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Carnitine Metabolism to Trimethylamine by an Unusual Rieske-Type Oxygenase from Human Microbiota
Carnitine metabolism to trimethylamine by an unusual Rieske-type oxygenase from human microbiota Yijun Zhua,1, Eleanor Jamesona,1, Marialuisa Crosattib,1, Hendrik Schäfera, Kumar Rajakumarb, Timothy D. H. Buggc, and Yin Chena,2 aSchool of Life Sciences and cDepartment of Chemistry, University of Warwick, Coventry CV4 7AL, United Kingdom; and bDepartment of Infection, Immunity, and Inflammation, University of Leicester, Leicester LE1 9HN, United Kingdom Edited by David W. Russell, University of Texas Southwestern Medical Center, Dallas, TX, and approved January 29, 2014 (received for review September 5, 2013) Dietary intake of L-carnitine can promote cardiovascular diseases in (14, 15). Assigning functions encoded in the human microbiome humans through microbial production of trimethylamine (TMA) using existing databases can be problematic. For example, the and its subsequent oxidation to trimethylamine N-oxide by hepatic Pfam protein database currently contains over 25% of protein flavin-containing monooxygenases. Although our microbiota are re- families with no assigned functions (release 26.0) (19). sponsible for TMA formation from carnitine, the underpinning mo- Lack of functional characterization of key microbial functions lecular and biochemical mechanisms remain unclear. In this study, in our microbiota is exemplified by very recent studies on car- using bioinformatics approaches, we first identified a two-component diovascular diseases (20–23). These studies have shown that the Rieske-type oxygenase/reductase (CntAB) and associated gene human microbiota is responsible for the production of trime- cluster proposed to be involved in carnitine metabolism in repre- thylamine N-oxide (TMAO), which is believed to promote ath- sentative genomes of the human microbiota. CntA belongs to a erogenesis through its interaction with macrophages and lipid group of previously uncharacterized Rieske-type proteins and has metabolism (20–23). -
Upper and Lower Case Letters to Be Used
Isolation, characterization and genome sequencing of a soil-borne Citrobacter freundii strain capable of detoxifying trichothecene mycotoxins by Rafiqul Islam A Thesis Presented to The University of Guelph In Partial Fulfilment of Requirements for the Degree of Doctor of Philosophy in Plant Agriculture Guelph, Ontario, Canada © Rafiqul Islam, April, 2012 ABSTRACT ISOLATION, CHARACTERIZATION AND GENOME SEQUENCING OF A SOIL- BORNE CITROBACTER FREUNDII STRAIN CAPABLE OF DETOXIFIYING TRICHOTHECENE MYCOTOXINS Rafiqul Islam Advisors: University of Guelph, 2012 Dr. K. Peter Pauls Dr. Ting Zhou Cereals are frequently contaminated with tricthothecene mycotoxins, like deoxynivalenol (DON, vomitoxin), which are toxic to humans, animals and plants. The goals of the research were to discover and characterize microbes capable of detoxifying DON under aerobic conditions and moderate temperatures. To identify microbes capable of detoxifying DON, five soil samples collected from Southern Ontario crop fields were tested for the ability to convert DON to a de-epoxidized derivative. One soil sample showed DON de-epoxidation activity under aerobic conditions at 22-24°C. To isolate the microbes responsible for DON detoxification (de-epoxidation) activity, the mixed culture was grown with antibiotics at 50ºC for 1.5 h and high concentrations of DON. The treatments resulted in the isolation of a pure DON de-epoxidating bacterial strain, ADS47, and phenotypic and molecular analyses identified the bacterium as Citrobacter freundii. The bacterium was also able to de-epoxidize and/or de-acetylate 10 other food-contaminating trichothecene mycotoxins. A fosmid genomic DNA library of strain ADS47 was prepared in E. coli and screened for DON detoxification activity. However, no library clone was found with DON detoxification activity. -
CHAPTER 1: General Introduction and Aims 1.1 the Genus Cronobacter: an Introduction
