The Guiana Shield
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Selection, Constraint, and Adaptation in the Visual Genes of Neotropical Cichlid Fishes and Other Vertebrates
SELECTION, CONSTRAINT, AND ADAPTATION IN THE VISUAL GENES OF NEOTROPICAL CICHLID FISHES AND OTHER VERTEBRATES by Frances Elisabeth Hauser A thesis submitted in conformity with the requirements for the degree of Doctor of Philosophy Ecology and Evolutionary Biology University of Toronto © Copyright by Frances E. Hauser 2018 SELECTION, CONSTRAINT, AND ADAPTATION IN THE VISUAL GENES OF NEOTROPICAL CICHLID FISHES AND OTHER VERTEBRATES Frances E. Hauser Doctor of Philosophy, 2018 Department of Ecology and Evolutionary Biology University of Toronto 2018 ABSTRACT The visual system serves as a direct interface between an organism and its environment. Studies of the molecular components of the visual transduction cascade, in particular visual pigments, offer an important window into the relationship between genetic variation and organismal fitness. In this thesis, I use molecular evolutionary models as well as protein modeling and experimental characterization to assess the role of variable evolutionary rates on visual protein function. In Chapter 2, I review recent work on the ecological and evolutionary forces giving rise to the impressive variety of adaptations found in visual pigments. In Chapter 3, I use interspecific vertebrate and mammalian datasets of two visual genes (RH1 or rhodopsin, and RPE65, a retinoid isomerase) to assess different methods for estimating evolutionary rate across proteins and the reliability of inferring evolutionary conservation at individual amino acid sites, with a particular emphasis on sites implicated in impaired protein function. ii In Chapters 4, and 5, I narrow my focus to devote particular attention to visual pigments in Neotropical cichlids, a highly diverse clade of fishes distributed across South and Central America. -
Two New Species of Australoheros (Teleostei: Cichlidae), with Notes on Diversity of the Genus and Biogeography of the Río De La Plata Basin
Zootaxa 2982: 1–26 (2011) ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ Article ZOOTAXA Copyright © 2011 · Magnolia Press ISSN 1175-5334 (online edition) Two new species of Australoheros (Teleostei: Cichlidae), with notes on diversity of the genus and biogeography of the Río de la Plata basin OLDŘICH ŘÍČAN1, LUBOMÍR PIÁLEK1, ADRIANA ALMIRÓN2 & JORGE CASCIOTTA2 1Department of Zoology, Faculty of Science, University of South Bohemia, Branišovská 31, 370 05, České Budějovice, Czech Republic. E-mail: [email protected], [email protected] 2División Zoología Vertebrados, Facultad de Ciencias Naturales y Museo, UNLP, Paseo del Bosque, 1900 La Plata, Argentina. E-mail: [email protected], [email protected] Abstract Two new species of Australoheros Říčan and Kullander are described. Australoheros ykeregua sp. nov. is described from the tributaries of the río Uruguay in Misiones province, Argentina. Australoheros angiru sp. nov. is described from the tributaries of the upper rio Uruguai and middle rio Iguaçu in Brazil. The two new species are not closely related, A. yke- regua is the sister species of A. forquilha Říčan and Kullander, while A. angiru is the sister species of A. minuano Říčan and Kullander. The diversity of the genus Australoheros is reviewed using morphological and molecular phylogenetic analyses. These analyses suggest that the described species diversity of the genus in the coastal drainages of SE Brazil is overestimated and that many described species are best undestood as representing cases of intraspecific variation. The dis- tribution patterns of Australoheros species in the Uruguay and Iguazú river drainages point to historical connections be- tween today isolated river drainages (the lower río Iguazú with the arroyo Urugua–í, and the middle rio Iguaçu with the upper rio Uruguai). -
