Towards a Natural Classification of Dothideomycetes 5
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Castanedospora, a New Genus to Accommodate Sporidesmium
Cryptogamie, Mycologie, 2018, 39 (1): 109-127 © 2018 Adac. Tous droits réservés South Florida microfungi: Castanedospora,anew genus to accommodate Sporidesmium pachyanthicola (Capnodiales, Ascomycota) Gregorio DELGADO a,b*, Andrew N. MILLER c & Meike PIEPENBRING b aEMLab P&K Houston, 10900 BrittmoorePark Drive Suite G, Houston, TX 77041, USA bDepartment of Mycology,Institute of Ecology,Evolution and Diversity, Goethe UniversitätFrankfurt, Max-von-Laue-Str.13, 60438 Frankfurt am Main, Germany cIllinois Natural History Survey,University of Illinois, 1816 South Oak Street, Champaign, IL 61820, USA Abstract – The taxonomic status and phylogenetic placement of Sporidesmium pachyanthicola in Capnodiales(Dothideomycetes) are revisited based on aspecimen collected on the petiole of adead leaf of Sabal palmetto in south Florida, U.S.A. New evidence inferred from phylogenetic analyses of nuclear ribosomal DNA sequence data together with abroad taxon sampling at family level suggest that the fungus is amember of Extremaceaeand therefore its previous placement within the broadly defined Teratosphaeriaceae was not supported. Anew genus Castanedospora is introduced to accommodate this species on the basis of its distinct morphology and phylogenetic position distant from Sporidesmiaceae sensu stricto in Sordariomycetes. The holotype material from Cuba was found to be exhausted and the Florida specimen, which agrees well with the original description, is selected as epitype. The fungus produced considerably long cylindrical to narrowly obclavate conidia -
Patellariaceae Revisited
Mycosphere 6 (3): 290–326(2015) ISSN 2077 7019 www.mycosphere.org Article Mycosphere Copyright © 2015 Online Edition Doi 10.5943/mycosphere/6/3/7 Patellariaceae revisited Yacharoen S1,2, Tian Q1,2, Chomnunti P1,2, Boonmee S1, Chukeatirote E2, Bhat JD3 and Hyde KD1,2,4,5* 1Institute of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, 57100, Thailand 2School of Science, Mae Fah Luang University, Chiang Rai, 57100, Thailand 3Formerly at Department of Botany, Goa University, Goa 403 206, India 4Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Science, Kunming 650201, Yunnan, China 5World Agroforestry Centre, East and Central Asia, Kunming 650201, Yunnan, China Yacharoen S, Tian Q, Chomnunti P, Boonmee S, Chukeatirote E, Bhat JD, Hyde KD 2015 – Patellariaceae revisited. Mycosphere 6(3), 290–326, Doi 10.5943/mycosphere/6/3/7 Abstract The Dothideomycetes include several genera whose ascomata can be considered as apothecia and thus would be grouped as discomycetes. Most genera are grouped in the family Patellariaceae, but also Agrynnaceae and other families. The Hysteriales include genera having hysterioid ascomata and can be confused with species in Patellariaceae with discoid apothecia if the opening is wide enough. In this study, genera of the family Patellariaceae were re-examined and characterized based on morphological examination. As a result of this study the genera Baggea, Endotryblidium, Holmiella, Hysteropatella, Lecanidiella, Lirellodisca, Murangium, Patellaria, Poetschia, Rhizodiscina, Schrakia, Stratisporella and Tryblidaria are retained in the family Patellariaceae. The genera Banhegyia, Pseudoparodia and Rhytidhysteron are excluded because of differing morphology and/or molecular data. -
Phylogeny of Rock-Inhabiting Fungi Related to Dothideomycetes Ruibal, C
UvA-DARE (Digital Academic Repository) Phylogeny of rock-inhabiting fungi related to Dothideomycetes Ruibal, C.; Gueidan, C.; Selbmann, L.; Gorbushina, A.A.; Crous, P.W.; Groenewald, J.Z.; Muggia, L.; Grube, M.; Isola, D.; Schoch, C.L.; Staley, J.T.; Lutzoni, F.; de Hoog, G.S. Published in: Studies in Mycology DOI: 10.3114/sim.2009.64.06 Link to publication Citation for published version (APA): Ruibal, C., Gueidan, C., Selbmann, L., Gorbushina, A. A., Crous, P. W., Groenewald, J. Z., ... de Hoog, G. S. (2009). Phylogeny of rock-inhabiting fungi related to Dothideomycetes. Studies in Mycology, 64(1), 123-133. DOI: 10.3114/sim.2009.64.06 General rights It is not permitted to download or to forward/distribute the text or part of it without the consent of the author(s) and/or copyright holder(s), other