Diversity and virulence of the genus Cronobacter revealed by multilocus sequence typing (MLST) and comparative genomic analysis Susan Manju Joseph A thesis submitted in partial fulfilment of the requirements of Nottingham Trent University for the degree of Doctor of Philosophy July 2013 Experimental work contained in this thesis is original research carried out by the author, unless otherwise stated, in the School of Science and Technology at the Nottingham Trent University. No material contained herein has been submitted for any other degree, or at any other institution. This work is the intellectual property of the author. You may copy up to 5% of this work for private study, or personal, non-commercial research. Any re-use of the information contained within this document should be fully referenced, quoting the author, title, university, degree level and pagination. Queries or requests for any other use, or if a more substantial copy is required, should be directed in the owner(s) of the Intellectual Property Rights. Susan Manju Joseph ACKNOWLEDGEMENTS I would like to express my immense gratitude to my supervisor Prof. Stephen Forsythe for having offered me the opportunity to work on this very exciting project and for having been a motivating and inspiring mentor as well as friend through every stage of this PhD. His constant encouragement and availability for frequent meetings have played a very key role in the progress of this research project. I would also like to thank my co-supervisors, Dr. Alan McNally and Prof. Graham Ball for all the useful advice, guidance and participation they provided during the course of this PhD study. -
Hickman Catheter-Related Bacteremia with Kluyvera
Jpn. J. Infect. Dis., 61, 229-230, 2008 Short Communication Hickman Catheter-Related Bacteremia with Kluyvera cryocrescens: a Case Report Demet Toprak, Ahmet Soysal, Ozden Turel, Tuba Dal1, Özlem Özkan1, Guner Soyletir1 and Mustafa Bakir* Department of Pediatrics, Section of Pediatric Infectious Diseases and 1Department of Microbiology, Marmara University School of Medicine, Istanbul, Turkey (Received September 10, 2007. Accepted March 19, 2008) SUMMARY: This report describes a 2-year-old child with neuroectodermal tumor presenting with febrile neu- tropenia. Blood cultures drawn from the peripheral vein and Hickman catheter revealed Kluyvera cryocrescens growth. The Hickman catheter was removed and the patient was successfully treated with cefepime and amikacin. Isolation of Kluyvera spp. from clinical specimens is rare. This saprophyte microorganism may cause serious central venous catheter infections, especially in immunosuppressed patients. Clinicians should be aware of its virulence and resistance to many antibiotics. Central venous catheters (CVCs) are frequently used in confirmed by VITEK AMS (VITEK Systems, Hazelwood, Mo., patients with hematologic and oncologic disorders. Along with USA) and by API (Analytab Inc., Plainview, N.Y., USA). Anti- their increased use, short- and long-term complications of microbial susceptibility was assessed by the disc diffusion CVCs are more often being reported. The incidence of CVC method. K. cryocrescens was sensitive for cefotaxime, cefepime, infections correlates with duration of catheter usage, immuno- carbapenems, gentamycine, amikacin and ciprofloxacin. logic status of the patient, type of catheter utilized and mainte- Intravenous cefepime and amikacin were continued and the nance techniques employed. A definition of CVC infection CVC was removed. His echocardiogram was normal and has been difficult to establish because of problems differen- a repeat peripheral blood culture was sterile 48 h after the tiating contaminant from pathogen microorganisms. -
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INDEX CHAPTER NUMBER CHAPTER NAME PAGE Extraction of Fungal Chitosan and its Chapter-1 1-17 Advanced Application Isolation and Separation of Phenolics Chapter-2 using HPLC Tool: A Consolidate Survey 18-48 from the Plant System Advances in Microbial Genomics in Chapter-3 49-80 the Post-Genomics Era Advances in Biotechnology in the Chapter-4 81-94 Post Genomics era Plant Growth Promotion by Endophytic Chapter-5 Actinobacteria Associated with 95-107 Medicinal Plants Viability of Probiotics in Dairy Products: A Chapter-6 Review Focusing on Yogurt, Ice 108-132 Cream, and Cheese Published in: Dec 2018 Online Edition available at: http://openaccessebooks.com/ Reprints request: [email protected] Copyright: @ Corresponding Author Advances in Biotechnology Chapter 1 Extraction of Fungal Chitosan and its Advanced Application Sahira Nsayef Muslim1; Israa MS AL-Kadmy1*; Alaa Naseer Mohammed Ali1; Ahmed Sahi Dwaish2; Saba Saadoon Khazaal1; Sraa Nsayef Muslim3; Sarah Naji Aziz1 1Branch of Biotechnology, Department of Biology, College of Science, AL-Mustansiryiah University, Baghdad-Iraq 2Branch of Fungi and Plant Science, Department of