Insight Origin and Evolution of Vertebrates
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The Phylum Vertebrata: a Case for Zoological Recognition Naoki Irie1,2* , Noriyuki Satoh3 and Shigeru Kuratani4
Irie et al. Zoological Letters (2018) 4:32 https://doi.org/10.1186/s40851-018-0114-y REVIEW Open Access The phylum Vertebrata: a case for zoological recognition Naoki Irie1,2* , Noriyuki Satoh3 and Shigeru Kuratani4 Abstract The group Vertebrata is currently placed as a subphylum in the phylum Chordata, together with two other subphyla, Cephalochordata (lancelets) and Urochordata (ascidians). The past three decades, have seen extraordinary advances in zoological taxonomy and the time is now ripe for reassessing whether the subphylum position is truly appropriate for vertebrates, particularly in light of recent advances in molecular phylogeny, comparative genomics, and evolutionary developmental biology. Four lines of current research are discussed here. First, molecular phylogeny has demonstrated that Deuterostomia comprises Ambulacraria (Echinodermata and Hemichordata) and Chordata (Cephalochordata, Urochordata, and Vertebrata), each clade being recognized as a mutually comparable phylum. Second, comparative genomic studies show that vertebrates alone have experienced two rounds of whole-genome duplication, which makes the composition of their gene family unique. Third, comparative gene-expression profiling of vertebrate embryos favors an hourglass pattern of development, the most conserved stage of which is recognized as a phylotypic period characterized by the establishment of a body plan definitively associated with a phylum. This mid-embryonic conservation is supported robustly in vertebrates, but only weakly in chordates. Fourth, certain complex patterns of body plan formation (especially of the head, pharynx, and somites) are recognized throughout the vertebrates, but not in any other animal groups. For these reasons, we suggest that it is more appropriate to recognize vertebrates as an independent phylum, not as a subphylum of the phylum Chordata. -
Bibliography Database of Living/Fossil Sharks, Rays and Chimaeras (Chondrichthyes: Elasmobranchii, Holocephali) Papers of the Year 2016
www.shark-references.com Version 13.01.2017 Bibliography database of living/fossil sharks, rays and chimaeras (Chondrichthyes: Elasmobranchii, Holocephali) Papers of the year 2016 published by Jürgen Pollerspöck, Benediktinerring 34, 94569 Stephansposching, Germany and Nicolas Straube, Munich, Germany ISSN: 2195-6499 copyright by the authors 1 please inform us about missing papers: [email protected] www.shark-references.com Version 13.01.2017 Abstract: This paper contains a collection of 803 citations (no conference abstracts) on topics related to extant and extinct Chondrichthyes (sharks, rays, and chimaeras) as well as a list of Chondrichthyan species and hosted parasites newly described in 2016. The list is the result of regular queries in numerous journals, books and online publications. It provides a complete list of publication citations as well as a database report containing rearranged subsets of the list sorted by the keyword statistics, extant and extinct genera and species descriptions from the years 2000 to 2016, list of descriptions of extinct and extant species from 2016, parasitology, reproduction, distribution, diet, conservation, and taxonomy. The paper is intended to be consulted for information. In addition, we provide information on the geographic and depth distribution of newly described species, i.e. the type specimens from the year 1990- 2016 in a hot spot analysis. Please note that the content of this paper has been compiled to the best of our abilities based on current knowledge and practice, however, -
Sharks from the Middle-Late Devonian Aztec Siltstone, Southern Victoria Land, Antarctica
