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Gibbs Thesis Final Revised Final
Species Declines: Examining patterns of species distribution, abundance, variability and conservation status in relation to anthropogenic activities Mary Katherine Elizabeth Gibbs Thesis submitted to the Faculty of Graduate and Postdoctoral Studies in partial fulfillment of the requirements for the PhD degree in the Ottawa-Carleton Institute of Biology Thèse soumise à la Faculté des étude supérieures et postdoctorales Université d’Ottawa en vue de l’obtention du doctorat de L’institut de biologie d’Ottawa-Carleton Department of Biology Faculty of Science University of Ottawa © Mary Katherine Elizabeth Gibbs, Ottawa, Canada, 2012 Acknowledgements First and foremost, I would like to thank my supervisor, Dr. David Currie. Most importantly, you gave me the freedom to work on questions that I’m passionate about. You never stopped challenging me and always asked that I push a little bit farther. I really think your commitment to scientific rigor goes above and beyond the average. And thank you for the many, many cups of tea over the years. My committee members, Dr. Scott Findlay and Dr. Mark Forbes, your feedback made this a better thesis. Scott, thank you for being scary enough to motivate me to always bring my A-game, and for providing endless new words to look up in the dictionary. By the end of this, I may actually know what ‘epistemological’ means. I would also like to thank Dr. Jeremy Kerr for his insight and not being afraid to be a scientist and an advocate. I need to thank all the lab mates that have come and gone and added so much to the last six years. -
Cairns Regional Council Water and Waste Report for Mulgrave River Aquifer Feasibility Study Flora and Fauna Report
Cairns Regional Council Water and Waste Report for Mulgrave River Aquifer Feasibility Study Flora and Fauna Report November 2009 Contents 1. Introduction 1 1.1 Background 1 1.2 Scope 1 1.3 Project Study Area 2 2. Methodology 4 2.1 Background and Approach 4 2.2 Demarcation of the Aquifer Study Area 4 2.3 Field Investigation of Proposed Bore Hole Sites 5 2.4 Overview of Ecological Values Descriptions 5 2.5 PER Guidelines 5 2.6 Desktop and Database Assessments 7 3. Database Searches and Survey Results 11 3.1 Information Sources 11 3.2 Species of National Environmental Significance 11 3.3 Queensland Species of Conservation Significance 18 3.4 Pest Species 22 3.5 Vegetation Communities 24 3.6 Regional Ecosystem Types and Integrity 28 3.7 Aquatic Values 31 3.8 World Heritage Values 53 3.9 Results of Field Investigation of Proposed Bore Hole Sites 54 4. References 61 Table Index Table 1: Summary of NES Matters Protected under Part 3 of the EPBC Act 5 Table 2 Summary of World Heritage Values within/adjacent Aquifer Area of Influence 6 Table 3: Species of NES Identified as Occurring within the Study Area 11 Table 4: Summary of Regional Ecosystems and Groundwater Dependencies 26 42/15610/100421 Mulgrave River Aquifer Feasibility Study Flora and Fauna Report Table 5: Freshwater Fish Species in the Mulgrave River 36 Table 6: Estuarine Fish Species in the Mulgrave River 50 Table 7: Description of potential borehole field in Aloomba as of 20th August, 2009. 55 Figure Index Figure 1: Regional Ecosystem Conservation Status and Protected Species Observation 21 Figure 2: Vegetation Communities and Groundwater Dependencies 30 Figure 3: Locations of Study Sites 54 Appendices A Database Searches 42/15610/100421 Mulgrave River Aquifer Feasibility Study Flora and Fauna Report 1. -
