Compsopogon Caeruleus, a New Record of Rhodophyta for Algal Flora of Iran
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Supplementary Material
Supplementary Material Algae 2016, 31(4): 303-315 https://doi.org/10.4490/algae.2016.31.10.22 Open Access Supplementary Table S1. Specific primer sequences of different molecular markers used in this study Region Primer name Primer sequence Reference SSU g01 CACCTGGTTGATCCTGCCAG Rintoul et al. (1999) g07 AGCTTGATCCTTCTGCAGGTTCACCTAC c18s5 GAATTGCCGCTTGTGGTGAA This study c18s3 ACGACTTCTCCTTCCTCTAAACG rbcL Comp1 GAATCTTCTACAGCAACTTGGAC Rintoul et al. (1999) Comp2 GCATCTCTTATTATTTGAGGACC psbA psbAF ATGACTGCTACTTTAGAAAGACG Yoon et al. (2002) psbAR2 TCATGCATWACTTCCATACCTA UPA p23SrV-f1 GGACAGAAAGACCCTATGAA Sherwood and Presting (2007) p23SrV-r1 TCAGCCTGTTATCCCTAGAG COI Ga2F1 TCAACAAATCATAAAGATATTGG Müller et al. (2001) Ga2R1 ACTTCTGGATGTCCAAAAAAYCA SSU, small subunit rDNA; rbcL, ribulose-1,5-bisphosphate carboxylase-oxygenase large-subunit gene; psbA, photosystem II reaction center protein D1; UPA, 23S ribosomal RNA gene; COI, cytochrome c oxidase subunit I. Supplementary Table S2. Specimen information of sequences downloaded from the GenBank database Taxon Distribution Morphology type rbcL COI SSU Reference Compsopogon caeruleus Australia Caeruleus JX028148 JX028189 AY617150 West et al. (2005), (Balbis ex C. Agardh) Necchi et al. (2013) Montagne AT Compsopogon caeruleus Australia Caeruleus AF460220 - - West et al. (2005) AU-W Compsopogon caeruleus Brazil Caeruleus JX028149 - - Necchi et al. (2013) BR-CO Compsopogon caeruleus Brazil Leptoclados JX028165 JX028184 JX511996 Necchi et al. (2013) BR-CI Compsopogon caeruleus Brazil Caeruleus JX028150 JX028172 JX511997 Necchi et al. (2013) BR-ES3 Compsopogon caeruleus Brazil Caeruleus JX028151 JX028173 JX511998 Necchi et al. (2013) BR-ES6 Compsopogon caeruleus Brazil Caeruleus JX028152 JX028174 - Necchi et al. (2013) BR-ES7 Compsopogon caeruleus Brazil Caeruleus JX028153 JX028175 JX511999 Necchi et al. (2013) BR-ES10 Compsopogon caeruleus Brazil Caeruleus JX028154 JX028176 JX512000 Necchi et al. -
Evolutionary History of the Monospecificcompsopogon Genus (Compsopogonales, Rhodophyta)
Research Article Algae 2016, 31(4): 303-315 https://doi.org/10.4490/algae.2016.31.10.22 Open Access Evolutionary history of the monospecific Compsopogon genus (Compsopogonales, Rhodophyta) Fangru Nan, Jia Feng, Junping Lv, Qi Liu and Shulian Xie* School of Life Science, Shanxi University, Taiyuan 030006, China Compsopogon specimens collected in China were examined based on morphology and DNA sequences. Five molecu- lar markers from different genome compartments including rbcL, COI, 18S rDNA, psbA, and UPA were identified and used to construct a phylogenetic relationship. Phylogenetic analyses indicated that two different morphological types from China clustered into an independent clade with Compsopogon specimens when compared to other global samples. The Compsopogon clade exhibited robust support values, revealing the affiliation of the samples toCompsopogon cae- ruleus. Although the samples were distributed in a close geographical area, unexpected sequence divergences between the Chinese samples implied that they were introduced by different dispersal events and from varied origins. It was speculated that Compsopogon originated in North America, a portion of the Laurentia landmass situated in the Rodinia supercontinent at approximately 573.89-1,701.50 million years ago during the Proterozoic era. Although Compsopogon had evolved for a rather long time, genetic conservation had limited its variability and rate of evolution, resulting in the current monospecific global distribution. Additional global specimens and sequence information were required to in- crease our understanding of the evolutionary history of this ancient red algal lineage. Key Words: Compsopogon; divergence time; geographic origin; molecular analysis; morphology; phylogenetic relationship INTRODUCTION Compsopogon Montagne 1846 is a typical Rhodophyta tics are widely variable both within and among popula- algal genus that inhabits freshwater and is globally dis- tions and with different environmental factors (Necchi et tributed (Kumanoa 2002). -
