TRYPTOPHAN Tryptophan (Symbol Trp Or W) Is an Α-Amino Acid That Is Used in the Biosynthesis of Proteins
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(=Myrothecium) Roridum (Tode) L. Lombard & Crous Against the Squash
Journal of Plant Protection Research ISSN 1427-4345 ORIGINAL ARTICLE Pathogenicity of endogenous isolate of Paramyrothecium (=Myrothecium) roridum (Tode) L. Lombard & Crous against the squash beetle Epilachna chrysomelina (F.) Feyroz Ramadan Hassan1*, Nacheervan Majeed Ghaffar2, Lazgeen Haji Assaf3, Samir Khalaf Abdullah4 1 Department of Plant Protection, College of Agricultural Engineering Sciences, University of Duhok, Kurdistan Region, Duhok, Iraq 2 Duhok Research Center, College of Veterinary Medicine, Duhok University, Kurdistan Region, Duhok, Iraq 3 Plant Protection, General Directorate of Agriculture-Duhok, Kurdistan Region, Duhok, Iraq 4 Department of Medical Laboratory Techniques, Al-Noor University College, Nineva, Iraq Vol. 61, No. 1: 110–116, 2021 Abstract DOI: 10.24425/jppr.2021.136271 The squash beetle Epilachna chrysomelina (F.) is an important insect pest which causes se- vere damage to cucurbit plants in Iraq. The aims of this study were to isolate and character- Received: September 14, 2020 ize an endogenous isolate of Myrothecium-like species from cucurbit plants and from soil Accepted: December 8, 2020 in order to evaluate its pathogenicity to squash beetle. Paramyrothecium roridum (Tode) L. Lombard & Crous was isolated, its phenotypic characteristics were identified and ITS *Corresponding address: rDNA sequence analysis was done. The pathogenicity ofP. roridum strain (MT019839) was [email protected] evaluated at a concentration of 107 conidia · ml–1) water against larvae and adults of E. chry somelina under laboratory conditions. The results revealed the pathogenicity of the isolate to larvae with variations between larvae instar responses. The highest mortality percentage was reported when the adults were placed in treated litter and it differed significantly from adults treated directly with the pathogen. -
First Report of Albifimbria Verrucaria and Deconica Coprophila (Syn: Psylocybe Coprophila) from Field Soil in Korea
The Korean Journal of Mycology www.kjmycology.or.kr RESEARCH ARTICLE First Report of Albifimbria verrucaria and Deconica coprophila (Syn: Psylocybe coprophila) from Field Soil in Korea 1 1 1 1 1 Sun Kumar Gurung , Mahesh Adhikari , Sang Woo Kim , Hyun Goo Lee , Ju Han Jun 1 2 1,* Byeong Heon Gwon , Hyang Burm Lee , and Youn Su Lee 1 Division of Biological Resource Sciences, Kangwon National University, Chuncheon 24341, Korea 2 Divison of Food Technology, Biotechnology and Agrochemistry, College of Agriculture and Life Sciences, Chonnam National University, Gwangju 61186, Korea *Corresponding author: [email protected] ABSTRACT During a survey of fungal diversity in Korea, two fungal strains, KNU17-1 and KNU17-199, were isolated from paddy field soil in Yangpyeong and Sancheong, respectively, in Korea. These fungal isolates were analyzed based on their morphological characteristics and the molecular phylogenetic analysis of the internal transcribed spacer (ITS) rDNA sequences. On the basis of their morphology and phylogeny, KNU17-1 and KNU17-199 isolates were identified as Albifimbria verrucaria and Deconica coprophila, respectively. To the best of our knowledge, A. verrucaria and D. coprophila have not yet been reported in Korea. Thus, this is the first report of these species in Korea. Keywords: Albifimbria verrucaria, Deconica coprophila, Morphology OPEN ACCESS INTRODUCTION pISSN : 0253-651X The genus Albifimbria L. Lombard & Crous 2016 belongs to the family Stachybotryaceae of Ascomycotic eISSN : 2383-5249 fungi. These fungi are characterized by verrucose setae and conidia bearing a funnel-shaped mucoidal Kor. J. Mycol. 2019 September, 47(3): 209-18 https://doi.org/10.4489/KJM.20190025 appendage [1]. -