A New Subspecies of Jackyhosersaur Hoser, 2013 from North-West Australia
Australasian Journal of Herpetology 5 Australasian Journal of Herpetology 49:5-6. Published 6 August 2020. ISSN 1836-5698 (Print) ISSN 1836-5779 (Online) A new subspecies of Jackyhosersaur Hoser, 2013 from north-west Australia. LSIDURN:LSID:ZOOBANK.ORG:PUB:2877185D-E93C-4040-973C-89657DC512B1 RAYMOND T. HOSER LSID urn:lsid:zoobank.org:author:F9D74EB5-CFB5-49A0-8C7C-9F993B8504AE 488 Park Road, Park Orchards, Victoria, 3134, Australia. Phone: +61 3 9812 3322 Fax: 9812 3355 E-mail: snakeman (at) snakeman.com.au Received 10 February 2017, Accepted 17 January 2020, Published 6 August 2020. ABSTRACT As part of an ongoing audit of Australian reptiles, specimens of the endemic Western Australian dragon species, Jackyhosersaur superba (Storr, 1974), known to most herpetologists as “Diporiphora superba Storr, 1974” were inspected from all parts of the known range. A population from the Manning Creek Gorge area of the Kimberley in Western Australia were found to be morphologically divergent and so are formally described herein as a new subspecies. Keywords: Lizards; taxonomy; nomenclature; Agamidae; Western Australia; Diporiphora; Jackyhosersaur; superba; newsubspecies; jackyhoserae. INTRODUCTION Jackyhosersaur superba (Storr, 1974) as currently recognized, As stated in the abstract, as part of an ongoing audit of even though all occur within close geographical proximity, being Australian reptiles, specimens of the endemic Western restricted to the high rainfall parts of the West Kimberley Region. Australian dragon species, Jackyhosersaur superba (Storr, Significant is that the species appears to be reasonably 1974) were inspected from all parts of the known range. A common and different populations are in close proximity to one population from the Manning Creek Gorge area of the Kimberley another without obvious biogeographical barriers stopping gene in Western Australia were found to be morphologically divergent flow between them. -
Two New Endangered Species of Anomaloglossus (Anura: Aromobatidae) from Roraima State, Northern Brazil
Zootaxa 3926 (2): 191–210 ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ Article ZOOTAXA Copyright © 2015 Magnolia Press ISSN 1175-5334 (online edition) http://dx.doi.org/10.11646/zootaxa.3926.2.2 http://zoobank.org/urn:lsid:zoobank.org:pub:BCA3901A-DF07-4FAF-8386-C24649557313 Two new endangered species of Anomaloglossus (Anura: Aromobatidae) from Roraima State, northern Brazil ANTOINE FOUQUET1,2,8, SERGIO MARQUES SOUZA2, PEDRO M. SALES NUNES2,3, PHILIPPE J. R. KOK4,5, FELIPE FRANCO CURCIO2,6, CELSO MORATO DE CARVALHO7, TARAN GRANT2 & MIGUEL TREFAUT RODRIGUES2 1CNRS Guyane USR3456, Immeuble Le Relais, 2 Avenue Gustave Charlery, 97300, Cayenne, French Guiana 2Universidade de São Paulo, Instituto de Biociências, Departamento de Zoologia, Caixa Postal 11.461,CEP 05508-090, São Paulo, SP, Brazil 3Universidade Federal de Pernambuco, Centro de Ciências Biológicas, Departamento de Zoologia, Av. Professor Moraes Rego, s/n. Cidade Universitária CEP 50670-901, Recife, PE, Brazil 4Biology Department, Amphibian Evolution Lab, Vrije Universiteit Brussel, 2 Pleinlaan, B- 1050 Brussels, Belgium 5Department of Recent Vertebrates, Royal Belgian Institute of Natural Sciences, 29 rue Vautier, B- 1000 Brussels, Belgium 6Universidade Federal de Mato Grosso, Instituto de Biociências, Departamento de Biologia e Zoologia, CEP 78060-900, Cuiaba MT, Brazil 7INPA Núcleo de Pesquisas de Roraima (INPA/NPRR), Rua Coronel Pinto 315 – Centro, 69301-970, Boa Vista, RR, Brazil 8Corresponding author. E-mail: [email protected] Abstract We describe two new species of Anomaloglossus from Roraima State, Brazil, that are likely endemic to single mountains currently isolated among lowland forest and savanna ecosystems. The first species, Anomaloglossus tepequem sp. -
