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Training Manual Series No.15/2018
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by CMFRI Digital Repository DBTR-H D Indian Council of Agricultural Research Ministry of Science and Technology Central Marine Fisheries Research Institute Department of Biotechnology CMFRI Training Manual Series No.15/2018 Training Manual In the frame work of the project: DBT sponsored Three Months National Training in Molecular Biology and Biotechnology for Fisheries Professionals 2015-18 Training Manual In the frame work of the project: DBT sponsored Three Months National Training in Molecular Biology and Biotechnology for Fisheries Professionals 2015-18 Training Manual This is a limited edition of the CMFRI Training Manual provided to participants of the “DBT sponsored Three Months National Training in Molecular Biology and Biotechnology for Fisheries Professionals” organized by the Marine Biotechnology Division of Central Marine Fisheries Research Institute (CMFRI), from 2nd February 2015 - 31st March 2018. Principal Investigator Dr. P. Vijayagopal Compiled & Edited by Dr. P. Vijayagopal Dr. Reynold Peter Assisted by Aditya Prabhakar Swetha Dhamodharan P V ISBN 978-93-82263-24-1 CMFRI Training Manual Series No.15/2018 Published by Dr A Gopalakrishnan Director, Central Marine Fisheries Research Institute (ICAR-CMFRI) Central Marine Fisheries Research Institute PB.No:1603, Ernakulam North P.O, Kochi-682018, India. 2 Foreword Central Marine Fisheries Research Institute (CMFRI), Kochi along with CIFE, Mumbai and CIFA, Bhubaneswar within the Indian Council of Agricultural Research (ICAR) and Department of Biotechnology of Government of India organized a series of training programs entitled “DBT sponsored Three Months National Training in Molecular Biology and Biotechnology for Fisheries Professionals”. -
Chumbe Island Coral Park Conservation and Education Status Report 2013
Chumbe Island Coral Park Conservation and Education Status Report 2013 Zanzibar, Tanzania Index Foreword………………………………………………………………………………… 3 Part II: Environmental Education……………………………………………………... 25 Introduction CHICOP…………………………………………………………………... 4 Management Plan 2006-2016…………………………………………………… 26 Chumbe Field Excursions………………………………………………………… 27 Part I: Conservation Programs………………………………………………………. 5 Educational Outcomes……………………………………………………………. 28 Management Plan 2006 – 2016…………………………………………………. 6 The Chumbe Challenge………………………………………………………….. 29 Key Values of the MPA…………………………………………………………… 7 Community Outreach …………………………………………………………….. 30 Chumbe Reef Sanctuary (CRS) ………………………………………………… 8 Island Ranger Training……………………………………………………………. 31 Borders of the CRS ………………………………………………………………. 9 Chumbe aims Zero Waste………………………………………………………... 32 Tresspassing ……………………………………………………………………… 10 Celebration of International Events……………………………………………… 33 Fauna in the CRS…………………………………………………………………. 11 Monitoring Programs……………………………………………………………… 12 Acknowledgements……………………………………………………………………... 34 Coral Reef Monitoring…………………………………………………………….. 13 References………………………………………………………………………………... 35 Monitoring results: Fish communities ………………………......……………… 14 Appendix: Species Lists……………………………………………………………….. 36 Monitoring results: Sea urchins …………………………………………………. 15 Monitoring results: Crown-of-thorns starfish …………………………………… 16 Seagrass monitoring……………………………………………………………… 17 Closed Forest Habitat (CFH) ……………………………………………………. 18 Ader’s Duiker………………………………………………………………………..19 Coconut -
Pacific Reef Assessment and Monitoring Program Data Report
Pacific Reef Assessment and Monitoring Program Data Report Ecological monitoring 2012–2013—reef fishes and benthic habitats of the main Hawaiian Islands, American Samoa, and Pacific Remote Island Areas A. Heenan1, P. Ayotte1, A. Gray1, K. Lino1, K. McCoy1, J. Zamzow1, and I. Williams2 1 Joint Institute for Marine and Atmospheric Research University of Hawaii at Manoa 1000 Pope Road Honolulu, HI 96822 2 Pacific Islands Fisheries Science Center National Marine Fisheries Service NOAA Inouye Regional Center 1845 Wasp Boulevard, Building 176 Honolulu, HI 96818 ______________________________________________________________ NOAA Pacific Islands Fisheries Science Center PIFSC Data Report DR-14-003 Issued 1 April 2014 This report outlines some of the coral reef monitoring surveys conducted by the National Oceanic and Atmospheric Administration (NOAA) Pacific Islands Fisheries Science Center’s Coral Reef Ecosystem Division in 2012 and 2013. This includes the following regions: American Samoa, the main Hawaiian Islands and the Pacific Remote Island Areas. 