The Phylogeny of Plant and Animal Pathogens in the Ascomycota
Physiological and Molecular Plant Pathology (2001) 59, 165±187 doi:10.1006/pmpp.2001.0355, available online at http://www.idealibrary.com on MINI-REVIEW The phylogeny of plant and animal pathogens in the Ascomycota MARY L. BERBEE* Department of Botany, University of British Columbia, 6270 University Blvd, Vancouver, BC V6T 1Z4, Canada (Accepted for publication August 2001) What makes a fungus pathogenic? In this review, phylogenetic inference is used to speculate on the evolution of plant and animal pathogens in the fungal Phylum Ascomycota. A phylogeny is presented using 297 18S ribosomal DNA sequences from GenBank and it is shown that most known plant pathogens are concentrated in four classes in the Ascomycota. Animal pathogens are also concentrated, but in two ascomycete classes that contain few, if any, plant pathogens. Rather than appearing as a constant character of a class, the ability to cause disease in plants and animals was gained and lost repeatedly. The genes that code for some traits involved in pathogenicity or virulence have been cloned and characterized, and so the evolutionary relationships of a few of the genes for enzymes and toxins known to play roles in diseases were explored. In general, these genes are too narrowly distributed and too recent in origin to explain the broad patterns of origin of pathogens. Co-evolution could potentially be part of an explanation for phylogenetic patterns of pathogenesis. Robust phylogenies not only of the fungi, but also of host plants and animals are becoming available, allowing for critical analysis of the nature of co-evolutionary warfare. Host animals, particularly human hosts have had little obvious eect on fungal evolution and most cases of fungal disease in humans appear to represent an evolutionary dead end for the fungus. -
Myrothecium-Like New Species from Turfgrasses And Associated
A peer-reviewed open-access journal MycoKeys 51: 29–53Myrothecium-like (2019) new species from turfgrasses and associated rhizosphere 29 doi: 10.3897/mycokeys.51.31957 RESEARCH ARTICLE MycoKeys http://mycokeys.pensoft.net Launched to accelerate biodiversity research Myrothecium-like new species from turfgrasses and associated rhizosphere Junmin Liang1,*, Guangshuo Li1,2,*, Shiyue Zhou3, Meiqi Zhao4,5, Lei Cai1,3 1 State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beichen West Road, Chaoyang District, Beijing 100101, China 2 College of Life Sciences, Hebei University, Baoding, Hebei Pro- vince, 071002, China 3 College of Life Sciences, University of Chinese Academy of Sciences, Beijing 100049, China 4 College of Plant Protection, China Agricultural University, Beijing 100193, China 5 Forwardgroup Turf Service & Research Center, Wanning, Hainan Province, 571500, China Corresponding author: Lei Cai ([email protected]) Academic editor: I. Schmitt | Received 27 November 2018 | Accepted 26 February 2019 | Published 18 April 2019 Citation: Liang J, Li G, Zhou S, Zhao M, Cai L (2019) Myrothecium-like new species from turfgrasses and associated rhizosphere. MycoKeys 51: 29–53. https://doi.org/10.3897/mycokeys.51.31957 Abstract Myrothecium sensu lato includes a group of fungal saprophytes and weak pathogens with a worldwide distribution. Myrothecium s.l. includes 18 genera, such as Myrothecium, Septomyrothecium, Myxospora, all currently included in the family Stachybotryaceae. In this study, we identified 84 myrothecium-like strains isolated from turfgrasses and their rhizosphere. Five new species, i.e., Alfaria poae, Alf. humicola, Dimorphiseta acuta, D. obtusa, and Paramyrothecium sinense, are described based on their morphological and phylogenetic distinctions. -