An Annotated Type Catalogue of the Dragon Lizards (Reptilia: Squamata: Agamidae) in the Collection of the Western Australian Museum Ryan J
RECORDS OF THE WESTERN AUSTRALIAN MUSEUM 34 115–132 (2019) DOI: 10.18195/issn.0312-3162.34(2).2019.115-132 An annotated type catalogue of the dragon lizards (Reptilia: Squamata: Agamidae) in the collection of the Western Australian Museum Ryan J. Ellis Department of Terrestrial Zoology, Western Australian Museum, Locked Bag 49, Welshpool DC, Western Australia 6986, Australia. Biologic Environmental Survey, 24–26 Wickham St, East Perth, Western Australia 6004, Australia. Email: [email protected] ABSTRACT – The Western Australian Museum holds a vast collection of specimens representing a large portion of the 106 currently recognised taxa of dragon lizards (family Agamidae) known to occur across Australia. While the museum’s collection is dominated by Western Australian species, it also contains a selection of specimens from localities in other Australian states and a small selection from outside of Australia. Currently the museum’s collection contains 18,914 agamid specimens representing 89 of the 106 currently recognised taxa from across Australia and 27 from outside of Australia. This includes 824 type specimens representing 45 currently recognised taxa and three synonymised taxa, comprising 43 holotypes, three syntypes and 779 paratypes. Of the paratypes, a total of 43 specimens have been gifted to other collections, disposed or could not be located and are considered lost. An annotated catalogue is provided for all agamid type material currently and previously maintained in the herpetological collection of the Western Australian Museum. KEYWORDS: type specimens, holotype, syntype, paratype, dragon lizard, nomenclature. INTRODUCTION Australia was named by John Edward Gray in 1825, The Agamidae, commonly referred to as dragon Clamydosaurus kingii Gray, 1825 [now Chlamydosaurus lizards, comprises over 480 taxa worldwide, occurring kingii (Gray, 1825)]. -
Real-Time DNA Barcoding in a Remote Rainforest Using Nanopore Sequencing
bioRxiv preprint doi: https://doi.org/10.1101/189159; this version posted September 15, 2017. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Real-time DNA barcoding in a remote rainforest using nanopore sequencing 2 3 Aaron Pomerantz1,*, Nicolás Peñafiel2, Alejandro Arteaga3, Lucas Bustamante3, Frank Pichardo3, 4 Luis A. Coloma4, César L. Barrio-Amorós5, David Salazar-Valenzuela2, Stefan Prost 1,6,* 5 6 1 Department of Integrative Biology, University of California, Berkeley, CA, USA 7 2 Centro de Investigación de la Biodiversidad y Cambio Climático (BioCamb) e Ingeniería en 8 Biodiversidad y Recursos Genéticos, Facultad de Ciencias de Medio Ambiente, Universidad 9 Tecnológica Indoamérica, Machala y Sabanilla, Quito, Ecuador 10 3 Tropical Herping, Quito, Ecuador 11 4 Centro Jambatu de Investigación y Conservación de Anfibios, Fundación Otonga, Quito, 12 Ecuador 13 5 Doc Frog Expeditions, Uvita, Costa Rica 14 6 Program for Conservation Genomics, Department of Biology, Stanford University, Stanford, CA, 15 USA 16 17 * Corresponding authors: [email protected] (A. Pomerantz) and 18 [email protected] (S. Prost) 19 20 Abstract 21 Advancements in portable scientific instruments provide promising avenues to expedite 22 field work in order to understand the diverse array of organisms that inhabit our planet. 23 Here we tested the feasibility for in situ molecular analyses of endemic fauna using a 24 portable laboratory fitting within a single backpack, in one of the world’s most imperiled 25 biodiversity hotspots: the Ecuadorian Chocó rainforest. -
