The Double Helix
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INTERNATIONAL TABLES FOR CRYSTALLOGRAPHY Volume F CRYSTALLOGRAPHY OF BIOLOGICAL MACROMOLECULES Edited by MICHAEL G. ROSSMANN AND EDDY ARNOLD Advisors and Advisory Board Advisors: J. Drenth, A. Liljas. Advisory Board: U. W. Arndt, E. N. Baker, S. C. Harrison, W. G. J. Hol, K. C. Holmes, L. N. Johnson, H. M. Berman, T. L. Blundell, M. Bolognesi, A. T. Brunger, C. E. Bugg, K. K. Kannan, S.-H. Kim, A. Klug, D. Moras, R. J. Read, R. Chandrasekaran, P. M. Colman, D. R. Davies, J. Deisenhofer, T. J. Richmond, G. E. Schulz, P. B. Sigler,² D. I. Stuart, T. Tsukihara, R. E. Dickerson, G. G. Dodson, H. Eklund, R. GiegeÂ,J.P.Glusker, M. Vijayan, A. Yonath. Contributing authors E. E. Abola: The Department of Molecular Biology, The Scripps Research W. Chiu: Verna and Marrs McLean Department of Biochemistry and Molecular Institute, La Jolla, CA 92037, USA. [24.1] Biology, Baylor College of Medicine, Houston, Texas 77030, USA. [19.2] P. D. Adams: The Howard Hughes Medical Institute and Department of Molecular J. C. Cole: Cambridge Crystallographic Data Centre, 12 Union Road, Cambridge Biophysics and Biochemistry, Yale University, New Haven, CT 06511, USA. CB2 1EZ, England. [22.4] [18.2, 25.2.3] M. L. Connolly: 1259 El Camino Real #184, Menlo Park, CA 94025, USA. F. H. Allen: Cambridge Crystallographic Data Centre, 12 Union Road, Cambridge [22.1.2] CB2 1EZ, England. [22.4, 24.3] K. D. Cowtan: Department of Chemistry, University of York, York YO1 5DD, U. W. Arndt: Laboratory of Molecular Biology, Medical Research Council, Hills England. -
Francois Jacob Memorial
RETROSPECTIVE RETROSPECTIVE Francois Jacob memorial Arthur B. Pardee1 Department of Adult Oncology, Dana-Farber Institute, Boston, MA 02115 Dr. Francois Jacob is one of a handful of the DNA would integrate into the bacterial chro- 20th century’smostdistinguishedlifescien- mosome and remain dormant or, at other tists. His research with Dr. Jacques Monod, times, would kill the cell. like that of Watson and Crick, provided the Jacob’s next major contribution, in collab- foundations for understanding mechanisms oration with Dr. Jacques Monod, was to in- of genetic regulation of life processes such vestigate how a gene is regulated. Remark- as cell differentiation and defects in diseases. ably, native E. coli synthesize β-galactosidase Jacob joined the College de France in 1964 only when lactose is available. Some mutated and shared the Nobel Prize in Physiology bacteria can make the enzyme in the absence or Medicine 1965 with Jacques Monod of inducer. Monod’s initial idea was that and Andre Lwoff. He was elected to the these constitutive bacteria activate the gene National Academy of Sciences (NAS) USA by synthesizing an intracellular lactose-like in 1969. inducer molecule. Jacob was born in 1920 in a French Jewish To investigate this model, interrupted family; his grandfather was a four-star gen- mating was applied to bring the β-galactosi- eral. He began to study medicine before dase gene of a donor bacterium into a consti- World War II, in which he served as a mil- tutive receptor. According to the induction itary officer in the Free French Army and was model, the mated cell should produce en- badly wounded in an air raid. -
Insight from the Sociology of Science
CHAPTER 7 INSIGHT FROM THE SOCIOLOGY OF SCIENCE Science is What Scientists Do It has been argued a number of times in previous chapters that empirical adequacy is insufficient, in itself, to establish the validity of a theory: consistency with the observable ‘facts’ does not mean that a theory is true,1 only that it might be true, along with other theories that may also correspond with the observational data. Moreover, empirical inadequacy (theories unable to account for all the ‘facts’ in their domain) is frequently ignored by individual scientists in their fight to establish a new theory or retain an existing one. It has also been argued that because experi- ments are conceived and conducted within a particular theoretical, procedural and instrumental framework, they cannot furnish the theory-free