Identification and Nomenclature of the Genus Penicillium
Downloaded from orbit.dtu.dk on: Dec 20, 2017 Identification and nomenclature of the genus Penicillium Visagie, C.M.; Houbraken, J.; Frisvad, Jens Christian; Hong, S. B.; Klaassen, C.H.W.; Perrone, G.; Seifert, K.A.; Varga, J.; Yaguchi, T.; Samson, R.A. Published in: Studies in Mycology Link to article, DOI: 10.1016/j.simyco.2014.09.001 Publication date: 2014 Document Version Publisher's PDF, also known as Version of record Link back to DTU Orbit Citation (APA): Visagie, C. M., Houbraken, J., Frisvad, J. C., Hong, S. B., Klaassen, C. H. W., Perrone, G., ... Samson, R. A. (2014). Identification and nomenclature of the genus Penicillium. Studies in Mycology, 78, 343-371. DOI: 10.1016/j.simyco.2014.09.001 General rights Copyright and moral rights for the publications made accessible in the public portal are retained by the authors and/or other copyright owners and it is a condition of accessing publications that users recognise and abide by the legal requirements associated with these rights. • Users may download and print one copy of any publication from the public portal for the purpose of private study or research. • You may not further distribute the material or use it for any profit-making activity or commercial gain • You may freely distribute the URL identifying the publication in the public portal If you believe that this document breaches copyright please contact us providing details, and we will remove access to the work immediately and investigate your claim. available online at www.studiesinmycology.org STUDIES IN MYCOLOGY 78: 343–371. Identification and nomenclature of the genus Penicillium C.M. -
Diversity and Bioprospection of Fungal Community Present in Oligotrophic Soil of Continental Antarctica
Extremophiles (2015) 19:585–596 DOI 10.1007/s00792-015-0741-6 ORIGINAL PAPER Diversity and bioprospection of fungal community present in oligotrophic soil of continental Antarctica Valéria M. Godinho · Vívian N. Gonçalves · Iara F. Santiago · Hebert M. Figueredo · Gislaine A. Vitoreli · Carlos E. G. R. Schaefer · Emerson C. Barbosa · Jaquelline G. Oliveira · Tânia M. A. Alves · Carlos L. Zani · Policarpo A. S. Junior · Silvane M. F. Murta · Alvaro J. Romanha · Erna Geessien Kroon · Charles L. Cantrell · David E. Wedge · Stephen O. Duke · Abbas Ali · Carlos A. Rosa · Luiz H. Rosa Received: 20 November 2014 / Accepted: 16 February 2015 / Published online: 26 March 2015 © Springer Japan 2015 Abstract We surveyed the diversity and capability of understanding eukaryotic survival in cold-arid oligotrophic producing bioactive compounds from a cultivable fungal soils. We hypothesize that detailed further investigations community isolated from oligotrophic soil of continen- may provide a greater understanding of the evolution of tal Antarctica. A total of 115 fungal isolates were obtained Antarctic fungi and their relationships with other organisms and identified in 11 taxa of Aspergillus, Debaryomyces, described in that region. Additionally, different wild pristine Cladosporium, Pseudogymnoascus, Penicillium and Hypo- bioactive fungal isolates found in continental Antarctic soil creales. The fungal community showed low diversity and may represent a unique source to discover prototype mol- richness, and high dominance indices. The extracts of ecules for use in drug and biopesticide discovery studies. Aspergillus sydowii, Penicillium allii-sativi, Penicillium brevicompactum, Penicillium chrysogenum and Penicil- Keywords Antarctica · Drug discovery · Ecology · lium rubens possess antiviral, antibacterial, antifungal, Fungi · Taxonomy antitumoral, herbicidal and antiprotozoal activities. -
