a mean age doi: 10.1111/nph.13686 between 113 and 115 million yr. -
Teak Rust Olivea Tectona : Occurrence, Epidemiology, Its Chemical Control in Vitro and Recation of Teak Clones and Provenances
Leaflet No. 10/2000 Government of the Union of Myanmar Ministry of Forestry Forest Department Teak Rust Olivea Tectona : Occurrence, Epidemiology, Its Chemical Control In Vitro and Recation of Teak Clones and Provenances Daw Wai Wai Than, B.Sc. ( Zoo), M.Sc, ( Thesis ) Forest Pathology Assistant Research Officer Forest Research Institute April, 2000 i Acknowledgements I am very much grateful to U Saw Yan Aung C Doo, former Rector of the Institute of Forestry, Dr. Yi Yi Myint, Professor, Plant Pathology, Yezin Agricultural University and U Maung Maung Myint, Lecturer, Plant Pathology of the YAU for their guidance and support in preparation of this paper. ii uGGseff;oHHacs;rSSKdd Olivea tectinae: a&m*gjzpffay;rSSK? ysHHhhESSHHYYrSSK ? a&m*gumuGG,ffEddkkiffrSSKuddkk "gwkkaA'ypöönff;rsm;jziffhh "gwffcGGJJceff;twGGiff; prff;oyffjciff;ESSiffhh usGGeff; Clones ESSiffhh a'orsddK;wddkkYY&*gtay: wkkHHYYjyeffrSSKrsm;uddkk avhhvmjciff; a':a0a0oef; odyÜHbGJY ( owÅaA' )? r[modyÜH ( usrf;jyK ) opfawma&m*gaA' vufaxmufokawoet&m&Sd? opfawmokawoeXme? a&qif; pmwrf;tusOf;csKyf þpmwrf;wGif Olivea tectonae aMumifhjzpfaom uRef;&GufoHacs;rSdKa&m*gudk avhvm xm;ygonf/ ylíajcmufaoGYaom &moDOwktajcaeonf a&m*gjyif;xefrSKudk jzpfay: aponf/ a'o (5)rsdK;rS þa&m*gudk avhvmí a&m*gvu©Pm? &kyfoGifaA'wdkhudk ESdKif;,SOf xm;ygonf/ a&m*gxdk;oGif;í jzpfay:vmaom vu©Pmonf rlvvu©PmESifh wlnDaMumif; awGY&ygonf/ a&m*gonf tylcsdef 22 - 26°C ESifh tarSmifxJwGif ydkí aygufEdkifpGrf; &Sdygonf/ rSdKowfaq; (5)rsdK;\ a&m*gtay: [efYwm;EdkifrSKudk avhvm&m tcsdKY rSdKowfaq; wdkYonf tcsdKYaomjyif;tm;ü xda&mufpGm [efYwm;aMumif; awGY&ygonf/ cHEdkif&nf &Sdaom uRef;rsdK; rsm;a&G;cs,fjcif;udk ueOD;avhvmxm;&m xyfrHí avhvm okawoejyK&ef vdktyfygonf/ iii Teak Rust Olivea Tectonae : Occurrence, Epidemiology, Its Chemical Control In Vitro and Reaction of Teak Clones and Provenances Daw Wai Wai Than B.Sc. -
An Overview of the Higher Level Classification of Pucciniomycotina Based on Combined Analyses of Nuclear Large and Small Subunit Rdna Sequences
Mycologia, 98(6), 2006, pp. 896–905. # 2006 by The Mycological Society of America, Lawrence, KS 66044-8897 An overview of the higher level classification of Pucciniomycotina based on combined analyses of nuclear large and small subunit rDNA sequences M. Catherine Aime1 subphyla of Basidiomycota. More than 8000 species of USDA-ARS, Systematic Botany and Mycology Lab, Pucciniomycotina have been described including Beltsville, Maryland 20705 putative saprotrophs and parasites of plants, animals P. Brandon Matheny and fungi. The overwhelming majority of these Biology Department, Clark University, Worcester, (,90%) belong to a single order of obligate plant Massachusetts 01610 pathogens, the Pucciniales (5Uredinales), or rust fungi. We have assembled a dataset of previously Daniel A. Henk published and newly generated sequence data from USDA-ARS, Systematic Botany and Mycology Lab, Beltsville, Maryland 20705 two nuclear rDNA genes (large subunit and small subunit) including exemplars from all known major Elizabeth M. Frieders groups in order to test hypotheses about evolutionary Department of Biology, University of Wisconsin, relationships among the Pucciniomycotina. The Platteville, Wisconsin 53818 utility of combining nuc-lsu sequences spanning the R. Henrik Nilsson entire D1-D3 region with complete nuc-ssu sequences Go¨teborg University, Department of Plant and for resolution and support of nodes is discussed. Our Environmental Sciences, Go¨teborg, Sweden study confirms Pucciniomycotina as a monophyletic Meike Piepenbring group of Basidiomycota. In total our results support J.W. Goethe-Universita¨t Frankfurt, Department of eight major clades ranked as classes (Agaricostilbo- Mycology, Frankfurt, Germany mycetes, Atractiellomycetes, Classiculomycetes, Cryp- tomycocolacomycetes, Cystobasidiomycetes, Microbo- David J. McLaughlin tryomycetes, Mixiomycetes and Pucciniomycetes) and Department of Plant Biology, University of Minnesota, St Paul, Minnesota 55108 18 orders. -
Biological Control of Weeds in the 22 Pacific Island Countries and Territories: Current Status and Future Prospects
A peer-reviewed open-access journal NeoBiota 30: 167–192Biological (2016) control of weeds in the 22 Pacific island countries and territories... 167 doi: 10.3897/neobiota.30.7113 REVIEW ARTICLE NeoBiota http://neobiota.pensoft.net Advancing research on alien species and biological invasions Biological control of weeds in the 22 Pacific island countries and territories: current status and future prospects Michael D. Day1, Rachel L. Winston2 1 Department of Agriculture and Fisheries, Ecosciences Precinct, GPO Box 267, Brisbane, Qld 4001 Australia 2 MIA Consulting, 316 N. Hansen Ave., Shelley, ID 83274 USA Corresponding author: Michael D. Day ([email protected]) Academic editor: C. Daehler | Received 6 November 2015 | Accepted 28 March 2016 | Published 23 June 2016 Citation: Day MD, Winston RL (2016) Biological control of weeds in the 22 Pacific island countries and territories: current status and future prospects. In: Daehler CC, van Kleunen M, Pyšek P, Richardson DM (Eds) Proceedings of 13th International EMAPi conference, Waikoloa, Hawaii. NeoBiota 30: 167–192. doi: 10.3897/neobiota.30.7113 Abstract Biological control of introduced weeds in the 22 Pacific island countries and territories (PICTs) began in 1911, with the lantana seed-feeding fly introduced into Fiji and New Caledonia from Hawaii. To date, a to- tal of 62 agents have been deliberately introduced into the PICTs to control 21 weed species in 17 countries. A further two agents have spread naturally into the region. The general impact of the 36 biocontrol agents now established in the PICTs ranges from none to complete control of their target weed(s).