data needed to make empirically-based judgements about the superiority of one theory over another. What counts as relevant evidence is, in part, determined by the theoretical framework the evidence is intended to test. It follows that the rationality of science is rather different from the account we usually provide for students in school. Experiment and observation are not as decisive as we claim. Additional factors that may play a part in theory acceptance include the following: intuition, aesthetic considerations, similarity and consistency among theories, intellectual fashion, social and economic influences, status of the proposer(s), personal motives and opportunism. Although the evidence may be inconclusive, scientists’ intuitive feelings about the plausibility or aptness of particular ideas will make it appear convincing. The history of science includes many accounts of scientists ‘sticking to their guns’ concerning a well-loved theory in the teeth of evidence to the contrary, and some- times in the absence of any evidence at all. -
The Joys and Burdens of Our Heroes 12/05/2021
More Fun Than Fun: The Joys and Burdens of Our Heroes 12/05/2021 An iconic photo of Konrad Lorenz with his favourite geese. Photo: Willamette Biology, CC BY-SA 2.0 This article is part of the ‘More Fun Than Fun‘ column by Prof Raghavendra Gadagkar. He will explore interesting research papers or books and, while placing them in context, make them accessible to a wide readership. RAGHAVENDRA GADAGKAR Among the books I read as a teenager, two completely changed my life. One was The Double Helix by Nobel laureate James D. Watson. This book was inspiring at many levels and instantly got me addicted to molecular biology. The other was King Solomon’s Ring by Konrad Lorenz, soon to be a Nobel laureate. The study of animal behaviour so charmingly and unforgettably described by Lorenz kindled in me an eternal love for the subject. The circumstances in which I read these two books are etched in my mind and may have partly contributed to my enthusiasm for them and their subjects. The Double Helix was first published in London in 1968 when I was a pre-university student (equivalent to 11th grade) at St Joseph’s college in Bangalore and was planning to apply for the prestigious National Science Talent Search Scholarship. By then, I had heard of the discovery of the double-helical structure of DNA and its profound implications. I was also tickled that this momentous discovery was made in 1953, the year of my birth. I saw the announcement of Watson’s book on the notice board in the British Council Library, one of my frequent haunts. -
Biochemistrystanford00kornrich.Pdf
University of California Berkeley Regional Oral History Office University of California The Bancroft Library Berkeley, California Program in the History of the Biosciences and Biotechnology Arthur Kornberg, M.D. BIOCHEMISTRY AT STANFORD, BIOTECHNOLOGY AT DNAX With an Introduction by Joshua Lederberg Interviews Conducted by Sally Smith Hughes, Ph.D. in 1997 Copyright 1998 by The Regents of the University of California Since 1954 the Regional Oral History Office has been interviewing leading participants in or well-placed witnesses to major events in the development of Northern California, the West, and the Nation. Oral history is a method of collecting historical information through tape-recorded interviews between a narrator with firsthand knowledge of historically significant events and a well- informed interviewer, with the goal of preserving substantive additions to the historical record. The tape recording is transcribed, lightly edited for continuity and clarity, and reviewed by the interviewee. The corrected manuscript is indexed, bound with photographs and illustrative materials, and placed in The Bancroft Library at the University of California, Berkeley, and in other research collections for scholarly use. Because it is primary material, oral history is not intended to present the final, verified, or complete narrative of events. It is a spoken account, offered by the interviewee in response to questioning, and as such it is reflective, partisan, deeply involved, and irreplaceable. ************************************ All uses of this manuscript are covered by a legal agreement between The Regents of the University of California and Arthur Kornberg, M.D., dated June 18, 1997. The manuscript is thereby made available for research purposes. All literary rights in the manuscript, including the right to publish, are reserved to The Bancroft Library of the University of California, Berkeley. -