2 Acknowledgements Thanks to all those onboard the NOAA ships Hi`ialakai and Oscar Elton Sette for their logistical and field support during the 2012-2013 Pacific Reef Assessment and Monitoring Program (Pacific RAMP) research cruises and to the following divers for their assistance with data collection; Senifa Annandale, Jake Asher, Marie Ferguson, Jonatha Giddens, Louise Giuseffi, Mark Manuel, Marc Nadon, Hailey Ramey, Ben Richards, Brett Schumacher, Kosta Stamoulis and Darla White. We thank Rusty Brainard for his tireless support of Pacific RAMP and the staff of NOAA PIFSC CRED for assistance in the field and data management. This work was funded by the NOAA Coral Reef Conservation Program and the Pacific Islands Fisheries Science Center. -
Chumbe Island Management Plan 2017-2027
CHUMBE ISLAND rd 3 Ten Year Management Plan 2017 - 2027 This document is the third ten-year management plan for Chumbe Island Coral Park in Zanzibar, Tanzania. The two previous management plans covered the periods of 1995 to 2005, and 2006 to 2016 respectively. 2027 Goal The Chumbe Island Coral Reef Sanctuary and Closed Forest Reserve are effectively and sustainably managed in order to maximize their contribution to biodiversity conservation, serve as a model for effective ecotourism and MPA management, and provide a platform to promote wider environmental awareness for sustainable development and ecological stewardship in Zanzibar. Produced with support from: Sustainable Solutions International Consulting (SSIC) 2 Published by: Chumbe Island Coral Park (CHICOP) Citation: CHICOP (2017) 3rd Ten Year Management Plan for Chumbe Island Coral Park. Photos & images: Citations provided throughout document where required. All images permissible for use through creative commons or associated licensing, and/or direct owner consent. Cover photo: © CHICOP Design & layout: Sustainable Solutions International Consulting Available from: CHICOP, Zanzibar, Tanzania. E: [email protected] T: +255 (0) 242 231 040 3rd Ten Year Management Plan 2017 – 2027 Chumbe Island Coral Park 3 Contents Acronyms and Abbreviations .................................................................................................................. 6 Figures .................................................................................................................................................... -
TUVALU MARINE LIFE PROJECT Phase 1: Literature Review
TUVALU MARINE LIFE PROJECT Phase 1: Literature review Project funded by: Tuvalu Marine Biodiversity – Literature Review Table of content TABLE OF CONTENT 1. CONTEXT AND OBJECTIVES 4 1.1. Context of the survey 4 1.1.1. Introduction 4 1.1.2. Tuvalu’s national adaptation programme of action (NAPA) 4 1.1.3. Tuvalu national biodiversity strategies and action plan (NBSAP) 5 1.2. Objectives 6 1.2.1. General objectives 6 1.2.2. Specific objectives 7 2. METHODOLOGY 8 2.1. Gathering of existing data 8 2.1.1. Contacts 8 2.1.2. Data gathering 8 2.1.3. Documents referencing 16 2.2. Data analysis 16 2.2.1. Data verification and classification 16 2.2.2. Identification of gaps 17 2.3. Planning for Phase 2 18 2.3.1. Decision on which survey to conduct to fill gaps in the knowledge 18 2.3.2. Work plan on methodologies for the collection of missing data and associated costs 18 3. RESULTS 20 3.1. Existing information on Tuvalu marine biodiversity 20 3.1.1. Reports and documents 20 3.1.2. Data on marine species 24 3.2. Knowledge gaps 41 4. WORK PLAN FOR THE COLLECTION OF FIELD DATA 44 4.1. Meetings in Tuvalu 44 4.2. Recommendations on field surveys to be conducted 46 4.3. Proposed methodologies 48 4.3.1. Option 1: fish species richness assessment 48 4.3.2. Option 2: valuable fish stock assessment 49 4.3.3. Option 3: fish species richness and valuable fish stock assessment 52 4.3.4. -