Freshwater Algae in Britain and Ireland - Bibliography
Freshwater algae in Britain and Ireland - Bibliography Floras, monographs, articles with records and environmental information, together with papers dealing with taxonomic/nomenclatural changes since 2003 (previous update of ‘Coded List’) as well as those helpful for identification purposes. Theses are listed only where available online and include unpublished information. Useful websites are listed at the end of the bibliography. Further links to relevant information (catalogues, websites, photocatalogues) can be found on the site managed by the British Phycological Society (http://www.brphycsoc.org/links.lasso). Abbas A, Godward MBE (1964) Cytology in relation to taxonomy in Chaetophorales. Journal of the Linnean Society, Botany 58: 499–597. Abbott J, Emsley F, Hick T, Stubbins J, Turner WB, West W (1886) Contributions to a fauna and flora of West Yorkshire: algae (exclusive of Diatomaceae). Transactions of the Leeds Naturalists' Club and Scientific Association 1: 69–78, pl.1. Acton E (1909) Coccomyxa subellipsoidea, a new member of the Palmellaceae. Annals of Botany 23: 537–573. Acton E (1916a) On the structure and origin of Cladophora-balls. New Phytologist 15: 1–10. Acton E (1916b) On a new penetrating alga. New Phytologist 15: 97–102. Acton E (1916c) Studies on the nuclear division in desmids. 1. Hyalotheca dissiliens (Smith) Bréb. Annals of Botany 30: 379–382. Adams J (1908) A synopsis of Irish algae, freshwater and marine. Proceedings of the Royal Irish Academy 27B: 11–60. Ahmadjian V (1967) A guide to the algae occurring as lichen symbionts: isolation, culture, cultural physiology and identification. Phycologia 6: 127–166 Allanson BR (1973) The fine structure of the periphyton of Chara sp. -
Compsopogonophyceae, Rhodophyta): Pseudoerythrocladia and Madagascaria
Note Algae 2010, 25(1): 11-15 DOI: 10.4490/algae.2010.25.1.011 pISSN: 1226-2617 eISSN: 2093-0860 Open Access Ultrastructural observations of vegetative cells of two new genera in the Erythropeltidales (Compsopogonophyceae, Rhodophyta): Pseudoerythrocladia and Madagascaria Joseph L. Scott1, Evguenia Orlova1 and John A. West2,* 1Department of Biology, College of William and Mary, Williamsburg, VA 23187, USA 2School of Botany, University of Melbourne, Parkville, Victoria 3010, Australia Received 15 November 2009, Accepted 5 February 2010 Two new genera of red algae, Madagascaria erythrocladioides West et Zuccarello and Pseudoerythrocladia kornmannii West et Kikuchi (Erythropeltidales, Compsopogonophyceae, Rhodophyta), were previously described using molecular analysis and confocal microscopy of isolates in laboratory culture. We examined the ultrastructure of both genera to compare with ultrastructure of other members of the class Compsopogonophyceae. Both genera had Golgi bodies not associated with mitochondria and chloroplasts with a peripheral encircling thylakoid similar to all other members of the class studied thus far. Confocal autofluorescence images showed that Madagascaria has a single round central pyrenoid while Pseudoerythrocladia has no pyrenoid. Our electron microscopic work confirms these initial observations. Tables and keys are presented that assist in interpreting cellular details of genera in the class Compsopogonophyceae. Key Words: chloroplasts; Compsopogononophyceae; Erythropeltidales; Golgi; pyrenoids; ultrastructure INTRODUCTION Detailed molecular and culture studies coupled investigated with transmission electron microscopy with ultrastructural observations enable us to discover (TEM) (Scott et al. 2008, Yokoyama et al. 2009), and significant new genera and species of microscopic and the presence of a peripheral encircling thylakoid in macroscopic red algae (e.g., West et al. -