KENNETH A. NAGY PUBLICATIONS up to JUNE 2016
KENNETH A. NAGY PUBLICATIONS Up to JUNE 2016 For Open Access pdf, click link. For copyrighted reprint pdfs, please email your request to Ken Nagy at [email protected]. I will be happy to share a copy of the article with individual colleagues, when permissible under copyright law. 2016 Nagy, K.A., G. Kuchling, L.S. Hillard, and B.T. Henen. (2016) Weather and sex ratios of head-started Agassiz’s desert tortoise Gopherus agassizii juveniles hatched in natural habitat enclosures. Endangered Species Research 30:145- 155. (Research article) (Link to pdf) Ellsworth, E., M.R. Boudreau, K. Nagy, J.L. Rachlow, and D.L. Murray. (2016). Differential sex-related winter energetics in free-ranging snowshoe hAres (Lepus americanus). Canadian Journal of Zoology 94:115-121. (Research article) (link to pdf) 2015 Nagy, K.A., S.Hillard, S. Dickson, and D.J. Morafka. (2015). Effects of artificial rain on survivorship, body condition, and growth of head-started desert tortoises (Gopherus agassizii) released to the open desert. Herpetological Conservation and Biology 10:535-549. (Research article) (Link to pdf) Nagy, K.A., L.S. Hillard, M.W. Tuma, and D.J. Morafka. (2015). Head-started desert tortoises (Gopherus agassizii): Movements, survivorship and mortality causes following their release. Herpetological Conservation and Biology 10:203-215. (Research article) (link to pdf) 2014 Gienger, C.M., C.R. Tracy, and K.A. Nagy. (2014). Life in the slow lane: GilA Monsters have low rates of energy use and water flux. Copeia 2014:279-287. (Research article) (email Nagy for pdf) 2012 Nagy, K.A., and G.G. -
Aark: Keeping Threatened Amphibian Species Afloat
APRIL 2017 AMPHIBIAN SURVIVAL ALLIANCE NEWTSLETTER Got a story you want to share? Drop Candace an email today! [email protected] Stories from our partners around the world AArk: Keeping threatened amphibian species afloat which will hopefully mean less work for the expert as- sessors, and will increase the number of assessments that can be completed. We have enlisted 10 very eager and capable volunteers, who are currently drafting as- sessments, based on the data in previously-published species accounts. Once the draft assessments have been made, using all available data, we will then ask the appropriate species experts to review the drafts, update any additional data, and then approve them. This process of pre-filling assessments has been used for amphibian assessments in the IUCN Red List, and has proven to be very beneficial. © Gilbert Alvarado Barboza © Alvarado Gilbert Our Training Officer is planning for a couple of capacity- During the past two months Amphibian Ark has been building courses in the coming months - the Biology, involved in a number of projects. Management and Conservation of North American Salamanders course will be held at Zoo Atlanta, Geor- We are continuing to facilitate national Conservation gia, USA, September 18th–22nd, and the Guatemalan Needs Assessments, and at the moment we are concen- Amphibian Biology, Management and Conservation trating on species from the Western Ghats in India, and Training Course will be held at the Universidad del Valle North American salamanders. With several groups keen de Guatemala in November 2017. Information about to establish ex situ conservation programs for species both courses can be found on the AArk web site, www. -