Mobile DNA Elements in Shigella Flexneri and Emergence of An- Tibiotic Resistance Crisis
International Journal of Genomics and Data Mining Palchauduri S, et al. Int J Genom Data Min 01: 111. Research Article DOI: 10.29011/2577-0616.000111 Mobile DNA Elements in Shigella flexneri and Emergence of An- tibiotic Resistance Crisis Sunil Palchaudhuri1*, Anubha Palchaudhuri2, Archita Biswas2 1Department of Immunology and Microbiology, Wayne State University School of Medicine, Detroit, USA 2Atlanta Health Centre, Kolkata, India *Corresponding author: Sunil Palchaudhuri,Department of Immunology and Microbiology, Wayne State University School of Medicine, 540 E Canfield St, Detroit, MI 48201, USA. Tel: +13135771335; Email: [email protected] Citation:Palchaudhuri S, Palchaudhuri A, Biswas A (2017)Mobile DNA Elements in Shigella flexneri and Emergence of Antibiotic Resistance Crisis. Int J Genom Data Min 01: 111. DOI: 10.29011/2577-0616.000111 Received Date: 18October, 2017; Accepted Date: 23 October, 2017; Published Date: 30 October, 2017 Introduction F Plasmid-Lederberg’s Fertility factor F of E. coli K-12. Prokaryotic mobile DNA elements were initially observed by • 100 Kb. Nobel Prize Winner Professor Barbara McClintock in 1983. Both • ori F-origin of F plasmid replication. (With the sequence for IS and Tn elements are defined as mobile DNA elements capable dna A gene to function) of inserting into many different sites of a single chromosome or different chromosomes as discrete, non-permuted DNA segments • rep-replication functions. [1,2]. In 1952 Dr Joshua Lederberg (a noble prize winner of 1958) • IS-insertion sequence (IS2, IS3 and IS1copies present in the has shown the presence of such elements IS1, IS2, IS3 and Tn host E. coli K-12. -
Cambridge's 92 Nobel Prize Winners Part 2 - 1951 to 1974: from Crick and Watson to Dorothy Hodgkin
Cambridge's 92 Nobel Prize winners part 2 - 1951 to 1974: from Crick and Watson to Dorothy Hodgkin By Cambridge News | Posted: January 18, 2016 By Adam Care The News has been rounding up all of Cambridge's 92 Nobel Laureates, celebrating over 100 years of scientific and social innovation. ADVERTISING In this installment we move from 1951 to 1974, a period which saw a host of dramatic breakthroughs, in biology, atomic science, the discovery of pulsars and theories of global trade. It's also a period which saw The Eagle pub come to national prominence and the appearance of the first female name in Cambridge University's long Nobel history. The Gender Pay Gap Sale! Shop Online to get 13.9% off From 8 - 11 March, get 13.9% off 1,000s of items, it highlights the pay gap between men & women in the UK. Shop the Gender Pay Gap Sale – now. Promoted by Oxfam 1. 1951 Ernest Walton, Trinity College: Nobel Prize in Physics, for using accelerated particles to study atomic nuclei 2. 1951 John Cockcroft, St John's / Churchill Colleges: Nobel Prize in Physics, for using accelerated particles to study atomic nuclei Walton and Cockcroft shared the 1951 physics prize after they famously 'split the atom' in Cambridge 1932, ushering in the nuclear age with their particle accelerator, the Cockcroft-Walton generator. In later years Walton returned to his native Ireland, as a fellow of Trinity College Dublin, while in 1951 Cockcroft became the first master of Churchill College, where he died 16 years later. 3. 1952 Archer Martin, Peterhouse: Nobel Prize in Chemistry, for developing partition chromatography 4. -
2002 President's Essay