Alhanasios Alhanasiadis Taxonomy and Systematics of Rhodophyla With
Alhanasios Alhanas iadis Taxonomy and systematics of Rhodophyla with reference to the Mediterranean tua AhslruCI A l hnna~h"Ji s, A.: TlI.~onomy "nd syslcmalics or R/II.H.IUflhY/(I ..... ilh r ctÌ;rCII~'e lo llie I\kdilerTIlll~al1 ln ,~a. - FI. McdiI. 12: '13·167.1002. - ISSN 1110-44152. Th", r~d alga", (Rh()(Io/,hylO) cum:mly compris.: some 828 gencr~ and o\'er 4500 ~pccies of \\hich some 100 gcocr~ and o,a 550 spe.:ics are n:eorded io Ihe i\kdilerr.me3n region. Mokcubr dala ~I o n g \\ ilh Ull rJSlrueloral charnclerislies su ppon Ihe subJwis,oo or 1\-<1 alga!,' in Ihe Btmgiflfl/l)'t'etlo' Dnd Ihe FlDr;'kop/~,r:t'lW, . hc lancr groop d,s.ingUlshed mainly by bD,ing cOI' memhrnnes co\'C~ring pi'-plugs and spc-cialised gamdllngia (sp.::rmaloogia ond carpogooia llle lanCI' pn)\'Kkd Il itb Ltichogynes). Tht: Florhk'Up/J)'cl!m'are subdi> id.:d in '''0 maio lineag ç): Ih,.. lirSI mcludcs Ihe AovclwCli(l/t's, !'alnlllri"/I'), Nf'nlll/i"/t,s, C(lrlIllinllll's. HtIIrtJC''''ul.... rllllll .. s and .hc RI""/og"'Ku"ules." hich are diSlmgulsboo by ha"inl! ("IU'er l'al' lay, ers co\"erinl! .hdr pil·plop: Ihe second lineage is dis.inguished by lh", 1(1$5 of inner cap layl'f"S and includes Ihe Glgllrtin"les. Cryp'IJnt'mllllt's. HhmJym{'lIiah-s. GrucllarÙIIf.'s, BQlIIK'm/llsQlllalf.'1. Gelidi<lIi.'s. Ci.'fIlmillles. aoo Ihe A/ll1fi"lillll'.l. -
Audouinella and Compsopogon Are the Main Two Freshwater Algae Present in Planted Aquari- Ums and Often the Bane of Many Aquarist
Volume 3, Issue 3 Freshwater Red Algae: Rhodophyta Barr Report Barr Report with Tom Barr, Greg Watson, and the Plant Guru Team The Freshwater Red algae: Rhodophyta Special points of interest: • Red algae are often commonly called “… Red algae tend to Black Brush Algae and Staghorn Algae be poorly identified. • Only through verifica- The key should help tion and testing can future aquarists better we draw clear evi- dence identify the pest algae they encounter ...” • PO4 is an ineffective method to control algae • Red Algae appear to be very capable of withstanding low Figure 1. Compsopogon was not identified until the author identified it light, thus blackouts in 2002 as the main species labeled as “Staghorn Algae” in planted are ineffective. aquariums. It is a “red alga” even though it is generally a dull grey in color. Other pigments generally mask the character color of many spe- cies of algae. When decaying or dying, it will show the red pigment. Photo: University of Wisconsin, dept of Botany. Inside this issue: Red algae are typically a multicellular marine group but Feature Article 1 “Freshwater Red several species and genera are present in freshwater sys- Algae: Rhodophyta” tems. Primarily the genera Audouinella and Compsopogon are the main two freshwater algae present in planted aquari- ums and often the bane of many aquarist. However, many Importance of Testing 2 aquarist enjoy Audouinella alga on their rocks and drift- Assumptions wood for adding a more “natural feel” to their decor. Some A Practical Test 3 more common names for these are Black brush algae (generally shortened to the acronym: BBA) for Audouinella Background and 7 Identification and for staghorn algae for Compsopogon coeruleus. -