Records of the Western Australian Museum 17: 287-308 (1995). Sharks from the Middle-Late Devonian Aztec Siltstone, southern Victoria Land, Antarctica John A. Longl and Gavin C. Young2 I Western Australian Museum, Francis Street, Perth, Western Australia 6000 2 Australian Geological Survey Organisation, p.a. Box 378, Canberra, A.C.T. 2601 Abstract Shark teeth representing three new taxa are described from the Middle-Late Devonian Aztec Siltstone of southern Victoria Land, Antarctica. Portalodus bradshawae gen. et sp. novo is represented by large diplodont teeth which have a base with a well-produced labial platform. It occurs in the middle to upper sections of the Aztec Siltstone. Aztecodus harmsenae gen. et sp. novo is represented by broad bicuspid teeth, wider than high, with numerous medial crenulations and twin nutritive foramina penetrating the rectangular base. It occurs in the middle sections of the Aztec Siltstone. The teeth of Anareodus statei gen. et sp. novo are characterised by having a main cusp which is more than twice as high as the second cusp, a small cusplet developed on the outer cutting edge of the main cusp, sometimes with few crenulations developed in the middle of the two cusps, and the base is strongly concave. Antarctilanma cf. prisca Young, 1982 is also recorded from the middle and upper sections of the Aztec Siltstone above the thelodont horizons and occurring with phyllolepids and Pambulaspis in the Cook Mountains section south of Mt Hughes. The chondrichthyan fauna from the Aztec Siltstone now contains at least 5 species, being the most diverse assemblage of Middle Devonian chondrichthyans (based on teeth) from one stratigraphic unit. -
The Origins of Chordate Larvae Donald I Williamson* Marine Biology, University of Liverpool, Liverpool L69 7ZB, United Kingdom
lopmen ve ta e l B Williamson, Cell Dev Biol 2012, 1:1 D io & l l o l g DOI: 10.4172/2168-9296.1000101 e y C Cell & Developmental Biology ISSN: 2168-9296 Research Article Open Access The Origins of Chordate Larvae Donald I Williamson* Marine Biology, University of Liverpool, Liverpool L69 7ZB, United Kingdom Abstract The larval transfer hypothesis states that larvae originated as adults in other taxa and their genomes were transferred by hybridization. It contests the view that larvae and corresponding adults evolved from common ancestors. The present paper reviews the life histories of chordates, and it interprets them in terms of the larval transfer hypothesis. It is the first paper to apply the hypothesis to craniates. I claim that the larvae of tunicates were acquired from adult larvaceans, the larvae of lampreys from adult cephalochordates, the larvae of lungfishes from adult craniate tadpoles, and the larvae of ray-finned fishes from other ray-finned fishes in different families. The occurrence of larvae in some fishes and their absence in others is correlated with reproductive behavior. Adult amphibians evolved from adult fishes, but larval amphibians did not evolve from either adult or larval fishes. I submit that [1] early amphibians had no larvae and that several families of urodeles and one subfamily of anurans have retained direct development, [2] the tadpole larvae of anurans and urodeles were acquired separately from different Mesozoic adult tadpoles, and [3] the post-tadpole larvae of salamanders were acquired from adults of other urodeles. Reptiles, birds and mammals probably evolved from amphibians that never acquired larvae. -
Nerves of the Mandibular Musculature of the Sand Tiger Shark Carcharias Taurus (Rafinesque, 1810) (Chondrichthyes: Odontaspididae)
Int. J. Morphol., 23(4):387-392, 2005. Nerves of the Mandibular Musculature of the Sand Tiger Shark Carcharias taurus (Rafinesque, 1810) (Chondrichthyes: Odontaspididae) Nervios de la Musculatura Mandibular del Tiburón Toro Carcharias taurus (Rafinesque, 1810) (Chondrichthyes: Odontaspididae) *André Luis da Silva Casas; **Wagner Intelizano; **, ***Marcelo Fernandes de Souza Castro & *Arani Nanci Bonfim Mariana. CASAS, S. A. L.; INTELIZANO, W.; CASTRO, S. M. F. & MARIANA, B. A N. Nerves of the mandibular musculature of the sand tiger shark Carcharias taurus (Rafinesque, 1810) (Chondrichthyes: Odontaspididae). Int. J. Morphol., 23(4):387-392, 2005. SUMMARY: During this study, fifteen shark heads of sand tiger shark Carcharias taurus (Rafinesque, 1810) were analyzed. The studied material was obtained in the Santos Fishing Terminal, São Paulo, Brazil. The heads dissection was focused on the characterization of the mandibular muscles and on the description of the mandibular branch of the trigeminal nerve. The C. taurus mandibular muscles are represented by: m. preorbitalis, m. levator palatoquadrati, m. quadratomandibularis and m. intermandibularis. The origin of the trigeminal nerve of C. taurus is located in a lateral portion of the medulla oblongata. In the orbita, the trigeminal nerve branches off to originate the mandibular branch that innervates the muscles which are derived from the mandibular arch. The proximal branches of the trigeminal nerve mandibular branch innervate the m. levator palatoquadrati. The muscles preorbitalis and quadratomandibularis receive fibers from the intermediate branches of the trigeminal nerve mandibular branch and the distal ramification of the mandibular branch can be visualized in the m. intermandibularis. KEY WORDS: Shark; Anatomy; Trigeminal nerve; Mandibular musculature. -