NHBSS 061 1G Hikida Fieldg
Book Review N$7+IST. BULL. S,$0 SOC. 61(1): 41–51, 2015 A Field Guide to the Reptiles of Thailand by Tanya Chan-ard, John W. K. Parr and Jarujin Nabhitabhata. Oxford University Press, New York, 2015. 344 pp. paper. ISBN: 9780199736492. 7KDLUHSWLOHVZHUHÀUVWH[WHQVLYHO\VWXGLHGE\WZRJUHDWKHUSHWRORJLVWV0DOFROP$UWKXU 6PLWKDQG(GZDUG+DUULVRQ7D\ORU7KHLUFRQWULEXWLRQVZHUHSXEOLVKHGDV6MITH (1931, 1935, 1943) and TAYLOR 5HFHQWO\RWKHUERRNVDERXWUHSWLOHVDQGDPSKLELDQV LQ7KDLODQGZHUHSXEOLVKHG HJ&HAN-ARD ET AL., 1999: COX ET AL DVZHOODVPDQ\ SDSHUV+RZHYHUWKHVHERRNVZHUHWD[RQRPLFVWXGLHVDQGQRWJXLGHVIRURUGLQDU\SHRSOH7ZR DGGLWLRQDOÀHOGJXLGHERRNVRQUHSWLOHVRUDPSKLELDQVDQGUHSWLOHVKDYHDOVREHHQSXEOLVKHG 0ANTHEY & GROSSMANN, 1997; DAS EXWWKHVHERRNVFRYHURQO\DSDUWRIWKHIDXQD The book under review is very well prepared and will help us know Thai reptiles better. 2QHRIWKHDXWKRUV-DUXMLQ1DEKLWDEKDWDZDVP\ROGIULHQGIRUPHUO\WKH'LUHFWRURI1DWXUDO +LVWRU\0XVHXPWKH1DWLRQDO6FLHQFH0XVHXP7KDLODQG+HZDVDQH[FHOOHQWQDWXUDOLVW DQGKDGH[WHQVLYHNQRZOHGJHDERXW7KDLDQLPDOVHVSHFLDOO\DPSKLELDQVDQGUHSWLOHV,Q ZHYLVLWHG.KDR6RL'DR:LOGOLIH6DQFWXDU\WRVXUYH\KHUSHWRIDXQD+HDGYLVHGXV WRGLJTXLFNO\DURXQGWKHUH:HFROOHFWHGIRXUVSHFLPHQVRIDibamusZKLFKZHGHVFULEHG DVDQHZVSHFLHVDibamus somsaki +ONDA ET AL 1RZ,DPYHU\JODGWRNQRZWKDW WKLVERRNZDVSXEOLVKHGE\KLPDQGKLVFROOHDJXHV8QIRUWXQDWHO\KHSDVVHGDZD\LQ +LVXQWLPHO\GHDWKPD\KDYHGHOD\HGWKHSXEOLFDWLRQRIWKLVERRN7KHERRNLQFOXGHVQHDUO\ DOOQDWLYHUHSWLOHV PRUHWKDQVSHFLHV LQ7KDLODQGDQGPRVWSLFWXUHVZHUHGUDZQZLWK H[FHOOHQWGHWDLO,WLVDYHU\JRRGÀHOGJXLGHIRULGHQWLÀFDWLRQRI7KDLUHSWLOHVIRUVWXGHQWV -
Table 7: Species Changing IUCN Red List Status (2018-2019)
IUCN Red List version 2019-3: Table 7 Last Updated: 10 December 2019 Table 7: Species changing IUCN Red List Status (2018-2019) Published listings of a species' status may change for a variety of reasons (genuine improvement or deterioration in status; new information being available that was not known at the time of the previous assessment; taxonomic changes; corrections to mistakes made in previous assessments, etc. To help Red List users interpret the changes between the Red List updates, a summary of species that have changed category between 2018 (IUCN Red List version 2018-2) and 2019 (IUCN Red List version 2019-3) and the reasons for these changes is provided in the table below. IUCN Red List Categories: EX - Extinct, EW - Extinct in the Wild, CR - Critically Endangered [CR(PE) - Critically Endangered (Possibly Extinct), CR(PEW) - Critically Endangered (Possibly Extinct in the Wild)], EN - Endangered, VU - Vulnerable, LR/cd - Lower Risk/conservation dependent, NT - Near Threatened (includes LR/nt - Lower Risk/near threatened), DD - Data Deficient, LC - Least Concern (includes LR/lc - Lower Risk, least concern). Reasons for change: G - Genuine status change (genuine improvement or deterioration in the species' status); N - Non-genuine status change (i.e., status changes due to new information, improved knowledge of the criteria, incorrect data used previously, taxonomic revision, etc.); E - Previous listing was an Error. IUCN Red List IUCN Red Reason for Red List Scientific name Common name (2018) List (2019) change version Category -
Surveys of the Sea Snakes and Sea Turtles on Reefs of the Sahul Shelf