The Hawaiian Rhodophyta Biodiversity Survey
Sherwood et al. BMC Plant Biology 2010, 10:258 http://www.biomedcentral.com/1471-2229/10/258 RESEARCH ARTICLE Open Access The Hawaiian Rhodophyta Biodiversity Survey (2006-2010): a summary of principal findings Alison R Sherwood1*, Akira Kurihara1,2, Kimberly Y Conklin1,3, Thomas Sauvage1, Gernot G Presting4 Abstract Background: The Hawaiian red algal flora is diverse, isolated, and well studied from a morphological and anatomical perspective, making it an excellent candidate for assessment using a combination of traditional taxonomic and molecular approaches. Acquiring and making these biodiversity data freely available in a timely manner ensures that other researchers can incorporate these baseline findings into phylogeographic studies of Hawaiian red algae or red algae found in other locations. Results: A total of 1,946 accessions are represented in the collections from 305 different geographical locations in the Hawaiian archipelago. These accessions represent 24 orders, 49 families, 152 genera and 252 species/ subspecific taxa of red algae. One order of red algae (the Rhodachlyales) was recognized in Hawaii for the first time and 196 new island distributional records were determined from the survey collections. One family and four genera are reported for the first time from Hawaii, and multiple species descriptions are in progress for newly discovered taxa. A total of 2,418 sequences were generated for Hawaiian red algae in the course of this study - 915 for the nuclear LSU marker, 864 for the plastidial UPA marker, and 639 for the mitochondrial COI marker. These baseline molecular data are presented as neighbor-joining trees to illustrate degrees of divergence within and among taxa. -
Evolutionary History of the Monospecificcompsopogon Genus (Compsopogonales, Rhodophyta)
Research Article Algae 2016, 31(4): 303-315 https://doi.org/10.4490/algae.2016.31.10.22 Open Access Evolutionary history of the monospecific Compsopogon genus (Compsopogonales, Rhodophyta) Fangru Nan, Jia Feng, Junping Lv, Qi Liu and Shulian Xie* School of Life Science, Shanxi University, Taiyuan 030006, China Compsopogon specimens collected in China were examined based on morphology and DNA sequences. Five molecu- lar markers from different genome compartments including rbcL, COI, 18S rDNA, psbA, and UPA were identified and used to construct a phylogenetic relationship. Phylogenetic analyses indicated that two different morphological types from China clustered into an independent clade with Compsopogon specimens when compared to other global samples. The Compsopogon clade exhibited robust support values, revealing the affiliation of the samples toCompsopogon cae- ruleus. Although the samples were distributed in a close geographical area, unexpected sequence divergences between the Chinese samples implied that they were introduced by different dispersal events and from varied origins. It was speculated that Compsopogon originated in North America, a portion of the Laurentia landmass situated in the Rodinia supercontinent at approximately 573.89-1,701.50 million years ago during the Proterozoic era. Although Compsopogon had evolved for a rather long time, genetic conservation had limited its variability and rate of evolution, resulting in the current monospecific global distribution. Additional global specimens and sequence information were required to in- crease our understanding of the evolutionary history of this ancient red algal lineage. Key Words: Compsopogon; divergence time; geographic origin; molecular analysis; morphology; phylogenetic relationship INTRODUCTION Compsopogon Montagne 1846 is a typical Rhodophyta tics are widely variable both within and among popula- algal genus that inhabits freshwater and is globally dis- tions and with different environmental factors (Necchi et tributed (Kumanoa 2002). -