Geological Survey of Ohio
GEOLOGICAL SURVEY OF OHIO. VOL. I.—PART II. PALÆONTOLOGY. SECTION II. DESCRIPTIONS OF FOSSIL FISHES. BY J. S. NEWBERRY. Digital version copyrighted ©2012 by Don Chesnut. THE CLASSIFICATION AND GEOLOGICAL DISTRIBUTION OF OUR FOSSIL FISHES. So little is generally known in regard to American fossil fishes, that I have thought the notes which I now give upon some of them would be more interesting and intelligible if those into whose hands they will fall could have a more comprehensive view of this branch of palæontology than they afford. I shall therefore preface the descriptions which follow with a few words on the geological distribution of our Palæozoic fishes, and on the relations which they sustain to fossil forms found in other countries, and to living fishes. This seems the more necessary, as no summary of what is known of our fossil fishes has ever been given, and the literature of the subject is so scattered through scientific journals and the proceedings of learned societies, as to be practically inaccessible to most of those who will be readers of this report. I. THE ZOOLOGICAL RELATIONS OF OUR FOSSIL FISHES. To the common observer, the class of Fishes seems to be well defined and quite distin ct from all the other groups o f vertebrate animals; but the comparative anatomist finds in certain unusual and aberrant forms peculiarities of structure which link the Fishes to the Invertebrates below and Amphibians above, in such a way as to render it difficult, if not impossible, to draw the lines sharply between these great groups. -
Contributions in BIOLOGY and GEOLOGY
MILWAUKEE PUBLIC MUSEUM Contributions In BIOLOGY and GEOLOGY Number 51 November 29, 1982 A Compendium of Fossil Marine Families J. John Sepkoski, Jr. MILWAUKEE PUBLIC MUSEUM Contributions in BIOLOGY and GEOLOGY Number 51 November 29, 1982 A COMPENDIUM OF FOSSIL MARINE FAMILIES J. JOHN SEPKOSKI, JR. Department of the Geophysical Sciences University of Chicago REVIEWERS FOR THIS PUBLICATION: Robert Gernant, University of Wisconsin-Milwaukee David M. Raup, Field Museum of Natural History Frederick R. Schram, San Diego Natural History Museum Peter M. Sheehan, Milwaukee Public Museum ISBN 0-893260-081-9 Milwaukee Public Museum Press Published by the Order of the Board of Trustees CONTENTS Abstract ---- ---------- -- - ----------------------- 2 Introduction -- --- -- ------ - - - ------- - ----------- - - - 2 Compendium ----------------------------- -- ------ 6 Protozoa ----- - ------- - - - -- -- - -------- - ------ - 6 Porifera------------- --- ---------------------- 9 Archaeocyatha -- - ------ - ------ - - -- ---------- - - - - 14 Coelenterata -- - -- --- -- - - -- - - - - -- - -- - -- - - -- -- - -- 17 Platyhelminthes - - -- - - - -- - - -- - -- - -- - -- -- --- - - - - - - 24 Rhynchocoela - ---- - - - - ---- --- ---- - - ----------- - 24 Priapulida ------ ---- - - - - -- - - -- - ------ - -- ------ 24 Nematoda - -- - --- --- -- - -- --- - -- --- ---- -- - - -- -- 24 Mollusca ------------- --- --------------- ------ 24 Sipunculida ---------- --- ------------ ---- -- --- - 46 Echiurida ------ - --- - - - - - --- --- - -- --- - -- - - --- -
Limb Bone Loading in Salamanders During Terrestrial
1042 ICVM-8 ABSTRACTS I. Plenary Lectures are also cases of syngeny, the opposite condition being allogeny, which essentially equals convergence. Likewise, the concept of field homology Comparative Vertebrate Neuroanatomy: Diversity in Brain Evolution has been bolstered by illumination of developmental events. Functional Across the Taxon characteristics, including neuronal physiology and correlated behavioral Ann B. Butler; Krasnow Institute for Advanced Study and Department of outcomes, are not appropriate criteria for any kind of homology, how- Psychology, George Mason University, Fairfax VA, USA (abbutler@ ever, but rather indicate similar function, i.e., analogy. gmu.edu) Comparison