Biology, College of Science, AL-Mustansiryiah University, Baghdad-Iraq 3Department of Geophysics, College of remote sensing and geophysics, AL-Karkh University for sci- ence, Baghdad-Iraq *Correspondense to: Israa MS AL-Kadmy, Department of Biology, College of Science, AL-Mustansiryiah University, Baghdad-Iraq. Email: [email protected] 1. Definition and Chemical Structure Biopolymer is a term commonly used for polymers which are synthesized by living organisms [1]. Biopolymers originate from natural sources and are biologically renewable, biodegradable and biocompatible. Chitin and chitosan are the biopolymers that have received much research interests due to their numerous potential applications in agriculture, food in- dustry, biomedicine, paper making and textile industry. -
Escherichia Vulneris As a Cause of Bacteremia in a Patient with Chronic
110 Correspondence 3. Auerbach O. Acute generalized miliary tuberculosis. Am J Pathol 12. Takhtani D, Gupta S, Suman K, Kakkar N, Challa S, Wig JD, et al. 1944;20:121—36. Radiology of pancreatic tuberculosis: a report of three cases. Am 4. Bhansali SK. Abdominal tuberculosis. Experience with 300 cases. J Gastroenterol 1996;91:1832—4. Am J Gastroenterol 1977;67:324—37. 13. Chen CH, Yang CC, Yeh YH, Yang JC, Chou DA. Pancreatic 5. Franco-Paredes C, Leonard M, Jurado R, Blumberg HM, Smith RM. tuberculosis with obstructive jaundice–—a case report. Am J Tuberculosis of the pancreas: report of two cases and review of Gastroenterol 1999;94:2534—6. the literature. Am J Med Sci 2002;323:54—8. 14. Varshney S, Johnson CD. Tuberculosis of the pancreas. Postgrad 6. Pombo F, Diaz Candamio MJ, Rodriguez E, Pombo S. Pancreatic Med J 1995;71:564—6. tuberculosis: CT findings. Abdom Imaging 1998;23:394—7. 7. Demir K, Kaymakoglu S, Besisik F, Durakoglu Z, Ozdil S, Kaplan Y, Ariel S. Eyal* et al. Solitary pancreatic tuberculosis in immunocompetent V.O.L. Karusseit patients mimicking pancreatic carcinoma. J Gastroenterol Hepa- Department of Surgery, University of Pretoria, tol 2001;16:1071—4. Pretoria, South Africa 8. Liu Q, He Z, Bie P.Solitary pancreatic tuberculous abscess mimick- ing pancreatic cystadenocarcinoma: a case report. BMC Gastro- *Corresponding author. Tel.: +27 82 375 4155 enterol 2003;3:1—6. E-mail address: [email protected] 9. Rezeig MA, Fashir BM, Al-Suhaibani H, Al-Fadda M, Amin T, Eisa H. -
The Shiga Toxin Producing Escherichia Coli
microorganisms Review An Overview of the Elusive Passenger in the Gastrointestinal Tract of Cattle: The Shiga Toxin Producing Escherichia coli Panagiotis Sapountzis 1,* , Audrey Segura 1,2 , Mickaël Desvaux 1 and Evelyne Forano 1 1 Université Clermont Auvergne, INRAE, UMR 0454 MEDIS, 63000 Clermont-Ferrand, France; [email protected] (A.S.); [email protected] (M.D.); [email protected] (E.F.) 2 Chr. Hansen Animal Health & Nutrition, 2970 Hørsholm, Denmark * Correspondence: [email protected] Received: 22 May 2020; Accepted: 7 June 2020; Published: 10 June 2020 Abstract: For approximately 10,000 years, cattle have been our major source of meat and dairy. However, cattle are also a major reservoir for dangerous foodborne pathogens that belong to the Shiga toxin-producing Escherichia coli (STEC) group. Even though STEC infections in humans are rare, they are often lethal, as treatment options are limited. In cattle, STEC infections are typically asymptomatic and STEC is able to survive and persist in the cattle GIT by escaping the immune defenses of the host. Interactions with members of the native gut microbiota can favor or inhibit its persistence in cattle, but research in this direction is still in its infancy. Diet, temperature and season but also industrialized animal husbandry practices have a profound effect on STEC prevalence and the native gut microbiota composition. Thus, exploring the native cattle gut microbiota in depth, its interactions with STEC and the factors that affect them could offer viable solutions against STEC carriage in cattle. Keywords: cattle; STEC colonization; microbiota; bacterial interactions 1. Introduction The domestication of cattle, approximately 10,000 years ago [1], brought a stable supply of protein to the human diet, which was instrumental for the building of our societies. -
Extensive Microbial Diversity Within the Chicken Gut Microbiome Revealed by Metagenomics and Culture