First Record of the Red Alga Compsopogon Caeruleus (Balbis Ex C
BioInvasions Records (2019) Volume 8, Issue 4: 753–763 CORRECTED PROOF Rapid Communication First record of the red alga Compsopogon caeruleus (Balbis ex C. Agardh) Montagne 1846 in the High Paraná River, Argentina-Paraguay Norma R. Meichtry de Zaburlín1, Leila B. Guzmán1, Micaela C. Escalada2, Víctor M. Llano2 and Roberto E. Vogler1,* 1Instituto de Biología Subtropical, Consejo Nacional de Investigaciones Científicas y Técnicas – Universidad Nacional de Misiones, Rivadavia 2370, Posadas, Misiones, N3300LDX, Argentina 2Universidad Nacional de Misiones, Facultad de Ciencias Exactas, Químicas y Naturales, Departamento de Biología, Rivadavia 2370, Posadas, Misiones, N3300LDX, Argentina Author e-mails: [email protected] (NMZ), [email protected] (LBG), [email protected] (MCE), [email protected] (VML), [email protected] (REV) *Corresponding author Citation: Meichtry de Zaburlín NR, Guzmán LB, Escalada MC, Llano VM, Abstract Vogler RE (2019) First record of the red alga Compsopogon caeruleus (Balbis ex C. The presence of a freshwater red alga (Rhodophyta), Compsopogon caeruleus, was Agardh) Montagne 1846 in the High recorded for the first time in the High Paraná River. It was detected in 2016 and Paraná River, Argentina-Paraguay. 2017 at five points along 290 km of the border between Argentina and Paraguay. BioInvasions Records 8(4): 753–763, High densities of filaments of the red alga were recorded in the summer months, https://doi.org/10.3391/bir.2019.8.4.03 forming masses flowing through the middle of the riverbed and banks, and not Received: 26 July 2018 recorded in the main body of the Yacyretá Binational Reservoir (Argentina- Accepted: 3 December 2018 Paraguay). -
Lemanea Manipurensis Sp. Nov. (Batrachospermales), a Freshwater Red Algal Species from North-East India
Research Article Algae 2015, 30(1): 1-13 http://dx.doi.org/10.4490/algae.2015.30.1.001 Open Access Lemanea manipurensis sp. nov. (Batrachospermales), a freshwater red algal species from North-East India E. K. Ganesan1,a, J. A. West2,*, G. C. Zuccarello3, S. Loiseaux de Goër4 and J. Rout5 1Instituto Oceanográfico, Universidad de Oriente, Cumaná, 6101, Venezuela 2School of Botany, University of Melbourne, Parkville, VIC 3010, Australia 3School of Biological Sciences, Victoria University of Wellington, Wellington, 6140, New Zealand 411 Rue des Moguerou, 29680 Roscoff, France 5Department of Ecology and Environmental Science, Assam University, Silchar, 788011, Assam, India A new macroscopic riverine red algal species, Lemanea manipurensis sp. nov. (Batrachospermales) is described from Manipur in northeast India. It has a sparsely branched, pseudoparenchymatous thallus with a single, central axial fila- ment that lacks cortical filaments. Spermatangia occur generally in isolated, low and indistinct patches or form an almost continuous ring around the axis. Carposporophytes project into the hollow thallus cavity without an ostiole. The most striking morphological feature is the carposporophyte with very short gonimoblast filaments having cylindrical, nar- row and sparsely branched sterile filaments, the terminal cell of each branch with a single, large, elongate carpospore. The widely distributed L. fluviatilis has spherical carpospores in long branched chains. Phylogenetic analysis of rbcL sequence data and comparison with other Batrachospermales clearly show that our specimens do not align with other species of Lemanea and Paralemanea investigated thus far. Five specific names attributed in previous literature (1973- 2014) to Lemanea from Manipur, L. australis, L. catenata, L. fluviatilis, L. -