Checklist of the Shore Fishes of Europa Island, Mozambique Channel, Southwestern Indian Ocean, Including 302 New Records
Stuttgarter Beiträge zur Naturkunde A, Neue Serie 6: 247–276; Stuttgart, 30.IV.2013 247 Checklist of the shore fishes of Europa Island, Mozambique Channel, southwestern Indian Ocean, including 302 new records RONALD FRICKE, PATRICK DURVILLE, GIACOMO BERNARDI, PHILIPPE BORSA, GÉRARD MOU-THAM & PASCALE CHABANET Abstract An annotated checklist of the fish species of Europa Island (Mozambique Channel, southwestern Indian Ocean) comprises a total of 389 species in 62 families. 302 species are recorded from Europa Island for the first time. All species are autochthonous; no introduced species have been found. The fish fauna is exclusively marine, with the Labridae, Pomacentridae, Serranidae, Gobiidae and Acanthuridae being the families with most representatives. The fish fauna at Europa Island is typical for offshore, low islands in the southwestern Indian Ocean. Zoogeo- graphically, the main element of the fish fauna of Europa Island consists of widespread tropical Indo-Pacific species (292 species, 75.1 % of the total occurring species). A total of 13 species (3.3 %) are found worldwide, either cir- cumtropical or circumtropical including warm temperate zones. An additional 76 species (19.5 %) are Indian Ocean endemics, including 36 western Indian Ocean endemics (9.2 %), and 10 southwestern Indian Ocean endemics (2.6 %). No endemic fish species are reported for Europa Island. K e y w o r d s : Checklist, Pisces, southwestern Indian Ocean, Europa Island, new records, zoogeography. Zusammenfassung Die Checkliste der Fische der Insel Europa (Kanal von Mosambik, südwestlicher Indischer Ozean) enthält 389 Arten in 62 Familien. 302 Arten werden zum ersten Mal von der Insel Europa beobachtet. Alle Fischarten sind au- thochthon; es wurden keine durch den Menschen eingeführten oder eingeschleppten Arten gefunden. -
Mariana Archipelago Fishery Ecosystem Plan 2017
ANNUAL STOCK ASSESSMENT AND FISHERY EVALUATION REPORT: MARIANA ARCHIPELAGO FISHERY ECOSYSTEM PLAN 2017 Western Pacific Regional Fishery Management Council 1164 Bishop St., Suite 1400 Honolulu, HI 96813 PHONE: (808) 522-8220 FAX: (808) 522-8226 www.wpcouncil.org The ANNUAL STOCK ASSESSMENT AND FISHERY EVALUATION REPORT for the MARIANA ARCHIPELAGO FISHERY ECOSYSTEM 2017 was drafted by the Fishery Ecosystem Plan Team. This is a collaborative effort primarily between the Western Pacific Regional Fishery Management Council, NMFS-Pacific Island Fisheries Science Center, Pacific Islands Regional Office, Division of Aquatic Resources (HI) Department of Marine and Wildlife Resources (AS), Division of Aquatic and Wildlife Resources (Guam), and Division of Fish and Wildlife (CNMI). This report attempts to summarize annual fishery performance looking at trends in catch, effort and catch rates as well as provide a source document describing various projects and activities being undertaken on a local and federal level. The report also describes several ecosystem considerations including fish biomass estimates, biological indicators, protected species, habitat, climate change, and human dimensions. Information like marine spatial planning and best scientific information available for each fishery are described. This report provides a summary of annual catches relative to the Annual Catch Limits established by the Council in collaboration with the local fishery management agencies. Edited By: Marlowe Sabater, Asuka Ishizaki, Thomas Remington, and Sylvia Spalding, WPRFMC. This document can be cited as follows: WPRFMC, 2018. Annual Stock Assessment and Fishery Evaluation Report for the Mariana Archipelago Fishery Ecosystem Plan 2017. Sabater, M., Ishizaki, A., Remington, T., Spalding, S. (Eds.) Western Pacific Regional Fishery Management Council. -
Compiled by Moses John Amos Fisheries Department, Port Vila VANUATU