Extensive microbial diversity within the chicken gut microbiome revealed by metagenomics and culture Rachel Gilroy1, Anuradha Ravi1, Maria Getino2, Isabella Pursley2, Daniel L. Horton2, Nabil-Fareed Alikhan1, Dave Baker1, Karim Gharbi3, Neil Hall3,4, Mick Watson5, Evelien M. Adriaenssens1, Ebenezer Foster-Nyarko1, Sheikh Jarju6, Arss Secka7, Martin Antonio6, Aharon Oren8, Roy R. Chaudhuri9, Roberto La Ragione2, Falk Hildebrand1,3 and Mark J. Pallen1,2,4 1 Quadram Institute Bioscience, Norwich, UK 2 School of Veterinary Medicine, University of Surrey, Guildford, UK 3 Earlham Institute, Norwich Research Park, Norwich, UK 4 University of East Anglia, Norwich, UK 5 Roslin Institute, University of Edinburgh, Edinburgh, UK 6 Medical Research Council Unit The Gambia at the London School of Hygiene and Tropical Medicine, Atlantic Boulevard, Banjul, The Gambia 7 West Africa Livestock Innovation Centre, Banjul, The Gambia 8 Department of Plant and Environmental Sciences, The Alexander Silberman Institute of Life Sciences, Edmond J. Safra Campus, Hebrew University of Jerusalem, Jerusalem, Israel 9 Department of Molecular Biology and Biotechnology, University of Sheffield, Sheffield, UK ABSTRACT Background: The chicken is the most abundant food animal in the world. However, despite its importance, the chicken gut microbiome remains largely undefined. Here, we exploit culture-independent and culture-dependent approaches to reveal extensive taxonomic diversity within this complex microbial community. Results: We performed metagenomic sequencing of fifty chicken faecal samples from Submitted 4 December 2020 two breeds and analysed these, alongside all (n = 582) relevant publicly available Accepted 22 January 2021 chicken metagenomes, to cluster over 20 million non-redundant genes and to Published 6 April 2021 construct over 5,500 metagenome-assembled bacterial genomes. -
Citrobacter Braakii
& M cal ed ni ic li a l C G f e Trivedi et al., J Clin Med Genom 2015, 3:1 o n l o a m n r DOI: 10.4172/2472-128X.1000129 i u c s o Journal of Clinical & Medical Genomics J ISSN: 2472-128X ResearchResearch Article Article OpenOpen Access Access Phenotyping and 16S rDNA Analysis after Biofield Treatment on Citrobacter braakii: A Urinary Pathogen Mahendra Kumar Trivedi1, Alice Branton1, Dahryn Trivedi1, Gopal Nayak1, Sambhu Charan Mondal2 and Snehasis Jana2* 1Trivedi Global Inc., Eastern Avenue Suite A-969, Henderson, NV, USA 2Trivedi Science Research Laboratory Pvt. Ltd., Chinar Fortune City, Hoshangabad Rd., Madhya Pradesh, India Abstract Citrobacter braakii (C. braakii) is widespread in nature, mainly found in human urinary tract. The current study was attempted to investigate the effect of Mr. Trivedi’s biofield treatment on C. braakii in lyophilized as well as revived state for antimicrobial susceptibility pattern, biochemical characteristics, and biotype number. Lyophilized vial of ATCC strain of C. braakii was divided into two parts, Group (Gr.) I: control and Gr. II: treated. Gr. II was further subdivided into two parts, Gr. IIA and Gr. IIB. Gr. IIA was analysed on day 10 while Gr. IIB was stored and analysed on day 159 (Study I). After retreatment on day 159, the sample (Study II) was divided into three separate tubes. First, second and third tube was analysed on day 5, 10 and 15, respectively. All experimental parameters were studied using automated MicroScan Walk-Away® system. The 16S rDNA sequencing of lyophilized treated sample was carried out to correlate the phylogenetic relationship of C. -
Symposium Abstracts
Symposium Abstracts S1 Microbiological Environmental Testing and Validation: Leading-edge Issues for Low-moisture Foods JEAN-LOUIS CORDIER, Nestlé Nutrition, Operations/Quality Management, Vevey, Switzerland DONALD L. ZINK, Food and Drug Administration, Center for Food Safety and Applied Nutrition, College Park, MD, USA STEVEN J. GOODFELLOW, Deibel Laboratories, Inc., Gainesville, FL, USA MARK A. MOORMAN, Kellogg Company, Battle Creek, MI, USA ROBERT L. BUCHANAN, University of Maryland, Center for Food Safety and Security Systems, College Park, MD, USA Recent outbreaks of foodborne illness in several low-moisture foods (i.e., peanuts, peanut butter, cookie dough, etc.) have brought a growing public awareness of the complexities involved with the processing of this category of foods where traditional sanitation practices Symposium may not be applied or practical. As a result, the food industry and FDA have rallied to bring together best available thinking and practices necessary to assure control over foodborne hazards in such processes. However, one leading edge area that still