Identification and Nomenclature of the Genus Penicillium
available online at www.studiesinmycology.org STUDIES IN MYCOLOGY 78: 343–371. Identification and nomenclature of the genus Penicillium C.M. Visagie1, J. Houbraken1*, J.C. Frisvad2*, S.-B. Hong3, C.H.W. Klaassen4, G. Perrone5, K.A. Seifert6, J. Varga7, T. Yaguchi8, and R.A. Samson1 1CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, NL-3584 CT Utrecht, The Netherlands; 2Department of Systems Biology, Building 221, Technical University of Denmark, DK-2800 Kgs. Lyngby, Denmark; 3Korean Agricultural Culture Collection, National Academy of Agricultural Science, RDA, Suwon, Korea; 4Medical Microbiology & Infectious Diseases, C70 Canisius Wilhelmina Hospital, 532 SZ Nijmegen, The Netherlands; 5Institute of Sciences of Food Production, National Research Council, Via Amendola 122/O, 70126 Bari, Italy; 6Biodiversity (Mycology), Agriculture and Agri-Food Canada, Ottawa, ON K1A0C6, Canada; 7Department of Microbiology, Faculty of Science and Informatics, University of Szeged, H-6726 Szeged, Közep fasor 52, Hungary; 8Medical Mycology Research Center, Chiba University, 1-8-1 Inohana, Chuo-ku, Chiba 260-8673, Japan *Correspondence: J. Houbraken, [email protected]; J.C. Frisvad, [email protected] Abstract: Penicillium is a diverse genus occurring worldwide and its species play important roles as decomposers of organic materials and cause destructive rots in the food industry where they produce a wide range of mycotoxins. Other species are considered enzyme factories or are common indoor air allergens. Although DNA sequences are essential for robust identification of Penicillium species, there is currently no comprehensive, verified reference database for the genus. To coincide with the move to one fungus one name in the International Code of Nomenclature for algae, fungi and plants, the generic concept of Penicillium was re-defined to accommodate species from other genera, such as Chromocleista, Eladia, Eupenicillium, Torulomyces and Thysanophora, which together comprise a large monophyletic clade. -
Mycosphere Essays 2. Myrothecium
Mycosphere 7 (1): 64–80 (2016) www.mycosphere.org ISSN 2077 7019 Article Doi 10.5943/mycosphere/7/1/7 Copyright © Guizhou Academy of Agricultural Sciences Mycosphere Essays 2. Myrothecium Chen Y1, Ran SF1, Dai DQ2, Wang Y1, Hyde KD2, Wu YM3 and Jiang YL1 1 Department of Plant Pathology, Agricultural College of Guizhou University, Huaxi District, Guiyang City, Guizhou Province 550025, China 2 Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand 3 Department of Plant Pathology, Shandong Agricultural University, Taian, 271018, China Chen Y, Ran SF, Dai DQ, Wang Y, Hyde KD, Wu YM, Jiang YL 2016 – Mycosphere Essays 2. Myrothecium. Mycosphere 7(1), 64–80, Doi 10.5943/mycosphere/7/1/7 Abstract Myrothecium (family Stachybotryaceae) has a worldwide distribution. Species in this genus were previously classified based on the morphology of the asexual morph, especially characters of conidia and conidiophores. Morphology-based identification alone is imprecise as there are few characters to differentiate species within the genus and, therefore, molecular sequence data is important in identifying species. In this review we discuss the history and significance of the genus, illustrate the morphology and discuss its role as a plant pathogen and biological control agent. We illustrate the type species Myrothecium inundatum with a line diagram and M. uttaradiensis with photo plates and discuss species numbers in the genus. The genus is re-evaluated based on molecular analyses of ITS and EF1-α sequence data, as well as a combined ATP6, EF1-α, LSU, RPB1 and SSU dataset. The combined gene analysis proved more suitable for resolving the taxonomic placement of this genus. -