Ficha Catalográfica Online
UNIVERSIDADE ESTADUAL DE CAMPINAS INSTITUTO DE BIOLOGIA – IB SUZANA MARIA DOS SANTOS COSTA SYSTEMATIC STUDIES IN CRYPTANGIEAE (CYPERACEAE) ESTUDOS FILOGENÉTICOS E SISTEMÁTICOS EM CRYPTANGIEAE CAMPINAS, SÃO PAULO 2018 SUZANA MARIA DOS SANTOS COSTA SYSTEMATIC STUDIES IN CRYPTANGIEAE (CYPERACEAE) ESTUDOS FILOGENÉTICOS E SISTEMÁTICOS EM CRYPTANGIEAE Thesis presented to the Institute of Biology of the University of Campinas in partial fulfillment of the requirements for the degree of PhD in Plant Biology Tese apresentada ao Instituto de Biologia da Universidade Estadual de Campinas como parte dos requisitos exigidos para a obtenção do Título de Doutora em Biologia Vegetal ESTE ARQUIVO DIGITAL CORRESPONDE À VERSÃO FINAL DA TESE DEFENDIDA PELA ALUNA Suzana Maria dos Santos Costa E ORIENTADA PELA Profa. Maria do Carmo Estanislau do Amaral (UNICAMP) E CO- ORIENTADA pelo Prof. William Wayt Thomas (NYBG). Orientadora: Maria do Carmo Estanislau do Amaral Co-Orientador: William Wayt Thomas CAMPINAS, SÃO PAULO 2018 Agência(s) de fomento e nº(s) de processo(s): CNPq, 142322/2015-6; CAPES Ficha catalográfica Universidade Estadual de Campinas Biblioteca do Instituto de Biologia Mara Janaina de Oliveira - CRB 8/6972 Costa, Suzana Maria dos Santos, 1987- C823s CosSystematic studies in Cryptangieae (Cyperaceae) / Suzana Maria dos Santos Costa. – Campinas, SP : [s.n.], 2018. CosOrientador: Maria do Carmo Estanislau do Amaral. CosCoorientador: William Wayt Thomas. CosTese (doutorado) – Universidade Estadual de Campinas, Instituto de Biologia. Cos1. Savanas. 2. Campinarana. 3. Campos rupestres. 4. Filogenia - Aspectos moleculares. 5. Cyperaceae. I. Amaral, Maria do Carmo Estanislau do, 1958-. II. Thomas, William Wayt, 1951-. III. Universidade Estadual de Campinas. Instituto de Biologia. IV. Título. -
Apistogramma Ortegai (Teleostei: Cichlidae), a New Species of Cichlid Fish from the Ampyiacu River in the Peruvian Amazon Basin
Zootaxa 3869 (4): 409–419 ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ Article ZOOTAXA Copyright © 2014 Magnolia Press ISSN 1175-5334 (online edition) http://dx.doi.org/10.11646/zootaxa.3869.4.5 http://zoobank.org/urn:lsid:zoobank.org:pub:CB38DF91-EC70-4B17-9B9A-18C949431C1D Apistogramma ortegai (Teleostei: Cichlidae), a new species of cichlid fish from the Ampyiacu River in the Peruvian Amazon basin RICARDO BRITZKE1, CLAUDIO OLIVEIRA1 & SVEN O. KULLANDER2 1Universidade Estadual Paulista, Instituto de Biociências, Departamento de Morfologia, Rubião Jr. s/n. CEP 18618-970. Botucatu, SP, Brazil. E-mail: [email protected] 2Department of Zoology, Swedish Museum of Natural History, PO Box 50007, SE-104 05 Stockholm, Sweden Abstract Apistogramma ortegai, new species, is described from small streams tributaries of the Ampiyacu River near Pebas, in east- ern Peru. It belongs to the Apistogramma regani species group and is distinguished from all other species of Apistogramma by the combination of contiguous caudal spot to bar 7, presence of abdominal stripes, short dorsal-fin lappets in both sexes, absence of vertical stripes on the caudal fin, and reduced number of predorsal and prepelvic scales. Key words: Geophaginae, Geophagini, Amazonia, Freshwater, Morphology, Taxonomy Resumen Apistogramma ortegai, nueva especie, es descrita desde pequeños tributario del rio Ampiyacu cerca de Pebas, en el este del Perú. Pertenece al grupo de especies de A. regani y es distinguido de todas las otras especies de Apistograma por la combinación de la barra 7 conectada con una mancha en la aleta caudal, presencia de líneas abdominales, membranas de la aleta dorsal cortas en ambos sexos, ausencia de líneas verticales en la aleta caudal, y reducido número de escamas pre- dorsales y prepélvicas. -