Vanuatu Fisheries Resource Profile VANUATU FISHERIES RESOURCE PROFILES Compiled by Moses John Amos Fisheries Department, Port Vila VANUATU Sponsored by The International Waters Programme of the Vanuatu node funded by GEF, Implemented by UNDP and executed by SPREP 1 Vanuatu Fisheries Resource Profile The PREFACE The International Waters Programme of the Vanuatu node funded by GEF implemented by UNDP and executed by SPREP was requested to provide funding assistance for the review and up date the “Republic of Vanuatu Fisheries Resource Profiles” prepared by Lui A. J Bell and Moses J. Amos in 1993. The purpose of the profiles were to: • provide information for the Government on the level of fresh water and marine resources available for appropriate development planning and instigating regulatory controls for resource conservation and management; • facilitate the dissemination of information and data that are required within government, local communities as well as regionally and internationally; and, • facilitate the provision of concise and timely information required by potential investors. The Terms of Reference for the review are as follows: • Undertake library research to collate and assess all existing documentation, data. Images, etc.., which provides information relating to the resource identity, and abundance, distribution, exploitation, marketing and current management measures in Vanuatu; • Based on the information examined and the Fisheries Resource Profile for Vanuatu prepared by FFA in 1991: i. provide and update list for fresh water and marine resources to include their identity, abundance and local distribution, ii. describe the utilization of the resources including the exploitation and marketing information of each resource, and; iii. describe current management (including proposed management plans) for each resource described. -
The Use of Fish Species in a Marine Conservation Plan for Kwazulu-Natal
31/03/2011 The use of fish species in a marine conservation plan for KwaZulu-Natal. The use of fish species in a marine conservation plan for KwaZulu-Natal By Philip Haupt Submitted in partial fulfillment of the requirements for the degree of MSc in the Faculty of Science at the Nelson Mandela Metropolitan University. 31 March 2011 Supervisor: Dr A.T. Lombard Co-supervisors: Dr P.S. Goodman, Dr K. Sink Specialist advisors: Mr B. Q. Mann, Dr E. Lagabrielle, Dr J. Harris Philip Haupt, MSc thesis, Nelson Mandela Metropolitan University 31/03/2011 The use of fish species in a marine conservation plan for KwaZulu-Natal. Table of contents Summary..….…………….………….…………….…………….………….……………. Pages i-ii General Introduction The use of fish species in a marine conservation plan for KwaZulu-Natal. ….………….……1 Chapter One Selecting Fish Species for Marine Conservation planning…………….…………….…………16 Chapter Two Spatial and temporal resolution of marine fish data in KwaZulu-Natal…………….…………53 Chapter Three Modelling seasonal species life cycle envelopes for marine fish in KwaZulu-Natal…………93 Chapter Four Spatio-temporal marine conservation planning for fish species in KwaZulu-Natal…………128 General Conclusions……………………………………………………………….……………169 Overall acknowledgements……………………………………………………….……………176 Appendices (follows Overall acknowledgements) Appendix 1…………………………………………………………….………………….Pages 1-19 Appendix 2…………………………………………….…………………………….…….Pages 1-3 Appendix 3……………………………………………………...………………………….Pages 1-2 Appendix 4………………………………………………………………...……………….Pages 1-2 Appendix 5………………………………………………………………...……………….Pages -
Appendix F. AIMS Regional Shoals and Shelf
Appendix F. AIMS Regional Shoals and Shelf Assessment (Heyward et al. 2017) *ODMVEFT"EEFOEVN 3FHJPOBM#JPEJWFSTJUZ1BUUFSOTBOE$POOFDUJWJUZ"NPOHTUUIF 4VCNFSHFE4IPBMTBOE#BOLTJO3FMBUJPOUPUIF"SFBPG*OGMVFODF GSPNB)ZQPUIFUJDBM6ODPOUSPMMFE3FMFBTF BAROSSA ENVIRONMENTAL BASELINE STUDY 2015 AIMS FINAL REPORT SERINGAPATAM REEF BASELINE SURVEYS 2012-2013 Regional Shoals & Shelf Assessment 2015 Authors: Andrew Heyward, Ben Radford, Mike Cappo, Mary Wakeford, Rebecca Fisher, Jamie Colquhoun, Mark Case, Marcus Stowar, Karen Miller PRODUCED FOR ConocoPhillips Australia Pty Ltd Contract No. 251834.0-MSA-COMP-2.0 PERTH April 2017 Rev 1 BAROSSA ENVIRONMENTAL BASELINE STUDY 2015 AIMS FINAL REPORT SERINGAPATAM REEF BASELINE SURVEYS 2012-2013 Final: 30 March 2009 Australian Institute of Marine Science PMB No 3 Townsville MC Qld 4810 University of Western Australia Oceans Institute (M096) 35 Stirling Hwy Crawley WA 6009 PO Box 41775 Casuarina NT 0811 This report should be cited as: A Heyward et al. 2017; Barossa Environmental Baseline Study, Regional Shoals and Shelf Assessment 2015 Final Report. A report for ConocoPhillips Australia Exploration Pty Ltd by the Australian Institute of Marine Science, Perth 2017. 