Stachybotrys Musae Sp. Nov., S. Microsporus, and Memnoniella Levispora (Stachybotryaceae, Hypocreales) Found on Bananas in China and Thailand
life Article Stachybotrys musae sp. nov., S. microsporus, and Memnoniella levispora (Stachybotryaceae, Hypocreales) Found on Bananas in China and Thailand Binu C. Samarakoon 1,2,3, Dhanushka N. Wanasinghe 1,4,5, Rungtiwa Phookamsak 1,4,5,6 , Jayarama Bhat 7, Putarak Chomnunti 2,3, Samantha C. Karunarathna 1,4,5,6,* and Saisamorn Lumyong 6,8,9,* 1 CAS Key Laboratory for Plant Biodiversity and Biogeography of East Asia (KLPB), Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, China; [email protected] (B.C.S.); [email protected] (D.N.W.); [email protected] (R.P.) 2 Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand; [email protected] 3 School of Science, Mae Fah Luang University, Chiang Rai 57100, Thailand 4 World Agroforestry Centre, East and Central Asia, 132 Lanhei Road, Kunming 650201, China 5 Centre for Mountain Futures (CMF), Kunming Institute of Botany, Kunming 650201, China 6 Research Center of Microbial Diversity and Sustainable Utilization, Faculty of Sciences, Chiang Mai University, Chiang Mai 50200, Thailand 7 Formerly, Department of Botany, Goa University, Goa, Res: House No. 128/1-J, Azad Co-Op Housing Society, Curca, P.O. Goa Velha 403108, India; [email protected] 8 Department of Biology, Faculty of Science, Chiang Mai University, Chiang Mai 50200, Thailand 9 Academy of Science, The Royal Society of Thailand, Bangkok 10300, Thailand * Correspondence: [email protected] (S.C.K.); [email protected] (S.L.) Citation: Samarakoon, B.C.; Wanasinghe, D.N.; Phookamsak, R.; Abstract: A study was conducted to investigate saprobic fungal niches of Stachybotryaceae (Hypocre- Bhat, J.; Chomnunti, P.; Karunarathna, ales) associated with leaves of Musa (banana) in China and Thailand. -
Particle-Size Distributions and Seasonal Diversity of Allergenic and Pathogenic Fungi in Outdoor Air
The ISME Journal (2012) 6, 1801–1811 & 2012 International Society for Microbial Ecology All rights reserved 1751-7362/12 www.nature.com/ismej ORIGINAL ARTICLE Particle-size distributions and seasonal diversity of allergenic and pathogenic fungi in outdoor air Naomichi Yamamoto1,2, Kyle Bibby1, Jing Qian1,4, Denina Hospodsky1, Hamid Rismani-Yazdi1,5, William W Nazaroff3 and Jordan Peccia1 1Department of Chemical and Environmental Engineering, Yale University, New Haven, CT, USA; 2Japan Society for the Promotion of Science, Tokyo, Japan and 3Department of Civil and Environmental Engineering, University of California, Berkeley, CA, USA Fungi are ubiquitous in outdoor air, and their concentration, aerodynamic diameters and taxonomic composition have potentially important implications for human health. Although exposure to fungal allergens is considered a strong risk factor for asthma prevalence and severity, limitations in tracking fungal diversity in air have thus far prevented a clear understanding of their human pathogenic properties. This study used a cascade impactor for sampling, and quantitative real-time PCR plus 454 pyrosequencing for analysis to investigate seasonal, size-resolved fungal commu- nities in outdoor air in an urban setting in the northeastern United States. From the 20 libraries produced with an average of B800 internal transcribed spacer (ITS) sequences (total 15 326 reads), 12 864 and 11 280 sequences were determined to the genus and species levels, respectively, and 558 different genera and 1172 different species were identified, including allergens and infectious pathogens. These analyses revealed strong relationships between fungal aerodynamic diameters and features of taxonomic compositions. The relative abundance of airborne allergenic fungi ranged from 2.8% to 10.7% of total airborne fungal taxa, peaked in the fall, and increased with increasing aerodynamic diameter. -