of the telencephalic pallium (and some other elaborated The extensive data now available on brain anatomy in all of the major dorsal neural derivatives) across Group II vertebrates implies that both vertebrate radiations—cyclostomes, cartilaginous fishes, ray-finned shared patterning genes for elaboration plus unique gene expression pat- fishes, and tetrapods—are of interest not only for understanding the terns and/or timing differences contribute to substantial diversity of neural diverse lines of brain evolution but also for their more general implica- architectures, and controversy persists over possible homological relation- tions, including theoretical aspects of how and what homology is and ships of some pallial areas, particularly between mammals and sauropsids. bioethical issues ranging from animal welfare considerations to how Both the pallium—specifically mammalian neocortex—and dorsal thala- consciousness evolved and what its neural substrate consists of. To mus have been hypothesized to be involved in the generation of con- address these issues, the breadth of diversity in brain evolution will be sciousness, including the higher-order consciousness of humans. -
Global Catfish Biodiversity 17
American Fisheries Society Symposium 77:15–37, 2011 © 2011 by the American Fisheries Society Global Catfi sh Biodiversity JONATHAN W. ARMBRUSTER* Department of Biological Sciences, Auburn University 331 Funchess, Auburn University, Alabama 36849, USA Abstract.—Catfi shes are a broadly distributed order of freshwater fi shes with 3,407 cur- rently valid species. In this paper, I review the different clades of catfi shes, all catfi sh fami- lies, and provide information on some of the more interesting aspects of catfi sh biology that express the great diversity that is present in the order. I also discuss the results of the widely successful All Catfi sh Species Inventory Project. Introduction proximately 10.8% of all fi shes and 5.5% of all ver- tebrates are catfi shes. Renowned herpetologist and ecologist Archie Carr’s But would every one be able to identify the 1941 parody of dichotomous keys, A Subjective Key loricariid catfi sh Pseudancistrus pectegenitor as a to the Fishes of Alachua County, Florida, begins catfi sh (Figure 2A)? It does not have scales, but it with “Any damn fool knows a catfi sh.” Carr is right does have bony plates. It is very fl at, and its mouth but only in part. Catfi shes (the Siluriformes) occur has long jaws but could not be called large. There is on every continent (even fossils are known from a barbel, but you might not recognize it as one as it Antarctica; Figure 1); and the order is extremely is just a small extension of the lip. There are spines well supported by numerous complex synapomor- at the front of the dorsal and pectoral fi ns, but they phies (shared, derived characteristics; Fink and are not sharp like in the typical catfi sh. -
Molecular Clocks Provide New Insights Into the Evolutionary History of Galeichthyine Sea Catfishes
ORIGINAL ARTICLE doi:10.1111/j.1558-5646.2009.00640.x MOLECULAR CLOCKS PROVIDE NEW INSIGHTS INTO THE EVOLUTIONARY HISTORY OF GALEICHTHYINE SEA CATFISHES Ricardo Betancur-R.1,2 and Jonathan W. Armbruster1 1Department of Biological Sciences, Auburn University, 331 Funchess Hall, Auburn, Alabama 36849 2E-mail: [email protected] Received August 28, 2008 Accepted January 7, 2009 Intercontinental distributions in the southern hemisphere can either be the result of Gondwanan vicariance or more recent transoceanic dispersal. Transoceanic dispersal has come into vogue for explaining many intercontinental distributions; however, it has been used mainly for organisms that can float or raft between the continents. Despite their name, the Sea Catfishes (Ariidae) have limited dispersal ability, and there are no examples of nearshore ariid genera with a transoceanic distribution except for Galeichthys where three species occur in southern Africa and one in the Peruvian coast. A previous study suggested that the group originated in Gondwana, and that the species arrived at their current range after the breakup of the supercontinent in the Early Cretaceous. To test this hypothesis, we infer molecular phylogenies (mitochondrial cytochrome b, ATP synthase 8/6, 12S, and 16S; nuclear rag2; total ∼4 kb) and estimate intercontinental divergence via molecular clocks (penalized-likelihood, Bayesian relaxed clock, and universal clock rates in fishes). Age ranges for cladogenesis of African and South American lineages are 15.4–2.5 my, far more recent than would be suggested by Gondwanan vicariance; thus, the distribution of galeichthyines must be explained by dispersal or more recent vicariant events. The nested position of the Peruvian species (Galeichthys peruvianus) within the African taxa is robust, suggesting that the direction of the dispersal was from Africa to South America. -