143pp Corresponding Author: Dr Andrew Heyward [email protected] © Copyright Australian Institute of Marine Science (AIMS) and ConocoPhillips Australia Pty Ltd. 2017 All rights are reserved and no part of this document may be reproduced, stored or copied in any form or by any means whatsoever except with the prior written permission of AIMS and COPA. Revision History Issue Rev 1 Apr 2017 Issue Rev 0 Oct 2016 Draft Rev B Sept 2016 Draft Rev A June 2016 Acknowledgments: This survey relied on the professionalism and support of RV Solander’s Master & crew. -
Book of Abstracts
THE 10th INDO-PACIFIC FISH CONFERENCE Book of Abstracts TAHITI - 2-6 October 2017 1 Table of contents A1/ Evolution and biology of `primitive' and fossil fishes 33 Adaptive radiation of Pelagia (Teleostei: Acanthomorpha) indicated by 3D mor- phometry, Hermione Beckett [et al.]......................... 34 Awesome variation in genomic organization in polyploid Acipenseriformes, Anna Barmintseva [et al.]................................... 35 Dead fish CSI: Reconstructing the enigmatic Late Cretaceous billfish analogue Protosphyraena (Teleosteomorpha: Pachycormidae), Anthony Maltese...... 36 Early members of a `living fossil' lineage and a later origin for modern ray-finned fishes, Sam Giles [et al.]................................ 37 Insight on sturgeon phylogeny and biogeography from mitogenomes and NGS- based nuclear loci sequencing., Nikolai Mugue [et al.]................ 38 Megaplanktivory, Past and Present: A comparison of Jurassic large suspension- feeders of the IndoPacific with contemporary analogues., Jeff Liston....... 39 New Data on the Endoskeletal Morphology and Evolution of Early Jawed Fishes, Mar- tin Brazeau [et al.]................................... 40 New marine fish faunas from the middle Eocene (Lutetian) of Pakistan: implica- tions for the origin of the Indo-Pacific fauna, Matt Friedman [et al.]....... 41 Polyploid evolution and functional genome diploidization in sturgeons, Victor Vasil'ev [et al.]..................................... 42 Saber-toothed fossil anchovies (Teleostei: Engrauloidea) from the early-middle Eocene of -
On the Underwater Visual Census of Western Indian Ocean Coral Reef Fishes
On the underwater visual census of Western Indian Ocean coral reef fishes A thesis submitted in fulfilment of the requirements for the degree of MASTER OF SCIENCE of RHODES UNIVERSITY by REECE WARTENBERG April 2012 Abstract Abstract This study conducted the first high-resolution investigation of the ichthyofaunal assemblages on a high-latitude coral reef in the Western Indian Ocean (WIO). Two-Mile reef, in South Africa, is a large, accessible patch-reef, and was selected as a candidate study area. Although the effect of season in structuring coral reef fish communities is most-often overlooked, the relationship between these fish communities and their habitat structure has been investigated. In South Africa, however, neither of these potential community-level drivers has been explored. As coral reefs worldwide are faced with high levels of usage pressure, non- destructive underwater visual census (UVC) techniques were identified as the most appropriate survey methods. This study had two primary aims that were; (1) to identify the most suitable technique for the UVC of coral reef fishes, and to test variations of the selected technique for appropriateness to implementation in long-term monitoring programs, and (2) to determine if possible changes to ichthyofaunal community structure could be related to trends in season and/or habitat characteristics. A review of the literature indicated that the most appropriate UVC method for surveying epibenthic coral reef fishes is underwater transecting. To compare the traditional slate-based transects to variations that implement digital image technology, slate transects were compared to a first-attempt digital photographic transect technique, and digital videographic transects.