Surveys of the Sea Snakes and Sea Turtles on Reefs of the Sahul Shelf Monitoring Program for the Montara Well Release Timor Sea MONITORING STUDY S6 SEA SNAKES / TURTLES Dr Michael L Guinea School of Environment Faculty of Engineering, Health, Science and the Environment Charles Darwin University Darwin 0909 Northern Territory Draft Final Report 2012-2013 Acknowledgements: Two survey by teams of ten and eleven people respectively housed on one boat and operating out of three tenders for most of the daylight hours for 20 days and covering over 2500 km of ocean can only succeed with enthusiastic members, competent and obliging crew and good organisation. I am indebted to my team members whose names appear in the personnel list. I thank Drs Arne Rasmussen and Kate Sanders who gave their time and shared their knowledge and experiences. I thank the staff at Pearl Sea Coastal Cruises for their organisation and forethought. In particular I thank Alice Ralston who kept us on track and informed. The captains Ben and Jeff and Engineer Josh and the coxswains Riley, Cam, Blade and Brad; the Chef Stephen and hostesses Sunny and Ellen made the trips productive, safe and enjoyable. I thank the Department of Environment and Conservation WA for scientific permits to enter the reserves of Sandy Islet, Scott Reef and Browse Island. I am grateful to the staff at DSEWPaC, for facilitating and providing the permits to survey sea snakes and marine turtles at Ashmore Reef and Cartier Island. Activities were conducted under Animal Ethics Approval A11028 from Charles Darwin University. Olive Seasnake, Aipysurus laevis, on Seringapatam Reef. -
Anura: Dendrobatidae: Anomaloglossus) from the Orinoquian Rainforest, Southern Venezuela
TERMS OF USE This pdf is provided by Magnolia Press for private/research use. Commercial sale or deposition in a public library or website is prohibited. Zootaxa 2413: 37–50 (2010) ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ Article ZOOTAXA Copyright © 2010 · Magnolia Press ISSN 1175-5334 (online edition) A new dendrobatid frog (Anura: Dendrobatidae: Anomaloglossus) from the Orinoquian rainforest, southern Venezuela CÉSAR L. BARRIO-AMORÓS1,4, JUAN CARLOS SANTOS2 & OLGA JOVANOVIC3 1,4 Fundación AndígenA, Apartado postal 210, 5101-A Mérida, Venezuela 2University of Texas at Austin, Integrative Biology, 1 University Station C0930 Austin TX 78705, USA 3Division of Evolutionary Biology, Technical University of Braunschweig, Spielmannstr 8, 38106 Braunschweig, Germany 4Corresponding author. E-mail: [email protected]; [email protected] Abstract A new species of Anomaloglossus is described from the Venezuelan Guayana; it is the 21st described species of Anomaloglossus from the Guiana Shield, and the 15th from Venezuela. This species inhabits rainforest on granitic substrate on the northwestern edge of the Guiana Shield (Estado Amazonas, Venezuela). The new species is distinguished from congeners by sexual dimorphism, its unique male color pattern (including two bright orange parotoid marks and two orange paracloacal spots on dark brown background), call characteristics and other morphological features. Though to the new species is known only from the northwestern edge of the Guiana Shield, its distribution may be more extensive, as there are no significant biogeographic barriers isolating the type locality from the granitic lowlands of Venezuela. Key words: Amphibia, Dendrobatidae, Anomaloglossus, Venezuela, Guiana Shield Resumen Se describe una nueva especie de Anomaloglossus de la Guayana venezolana, que es la vigesimoprimera descrita del Escudo Guayanés, y la decimoquinta para Venezuela.