from the 2002 Annual Report DIRECTOR’S REPORT Much has been written about the extraordinary events that took place in Cambridge, Eng - land, 50 years ago that changed biology forever. The discovery of the double-helical struc - ture of DNA ushered in an immediate future for understanding how genes are inherited, how genetic information is read, and how mutations are fixed in our genome. 2003 will ap - propriately celebrate the discovery and the stunning developments that have occurred since, not only in biology and medicine, but also in fields unanticipated by Jim Watson and Francis Crick when they proposed the double helix. DNA-based forensics is but one example, having an impact in the law to such an extent that some states are now reviewing whether capital punishment should be continued because of the possibility of irreversibly condemning the innocent. In all the writings and lore about the double-helix discovery, one of the little discussed points that struck me was the freedom that both Jim and Francis had to pursue what they felt was important, namely, the structure of DNA. Having completed graduate studies in the United States, Jim Watson went to Copenhagen to continue to become a biochemist in the hope that he might understand the gene, but he soon realized that biochemistry was not his forte. Most importantly, after hearing Maurice Wilkins talk about his early structural studies on DNA, Jim had the foresight that understanding DNA structure might help un - derstand the gene and therefore he decided to move to Cambridge, then, as now, a center of the field now known as structural biology. -
Quiet Debut'' of the Double Helix: a Bibliometric and Methodological
Journal of the History of Biology Ó Springer 2009 DOI 10.1007/s10739-009-9183-2 Revisiting the ‘‘Quiet Debut’’ of the Double Helix: A Bibliometric and Methodological note on the ‘‘Impact’’ of Scientific Publications YVES GINGRAS De´partement d’histoire Universite´ du Que´bec a` Montre´al C.P. 8888, Suc. Centre-Ville Montreal, QC H3C-3P8 Canada E-mail: [email protected] Abstract. The object of this paper is two-fold: first, to show that contrary to what seem to have become a widely accepted view among historians of biology, the famous 1953 first Nature paper of Watson and Crick on the structure of DNA was widely cited – as compared to the average paper of the time – on a continuous basis from the very year of its publication and over the period 1953–1970 and that the citations came from a wide array of scientific journals. A systematic analysis of the bibliometric data thus shows that Watson’s and Crick’s paper did in fact have immediate and long term impact if we define ‘‘impact’’ in terms of comparative citations with other papers of the time. In this precise sense it did not fall into ‘‘relative oblivion’’ in the scientific community. The second aim of this paper is to show, using the case of the reception of the Watson–Crick and Jacob–Monod papers as concrete examples, how large scale bibliometric data can be used in a sophisticated manner to provide information about the dynamic of the scientific field as a whole instead of limiting the analysis to a few major actors and generalizing the result to the whole community without further ado. -
Science in Action
SCIENCE IN ACTION How to follow scientists and engineers through society Bruno Latour Harvard UnlvetSHy Press Cambridge, Massachusetts 1987 INTRODUCTION Opening Pandora's Black Box Scene 1: On a cold and sunny morning in October 1985, John Whittaker entered his office in the molecular biology building of the Institut Pasteur in Paris and switched on his Eclipse MV/8000 computer. A few seconds after loading the special programs he had written, a three-dimensional picture of the DNA double helix flashed onto the screen. John, a visiting computer scientist, had been invited by the Institute to write programs that could produce three-dimensional images of the coils of DNA and relate them to the thousands of new nucleic acid sequences pouring out every year into the journals and data banks. 'Nice picture, eh?' said his boss, Pierre, who was just entering the office. 