06 Staeck Final Version 1.Indd
Zoologische Abhandlungen (Dresden) 56: 991–971–97 91 Geophagus gottwaldi sp. n. - a new species of cichlid fi sh (Teleostei: Perciformes: Cichlidae) from the drainage of the upper río Orinoco in Venezuela INGO SCHINDLER 1 & WOLFGANG STAECK 2 1 Warthestr. 53a, D-12051 Berlin 2 Auf dem Grat 41a, D-14195 Berlin Abstract. Geophagus gottwaldi sp. n. is described from the drainage of the upper río Orinoco in the Estado Amazonas in southwestern Venezuela. It can be distinguished from all other described Geophagus species by the following combination of characters: a prominent dark infraorbital stripe, caudal fi n with a pattern of roundish light spots, a rectangular midlateral spot, 34–36 scales in a lateral line and total length of more than 20 cm. Resumo. Geophagus gottwaldi, espécie nova, é descrita da drenagem do alto rio Orinoco (Estado Amazonas, Venezuela). Geophagus gottwaldi é distinta das demais espécies descritas do gênero Geophagus pela combinação das seguintes caracteristicas: faixa intraorbital completa, nadadeira caudal com manchas claras arredondadas, uma grande mancha rectangular preta no meio de corpo, 34–36 escamas no linha lateral e tamanho grande (TL > 20 cm). Resumen. Se describe una nueva especie de cíclido, Geophagus gottwaldi, de la cuenca del alto río Orinoco (Estado Amazonas de Venezuela). La nueva especie se distingue de todas las demás especies del género Geophagus por la siguiente combinación de carácteres diagnósticos: una banda oscura conspicua intraorbital que extiende desde el ojo hasta el ángulo del preopérculo, aleta caudal con manchas blancas redondas, una grande mancha rectangular en el centro del cuerpo, 34–36 escamas en la serie longitudinal y tamaño grande (TL >20 cm). -
In Search of the Amazon: Brazil, the United States, and the Nature of A
IN SEARCH OF THE AMAZON AMERICAN ENCOUNTERS/GLOBAL INTERACTIONS A series edited by Gilbert M. Joseph and Emily S. Rosenberg This series aims to stimulate critical perspectives and fresh interpretive frameworks for scholarship on the history of the imposing global pres- ence of the United States. Its primary concerns include the deployment and contestation of power, the construction and deconstruction of cul- tural and political borders, the fluid meanings of intercultural encoun- ters, and the complex interplay between the global and the local. American Encounters seeks to strengthen dialogue and collaboration between histo- rians of U.S. international relations and area studies specialists. The series encourages scholarship based on multiarchival historical research. At the same time, it supports a recognition of the represen- tational character of all stories about the past and promotes critical in- quiry into issues of subjectivity and narrative. In the process, American Encounters strives to understand the context in which meanings related to nations, cultures, and political economy are continually produced, chal- lenged, and reshaped. IN SEARCH OF THE AMAzon BRAZIL, THE UNITED STATES, AND THE NATURE OF A REGION SETH GARFIELD Duke University Press Durham and London 2013 © 2013 Duke University Press All rights reserved Printed in the United States of America on acid- free paper ♾ Designed by Heather Hensley Typeset in Scala by Tseng Information Systems, Inc. Library of Congress Cataloging-in - Publication Data Garfield, Seth. In search of the Amazon : Brazil, the United States, and the nature of a region / Seth Garfield. pages cm—(American encounters/global interactions) Includes bibliographical references and index. -