Citizen Science Facilitates Phylogenetic Placement of Old Species of Non-Lichenised Pezizomycotina Based on Newly Collected Material
CZECH MYCOLOGY 72(2): 263–280, DECEMBER 16, 2020 (ONLINE VERSION, ISSN 1805-1421) Citizen science facilitates phylogenetic placement of old species of non-lichenised Pezizomycotina based on newly collected material 1 2 1 3 ONDŘEJ KOUKOL ,VIKTORIE HALASŮ ,LUKÁŠ JANOŠÍK ,PATRIK MLČOCH , 4 5 6 ADAM POLHORSKÝ ,MARKÉTA ŠANDOVÁ ,LUCIE ZÍBAROVÁ 1 Department of Botany, Faculty of Science, Charles University, Benátská 2, CZ-128 01 Praha 2, Czech Republic; [email protected] 2 Václava III. 10, CZ-771 00 Olomouc, Czech Republic 3 Department of Botany, Faculty of Science, Palacký University Olomouc, Šlechtitelů 27, CZ-783 71 Olomouc, Czech Republic 4 Pezinská 14, SK-903 01 Senec, Slovakia 5 Mycological Department, National Museum, Cirkusová 1740, CZ-193 00 Praha 9, Czech Republic 6 Resslova 26, CZ-400 01 Ústí nad Labem, Czech Republic Koukol O., Halasů V., Janošík L., Mlčoch P., Polhorský A., Šandová M., Zíbarová L. (2020): Citizen science facilitates phylogenetic placement of old species of non- lichenised Pezizomycotina based on newly collected material. – Czech Mycol. 72(2): 263–280. During the informal Spring Micromyco 2019 meeting, we tested how newly obtained molecular barcodes of common or poorly known saprotrophic microfungi from more or less targeted collec- tions may be useful for identification and taxonomic studies. Our aim was to obtain DNA sequences of fungi enabling their phylogenetic placement and routine identification in the future using molecu- lar barcoding. As a result, DNA of four species was sequenced for the first time, among them Leptosphaeria acuta, for which a new synonym L. urticae is proposed. The new combination Koorchaloma melaloma is proposed for a species previously known as Volutella melaloma and its new synonym is K. -
Isolation of Fungi and Identification
Chapter 2 Isolation of fungi from deep-sea sediments of the Central Indian Basin (CIB)and their identification using molecular approaches. Fungal diversity using culture-dependent approach 2.1 Introduction Deep-sea harbors various kinds of microorganisms comprising bacteria, archaea and fungi, known to play an important role in recycling of nutrients (Snelgrove et al, 1997). Among these, bacteria and archaea have been studied in detail (Stackebrandt et al, 1993; Urakawa et al, 1999; Li et al, 1999a; Takai and Horikoshi, 1999; Delong and Pace, 2001; Sogin et al, 2006; Hongxiang et al, 2008; Luna et al, 2009). Fungi have also been reported in several deep-sea environments (Nagahama et al, 2006), including hydrocasts near hydrothermal plumes from the Mid-Atlantic Ridge near the Azores (Gadanho and Sampaio, 2005) and in Pacific sea-floor sediments (Nagahama et al, 2001b). Fungi from both of these habitats were dominated by unicellular forms, commonly designated as yeasts. Many of the fungi isolated from the deep ocean have been previously undescribed species. For example, Nagahama and coworkers have described a number of novel species of yeasts from deep-sea sediments (Nagahama et al. 2001a, 2003, 2006). Undescribed species of yeasts were also identified from Atlantic hydrothermal plume waters (Gadanho and Sampaio, 2005). Presence of fungi in deep-sea sediments of the Central Indian Basin was reported by direct detection and immuno-fluorescence techniques (Damare et al, 2006). Fungi were also isolated from these deep-sea sediments using various isolation techniques. These cultures showed increase in biomass and germination of their spores under simulated deep-sea conditions of elevated hydrostatic pressure and low temperature (Damare, 2006).