'Yes, good machine too,' answered John. Scene 2: In 1951 in the Cavendish laboratory at Cambridge, England, the X-ray pictures of crystallised deoxyribonucleic acid were not 'nice pictures' on a computer screen. The two young researchers, Jim Watson and Francis Crick1, had a hard time obtaining them from Maurice Wilkins and Rosalind Franklin in London. It was impossible yet to decide if the form of the acid was a triple or a double helix, if the phosphate bonds were at the inside or at the outside of the molecule, or indeed if it was an helix at all. It did not matter much to their boss, Sir Francis Bragg, since the two were not supposed to be working on DNA anyway, but it mattered a lot to them, especially since Linus Pauling, the famous chemist, was said to be about to uncover the structure of DNA in a few months. -
A Short History of DNA Technology 1865 - Gregor Mendel the Father of Genetics
A Short History of DNA Technology 1865 - Gregor Mendel The Father of Genetics The Augustinian monastery in old Brno, Moravia 1865 - Gregor Mendel • Law of Segregation • Law of Independent Assortment • Law of Dominance 1865 1915 - T.H. Morgan Genetics of Drosophila • Short generation time • Easy to maintain • Only 4 pairs of chromosomes 1865 1915 - T.H. Morgan •Genes located on chromosomes •Sex-linked inheritance wild type mutant •Gene linkage 0 •Recombination long aristae short aristae •Genetic mapping gray black body 48.5 body (cross-over maps) 57.5 red eyes cinnabar eyes 67.0 normal wings vestigial wings 104.5 red eyes brown eyes 1865 1928 - Frederick Griffith “Rough” colonies “Smooth” colonies Transformation of Streptococcus pneumoniae Living Living Heat killed Heat killed S cells mixed S cells R cells S cells with living R cells capsule Living S cells in blood Bacterial sample from dead mouse Strain Injection Results 1865 Beadle & Tatum - 1941 One Gene - One Enzyme Hypothesis Neurospora crassa Ascus Ascospores placed X-rays Fruiting on complete body medium All grow Minimal + amino acids No growth Minimal Minimal + vitamins in mutants Fragments placed on minimal medium Minimal plus: Mutant deficient in enzyme that synthesizes arginine Cys Glu Arg Lys His 1865 Beadle & Tatum - 1941 Gene A Gene B Gene C Minimal Medium + Citruline + Arginine + Ornithine Wild type PrecursorEnz A OrnithineEnz B CitrulineEnz C Arginine Metabolic block Class I Precursor OrnithineEnz B CitrulineEnz C Arginine Mutants Class II Mutants PrecursorEnz A Ornithine -
Eighty Years of Fighting Against Cancer in Serbia Ovarian Cancer Vaccine
News Eighty years of fighting against cancer Recent study by Kunle Odunsi et al., Roswell Park Cancer Institute, Buffalo, in Serbia New York, USA, showed an effects of vaccine based on NY-ESO-1, a „cancer This year on December 10th, Serbian society for the fight against cancer has testis“ antigen in preventing the recurrence of ovarian cancer. NY-ESO-1 is a ovarian celebrated the great jubilee - 80 years of its foundation. The celebration took „cancer-testis“ antigen expressed in epithelial cancer (EOC) and is place in Crystal Room of Belgrade’s Hyatt hotel, gathering many distinguished among the most immunogenic tumor antigens defined to date. presence + guests from the country and abroad. This remarkable event has been held Author’s previous study point to the role of of intraepithelial CD8 - under the auspices of the President of Republic of Serbia, Mr. Boris Tadić. infiltrating T lymphocytes in tumors that was associated with improved survival of The whole ceremony was presided by Prof. Dr. Slobodan Čikarić, actual presi- patients with the disease. The NY-ESO-1 peptide epitope, ESO157–170, is recog- + + dent of Society, who greeted guests and wished them a warm welcome. Than nized by HLA-DP4-restricted CD4 T cells and HLA-A2- and A24-restricted CD8 + followed the speech of Serbian health minister, Prof. Dr. Tomica Milosavljević T cells. To test whether providing cognate helper CD4 T cells would enhance who pointed out the importance of preventive measures and public education the antitumor immune response, Odunsi et al., conducted a phase I clinical trial along with timely diagnosis and multidisciplinary treatment in global fight of immunization with ESO157–170 mixed with incomplete Freund's adjuvant + against cancer in Serbia.