Anura: Dendrobatidae: Anomaloglossus) from the Orinoquian Rainforest, Southern Venezuela
TERMS OF USE This pdf is provided by Magnolia Press for private/research use. Commercial sale or deposition in a public library or website is prohibited. Zootaxa 2413: 37–50 (2010) ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ Article ZOOTAXA Copyright © 2010 · Magnolia Press ISSN 1175-5334 (online edition) A new dendrobatid frog (Anura: Dendrobatidae: Anomaloglossus) from the Orinoquian rainforest, southern Venezuela CÉSAR L. BARRIO-AMORÓS1,4, JUAN CARLOS SANTOS2 & OLGA JOVANOVIC3 1,4 Fundación AndígenA, Apartado postal 210, 5101-A Mérida, Venezuela 2University of Texas at Austin, Integrative Biology, 1 University Station C0930 Austin TX 78705, USA 3Division of Evolutionary Biology, Technical University of Braunschweig, Spielmannstr 8, 38106 Braunschweig, Germany 4Corresponding author. E-mail: [email protected]; [email protected] Abstract A new species of Anomaloglossus is described from the Venezuelan Guayana; it is the 21st described species of Anomaloglossus from the Guiana Shield, and the 15th from Venezuela. This species inhabits rainforest on granitic substrate on the northwestern edge of the Guiana Shield (Estado Amazonas, Venezuela). The new species is distinguished from congeners by sexual dimorphism, its unique male color pattern (including two bright orange parotoid marks and two orange paracloacal spots on dark brown background), call characteristics and other morphological features. Though to the new species is known only from the northwestern edge of the Guiana Shield, its distribution may be more extensive, as there are no significant biogeographic barriers isolating the type locality from the granitic lowlands of Venezuela. Key words: Amphibia, Dendrobatidae, Anomaloglossus, Venezuela, Guiana Shield Resumen Se describe una nueva especie de Anomaloglossus de la Guayana venezolana, que es la vigesimoprimera descrita del Escudo Guayanés, y la decimoquinta para Venezuela. -
Anura: Dendrobatidae: Colostethus) from Aprada Tepui, Southern Venezuela
Zootaxa 1110: 59–68 (2006) ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ ZOOTAXA 1110 Copyright © 2006 Magnolia Press ISSN 1175-5334 (online edition) A new dendrobatid frog (Anura: Dendrobatidae: Colostethus) from Aprada tepui, southern Venezuela CÉSAR L. BARRIO-AMORÓS Fundación AndígenA., Apartado postal 210, 5101-A Mérida, Venezuela; E-mail: [email protected]; [email protected] Abstract A new species of Colostethus is described from Venezuelan Guayana. It inhabits the slopes of Aprada tepui, a sandstone table mountain in southern Venezuela. The new species is distinguished from close relatives by its particular pattern, absence of fringes on fingers, presence of a lingual process, and yellow and orange ventral coloration. It is the 18th described species of Colostethus from Venezuelan Guayana. Key words: Amphibia, Dendrobatidae, Colostethus breweri sp. nov., Venezuelan Guayana Introduction In recent years, knowledge of the dendrobatid fauna of the Venezuelan Guayana has increased remarkably. While La Marca (1992) referred four species, Barrio-Amorós et al. (2004) reported 17 species; one more species will appear soon (Barrio-Amorós & Brewer- Carías in press). The discovery of new species has coincided with progressive exploration of the Guiana Shield, one of the most inaccessible and unknown areas in the world. Barrio- Amorós et al. (2004) reviewed the taxonomic history of Colostethus from Venezuelan Guayana. Here, I provide the description of an additional new species from Aprada tepui, situated west of Chimantá massif and Apacara river. This species was collected by Charles Brewer-Carías and colleagues, during ongoing exploration of Venezuelan Guayana. The only known amphibian from the Aprada tepui is Stefania satelles, from 2500 m (Señaris et al. -