First Record of Compsopogon Caeruleus (Balbis Ex C.Agardh) Montagne (Compsopogonophyceae, Rhodophyta) from Ogasawara Islands, Japan
Bull. Natl. Mus. Nat. Sci., Ser. B, 37(4), pp. 169–174, December 22, 2011 First Record of Compsopogon caeruleus (Balbis ex C.Agardh) Montagne (Compsopogonophyceae, Rhodophyta) from Ogasawara Islands, Japan Taiju Kitayama Department of Botany, National Museum of Nature and Science, 4–1–1 Amakubo, Tsukuba, Ibaraki 305–0005, Japan E-mail: [email protected] (Received 28 August 2011; accepted 28 September 2011) Abstract A benthic freshwater red alga, Compsopogon caeruleus (Balbis ex C.Agardh) Mon- tagne (Compsopogonophyceae, Rhodophyta) was recorded from Ogasawara Islands, Japan, for the first time. This species differs from the other species of the genus Compsopogon, in having cortex of less than three cell-layer, without spinous or curling branchlets, though the size of monosporan- gia is not considered to be a useful taxonomic character in this genus. Finding of C. caeruleus from the extraordinary isolated islands suggested that this alga has any means of dispersion other than flooding of the river’s water (e.g., remnant of marine regression, transportation by migratory birds). Key words : Compsopogon caeruleus, Compsopogonales, Compsopogonophyceae, Ogasawara Islands, red algae. A freshwater red alga referable to Compso- cific epithet is often spelled “coeruleus”, though pogon caeruleus (Balbis ex C.Agardh) Montagne C. Agardh (1824: 122) used “Conferva caerulea” (Compsopogonales, Compsopogonophyceae, (Guiry in Guiry and Guiry, 2006)). Since 2000, Rhodophyta) was collected from the stream on however, the Ministry of the Environment of Chichi-jima -
Estimates of Nuclear DNA Content in Red Algal Lineages
AoB PLANTS http://aobplants.oxfordjournals.org/ Open access – Research article Estimates of nuclear DNA content in red algal lineages Donald F. Kapraun1 and D. Wilson Freshwater2* 1 Department of Biological Sciences, University of North Carolina Wilmington, 601 South College Road, Wilmington, NC 28403-3915, USA 2 Center for Marine Science, University of North Carolina Wilmington, 5600 Marvin Moss Lane, Wilmington, NC 28409, USA Received: 29 October 2011; Returned for revision: 29 December 2011; Accepted: 6 February 2012; Published: 10 February 2012 Citation details: Kapraun DF, Freshwater DW. 2012. Estimates of nuclear DNA content in red algal lineages. AoB PLANTS 2012: pls005; doi:10.1093/aobpla/pls005 Downloaded from Abstract http://aobpla.oxfordjournals.org/ Background The red algae are an evolutionarily ancient group of predominantly marine organisms with and aims an estimated 6000 species. Consensus higher-level molecular phylogenies support a basal split between the unicellular Cyanidiophytina and morphologically diverse Rhodophytina, the later subphylum containing most red algal species. The Rhodophytina is divided into six classes, of which five represent early diverging lineages of generally uninucleate species, whose evolutionary relationships are poorly resolved. The remaining species compose the large (27 currently recognized orders), morphologically diverse and typically multinucleate Florideophyceae. Nuclear DNA content estimates have been published for ,1 % of the described red algae. The present investigation summarizes the state of our knowledge and at Randall Library, UNC Wilmington on March 22, 2012 expands our coverage of DNA content information from 196 isolates of red algae. Methodology The DNA-localizing fluorochrome DAPI (4′,6-diamidino-2-phenylindole) and RBC (chicken ery- throcytes) standards were used to estimate 2C values with static microspectrophotometry.