remains a subject that offers opportunities for improvement is how control measures are verified in these processing environments through microbiological testing.This symposium will “zero in” on the challenges that face both food processors and food regulators in the area of environmental monitoring for these low moisture continuous processes. S2 Data Deluge, Interacting Players and Complex Networks in Food Sciences – Computational Tools to Tackle Food- related Complexities RéKA ALBERT, Pennsylvania State University, University Park, PA, USA MARK TAMPLIN, Food Safety Centre, Hobart, TAS, Australia GARY BARKER, Institute of Food Research, Norwich, United Kingdom JÓZSEF BARANYI, Institute of Food Research, Norwich, United Kingdom Food Science is one of the most multi-disciplinary sciences, consequently a holistic approach is not only desirable but rather a necessity, in order to integrate various food-related complex systems. -
Cross-Resistance to Phage Infection in Listeria Monocytogenes Serotype 1/2A Mutants and Preliminary Analysis of Their Wall Teichoic Acids
University of Tennessee, Knoxville TRACE: Tennessee Research and Creative Exchange Masters Theses Graduate School 8-2019 Cross-resistance to Phage Infection in Listeria monocytogenes Serotype 1/2a Mutants and Preliminary Analysis of their Wall Teichoic Acids Danielle Marie Trudelle University of Tennessee, [email protected] Follow this and additional works at: https://trace.tennessee.edu/utk_gradthes Recommended Citation Trudelle, Danielle Marie, "Cross-resistance to Phage Infection in Listeria monocytogenes Serotype 1/2a Mutants and Preliminary Analysis of their Wall Teichoic Acids. " Master's Thesis, University of Tennessee, 2019. https://trace.tennessee.edu/utk_gradthes/5512 This Thesis is brought to you for free and open access by the Graduate School at TRACE: Tennessee Research and Creative Exchange. It has been accepted for inclusion in Masters Theses by an authorized administrator of TRACE: Tennessee Research and Creative Exchange. For more information, please contact [email protected]. To the Graduate Council: I am submitting herewith a thesis written by Danielle Marie Trudelle entitled "Cross-resistance to Phage Infection in Listeria monocytogenes Serotype 1/2a Mutants and Preliminary Analysis of their Wall Teichoic Acids." I have examined the final electronic copy of this thesis for form and content and recommend that it be accepted in partial fulfillment of the equirr ements for the degree of Master of Science, with a major in Food Science. Thomas G. Denes, Major Professor We have read this thesis and recommend its acceptance: -
Bacteria Richness and Antibiotic-Resistance in Bats from a Protected Area in the Atlantic Forest of Southeastern Brazil
RESEARCH ARTICLE Bacteria richness and antibiotic-resistance in bats from a protected area in the Atlantic Forest of Southeastern Brazil VinõÂcius C. ClaÂudio1,2,3*, Irys Gonzalez2, Gedimar Barbosa1,2, Vlamir Rocha4, Ricardo Moratelli5, FabrõÂcio Rassy2 1 Centro de Ciências BioloÂgicas e da SauÂde, Universidade Federal de São Carlos, São Carlos, SP, Brazil, 2 FundacËão Parque ZooloÂgico de São Paulo, São Paulo, SP, Brazil, 3 Instituto de Biologia, Universidade Federal do Rio de Janeiro, Rio de Janeiro, RJ, Brazil, 4 Centro de Ciências AgraÂrias, Universidade Federal de São Carlos, Araras, SP, Brazil, 5 Fiocruz Mata AtlaÃntica, FundacËão Oswaldo Cruz, Rio de Janeiro, RJ, a1111111111 Brazil a1111111111 [email protected] a1111111111 * a1111111111 a1111111111 Abstract Bats play key ecological roles, also hosting many zoonotic pathogens. Neotropical bat microbiota is still poorly known. We speculate that their dietary habits strongly influence OPEN ACCESS their microbiota richness and antibiotic-resistance patterns, which represent growing and Citation: ClaÂudio VC, Gonzalez I, Barbosa G, Rocha serious public health and environmental issue. Here we describe the aerobic microbiota V, Moratelli R, Rassy F (2018) Bacteria richness richness of bats from an Atlantic Forest remnant in Southeastern Brazil, and the antibiotic- and antibiotic-resistance in bats from a protected area in the Atlantic Forest of Southeastern Brazil. resistance patterns of bacteria of clinical importance. Oral and rectal cavities of 113 bats PLoS ONE 13(9): e0203411. https://doi.org/ from Carlos Botelho State Park were swabbed. Samples were plated on 5% sheep blood 10.1371/journal.pone.0203411 and MacConkey agar and identified by the MALDI-TOF technique.