Apistogramma Psammophila – a New Geophagine Dwarf Cichlid (Teleostei: Cichlidae) from the Rio Atabapo Drainage in Colombia and Venezuela
69 (1): 103 –110 © Senckenberg Gesellschaft für Naturforschung, 2019. 27.2.2019 Apistogramma psammophila – a new geophagine dwarf cichlid (Teleostei: Cichlidae) from the Rio Atabapo drainage in Colombia and Venezuela Wolfgang Staeck 1 & Ingo Schindler 2 1 [email protected] — 2 [email protected] Submitted June 29, 2018. Accepted January 10, 2019. Published online at www.senckenberg.de/vertebrate-zoology on February 15, 2019. Published in print on February 27, 2019. Editor in charge: Uwe Fritz Abstract Apistogramma psammophila sp. n. is described from the lower Rio Atabapo drainage in Colombia (Departamento Guainía) and Venezuela (Estado Amazonas). It can be distinguished from all congeners by the following combination of characters: Two dark horizontal stripes on ERG\VLGHWZRSHFWRUDOVSRWVVXERUELWDOVWULSHEHFRPLQJPXFKZLGHUYHQWUDOO\DQGQRFDXGDOVSRW,QDGXOWPDOHVVRIWGRUVDODQGDQDO¿QV HDFKZLWKORQJ¿ODPHQWRXVSURORQJDWLRQDOPRVWUHDFKLQJSRVWHULRUPDUJLQRIFDXGDO¿QDQGSHOYLF¿QVZLWK¿ODPHQWRXVH[WHQVLRQQHDUO\ UHDFKLQJPLGGOHRIDQDO¿QEDVH It is most similar to Apistogramma diplotaenia Kullander, 1987, but differs from this species by an irregular pattern of 6 – 8 short verti- cal dark bar-like markings below the lower lateral stripe, and adult males with reddish area on cheek and chest between eye and pectoral D[LOODDQGGLVWLQFWO\ODQFHRODWHFDXGDO¿Q. Resumen Apistogramma psammophila sp. n. se describe a partir de la cuenca del río Atabapo bajo en Colombia (Departamento Guainía) y Venezuela (Estado Amazonas). La nueva especie se distingue de todas las demás -
(Information) Gap: the Importance of Exploration and Discovery For
Diversity and Distributions, (Diversity Distrib.) (2013) 1–7 BIODIVERSITY Mind the (information) gap: the VIEWPOINT importance of exploration and discovery for assessing conservation priorities for freshwater fish Karen M. Alofs1, Elford A. Liverpool2, Donald C. Taphorn3, Calvin R. Bernard4 and Hernan Lopez-Fern andez1,3,* 1Department of Ecology and Evolutionary Abstract Biology, University of Toronto, 25 Willcocks Biodiversity conservation often is aimed at areas of high species richness and St., Toronto, ON, Canada M5S 3B2, 2Guyana National Museum, Ministry of endemism. Our understanding of freshwater fish diversity in the Neotropics is Culture, Youth and Sport, Company Path, biased by lack of exploration within mountainous regions that historically have Georgetown, Guyana, 3Department of been difficult to access. These regions are particularly likely to contain high Natural History, Royal Ontario Museum, species endemism. The upper Mazaruni River drainage is hydrogeographically 100 Queen’s Park, Toronto, ON, Canada and climatically distinct from the rest of the Essequibo Basin. Recent ichthyo- M5S 2C6, 4Centre for the Study of Biological logical expeditions to the upper Mazaruni discovered up to 32 species previ- A Journal of Conservation Biogeography Diversity, University of Guyana, Georgetown, ously unknown to science and a fish assemblage with perhaps the highest level Guyana of endemism in the Neotropics. This unique ichthyofauna is threatened by gold mining that has severely degraded aquatic habitats and therefore requires *Correspondence: Hernan Lopez-Fern andez, immediate protection. Royal Ontario Museum, 100 Queen’s Park, Keywords Toronto, ON, Canada M5S 2C6. E-mails: [email protected], Endemism, gold mining, Guiana Shield, Guyana, Neotropics, taxonomy, upper [email protected] Mazaruni River. -