J32 the Importance of the Burgess Shale < Soft Bodied Fauna >
580 Chapter j PALEOCONTINENTS The Present is the Key to the Past: HUGH RANCE j32 The importance of the Burgess shale < soft bodied fauna > Only about 33 animal body plans are presently [sic] being used on this planet (Margulis and Schwartz, 1988). —Scott F. Gilbert, Developmental Biology, 1991.1 Almost all animal phyla known today were already present by 505 million years ago— the age of the Burgess shale, Middle Cambrian marine sediments, discovered at the Kicking Horse rim, British Columbia, in 1909 by Charles Doolittle Walcott, that provide a unique window on life without hard parts that had continued to exist shortly after the time of the Cambrian explosion (see Topic j34).2 Legend has it that Walcott, then secretary of the Smithsonian Institution, vacationing near Field, British Columbia, was thrown from a horse carrying him, when it tripped on, and split open a stray fallen slab of shale. Walcott, with his face literally rubbed in it, saw strange, but not hallucinational, forms crisply etched in black against the blue-black bedding surface of the shale: a bonanza of fossils of sea creatures without mineralized shells or backbones. Many are preserved whole; including those with articulated organic (biodegradable) exoskeletons. Details of even their soft body parts can be seen (best using PTM)3 as silvery films (formed of phyllosilicates on a coating of kerogenized carbon) that commonly outline even the most delicate structures on the fossilized animal.4 The Burgess shale is part of the Stephen Formation of greenish shales and thin-bedded limestones, which is a marine-offlap deposit between the thick, massive, carbonates of the overlying Eldon formation, and the underlying Cathedral formation.6 As referenced in the Geological Atlas of the Western Canada Sedimentary Basin - Chapter 8, the Stephen Formation has been “informally divided into a normal, ‘thin Stephen’ on the platform areas and a ‘thick Stephen’ west of the Cathedral Escarpment. -
A Paleontological Perspective of Vertebrate Origin
http://www.paper.edu.cn Chinese Science Bulletin 2003 Vol. 48 No. 8 725-735 Cover: The earliest-known and most primitive vertebrates on the A paleontological perspective Earth---Myllokunmingia fengjiaoa , (upper) Zhongjianichthys rostratus of vertebrate origin ( middle ), Haikouichthys ercaicunensis (lower left and lower right). They were SHU Degan Early Life Institute & Department of Geology, Northwest products of the early Cambrian Explosion, University, Xi’an, 710069, China; School of Earth excavated from the famous Chengjiang Sciences and Resources, China University of Geosciences, Beijing, 100083, China Lagersttat, which was formed in the (e-mail:[email protected]) eastern Yunnan about 530 millions of years ago. These ancestral vertebrates not only Abstract The Early Cambrian Haikouichthys and Haikouella have been claimed to be related to contribute in an important developed primitive separate vertebral way to our understanding of vertebrate origin, but there have elements, but also possessed principal been heated debates about how exactly they are to be interpreted. New discoveries of numerous specimens of sensory organs, including a pair of large Haikouichthys not only confirm the identity of previously lateral eyes, nostril with nasal sacs, then described structures such as the dorsal and the ventral fins, and chevron-shaped myomeres, but also reveal many new had led to the transition from acraniates to important characteristics, including sensory organs of the head craniates (true vertebrates). The (e.g. large eyes), and a prominent notochord with differentiated vertebral elements. This “first fish” appears, discoveries of these “naked” agnathans however, to retain primitive reproductive features of have pushed the earliest record of acraniates, suggesting that it is a stem-group craniates.