Siluriformes, Trichomycteridae) in the Orinoco River Basin
14 1 101 NOTES ON GEOGRAPHIC DISTRIBUTION Check List 14 (1): 101–106 https://doi.org/10.15560/14.1.101 First record of the miniature catfishMalacoglanis gelatinosus Myers & Weitzman, 1966 (Siluriformes, Trichomycteridae) in the Orinoco river basin Diana C. Montoya-Ospina,1 Juan G. Albornoz-Garzón,1 Jorge E. García-Melo,1, 2 Francisco A. Villa-Navarro,1 Carlos DoNascimiento3 1 Universidad del Tolima, Departamento de Biología, Grupo de Investigación en Zoología, Ibagué, Tolima, Colombia. 2 Pontificia Universidad Javeriana, Departamento de Biología, Facultad de Ciencias, Laboratorio de Ictiología, Unidad de Ecología y Sistemática, Bogotá, Colombia. 3 Colecciones Biológicas, Instituto de Investigación de Recursos Biológicos Alexander von Humboldt, Villa de Leyva, Boyacá, Colombia. Corresponding author: Diana C. Montoya-Ospina, [email protected] Abstract Malacoglanis gelatinosus, a species of miniature catfish of the family Trichomycteridae, is only known from 4 speci- mens from the Amazon basin. Recently, we collected 3 specimens from the upper basin of the Meta River, a tributary of the Orinoco. This is the first record of M. gelatinosus from the Orinoco river basin, which significantly expands the known geographic distribution of this species, making it one of the most broadly distributed species within the subfamily Sarcoglanidinae. High-resolution photographs of specimens, remarks on character variation, and an updated distribution in Colombia are provided. Key words Meta River; Neotropical region; Sarcoglanidinae; South America. Academic editor: Gabriela Echevarría | Received 1 November 2017 | Accepted 28 November 2017 | Published 12 January 2018 Citation: Montoya-Ospina DC, Albornoz-Garzón JG, García-Melo JE, Villa-Navarro FA, DoNascimiento C (2018) First record of the miniature catfish Malacoglanis gelatinosus Myers & Weitzman, 1966 (Siluriformes, Trichomycteridae) in the Orinoco river basin, Venezuela. -
How to Bring About Forest-Smart Mining: Strategic Entry Points for Institutional Donors
How to bring about forest-smart mining: strategic entry points for institutional donors November 2020 How to bring about forest-smart mining: strategic entry points for institutional donors November 2020 About this report: The World Bank’s PROFOR Trust Fund developed the concept of Forest-Smart Mining in 2017 to raise awareness of different economic sectors’ impacts upon forest health and forest values, such as biodiversity, ecosystem services, human development, supporting and regulating services and cultural values. From 2017 to 2019, Levin Sources, Fauna and Flora International, Swedish Geological AB, and Fairfields Consulting were commissioned by the World Bank/PROFOR Trust fund to investigate good and bad practices of all scales of mining in forest landscapes, and the contextual conditions that support ‘forest-smart’ mining. Three reports and an Executive Summary were published in May 2019, further to a series of events and launches in New York, Geneva, and London which have led to related publications. This report was commissioned by a philanthropic foundation to provide an analysis of the key initiatives and stakeholders working to address the negative impacts of mining on forests. The purpose of the report is to provide a menu of recommendations to inform the development of a new program to bring about forest-smart mining. In the interest of raising awareness and stimulating appetite and action by other institutional donors to step into this space, the client has permitted Levin Sources and Fauna & Flora International to further develop and publish the report. We would like to thank the client for the opportunity to do so.