than for strictly personal, individual use, unless the work is under an open content license (like Creative Commons). Disclaimer/Complaints regulations If you believe that digital publication of certain material infringes any of your rights or (privacy) interests, please let the Library know, stating your reasons. In case of a legitimate complaint, the Library will make the material inaccessible and/or remove it from the website. Please Ask the Library: http://uba.uva.nl/en/contact, or a letter to: Library of the University of Amsterdam, Secretariat, Singel 425, 1012 WP Amsterdam, The Netherlands. You will be contacted as soon as possible. UvA-DARE is a service provided by the library of the University of Amsterdam (http://dare.uva.nl) Download date: 16 Jun 2017 available online at www.studiesinmycology.org StudieS in Mycology 64: 123–133. -
Fungal Planet Description Sheets: 716–784 By: P.W
Fungal Planet description sheets: 716–784 By: P.W. Crous, M.J. Wingfield, T.I. Burgess, G.E.St.J. Hardy, J. Gené, J. Guarro, I.G. Baseia, D. García, L.F.P. Gusmão, C.M. Souza-Motta, R. Thangavel, S. Adamčík, A. Barili, C.W. Barnes, J.D.P. Bezerra, J.J. Bordallo, J.F. Cano-Lira, R.J.V. de Oliveira, E. Ercole, V. Hubka, I. Iturrieta-González, A. Kubátová, M.P. Martín, P.-A. Moreau, A. Morte, M.E. Ordoñez, A. Rodríguez, A.M. Stchigel, A. Vizzini, J. Abdollahzadeh, V.P. Abreu, K. Adamčíková, G.M.R. Albuquerque, A.V. Alexandrova, E. Álvarez Duarte, C. Armstrong-Cho, S. Banniza, R.N. Barbosa, J.-M. Bellanger, J.L. Bezerra, T.S. Cabral, M. Caboň, E. Caicedo, T. Cantillo, A.J. Carnegie, L.T. Carmo, R.F. Castañeda-Ruiz, C.R. Clement, A. Čmoková, L.B. Conceição, R.H.S.F. Cruz, U. Damm, B.D.B. da Silva, G.A. da Silva, R.M.F. da Silva, A.L.C.M. de A. Santiago, L.F. de Oliveira, C.A.F. de Souza, F. Déniel, B. Dima, G. Dong, J. Edwards, C.R. Félix, J. Fournier, T.B. Gibertoni, K. Hosaka, T. Iturriaga, M. Jadan, J.-L. Jany, Ž. Jurjević, M. Kolařík, I. Kušan, M.F. Landell, T.R. Leite Cordeiro, D.X. Lima, M. Loizides, S. Luo, A.R. Machado, H. Madrid, O.M.C. Magalhães, P. Marinho, N. Matočec, A. Mešić, A.N. Miller, O.V. Morozova, R.P. Neves, K. Nonaka, A. Nováková, N.H. -
Melaspilea Galligena Sp. Nov. and Some Other Lichenicolous Fungi from Russia
Folia Cryptog. Estonica, Fasc. 50: 89–99 (2013) http://dx.doi.org/10.12697/fce.2013.50.12 Melaspilea galligena sp. nov. and some other lichenicolous fungi from Russia Mikhail P. Zhurbenko1 & Ilya S. Zhdanov2 1Laboratory of the Systematics and Geography of Fungi, Komarov Botanical Institute, Russian Academy of Sciences, Professora Popova str., 2, St. Petersburg, 197376, Russia. E-mail: [email protected] 2Laboratory for Synecology, A. N. Severtsov Institute of Ecology and Evolution, Russian Academy of Sciences, Leninskii Prospect, 33, Moscow, 119071, Russia. E-mail: [email protected] Abstract: Thirty species of lichenicolous fungi are reported, many being new to various regions of Russia. Melaspilea galligena sp. nov. growing on Pertusaria cf. cribellata is described from Russian Far East. A possibly new lichenicolous Toninia species (on Parmelina tiliacea) and a species of Arthonia (on Cladonia) with 1–2-septate ascospores resembling poorly known A. lepidophila are described, illustrated and discussed. Dactylospora suburceolata is reported new to Russia and Asia, growing on a new host species Mycobilimbia carneoalbida. Tremella cetrariicola is new to Siberia and Clypeococcum cetrariae is newly documented on Vulpicida. INTRODUCTION Taxonomic diversity and distribution of licheni- All specimens have been collected by Ilya S. Zh- colous fungi of Russia is still far from being danov and identified by Mikhail P. Zhurbenko. reasonably revealed. This is proved by results Biogeographic novelties are mainly referred to of identification by the first author of miscel- the current administrative subdivision of Rus- laneous specimens of these fungi collected by sia. Examined specimens are deposited in LE- the second author in various regions of Russia Fungi herbarium. -
Mycosphere Notes 225–274: Types and Other Specimens of Some Genera of Ascomycota
Mycosphere 9(4): 647–754 (2018) www.mycosphere.org ISSN 2077 7019 Article Doi 10.5943/mycosphere/9/4/3 Copyright © Guizhou Academy of Agricultural Sciences Mycosphere Notes 225–274: types and other specimens of some genera of Ascomycota Doilom M1,2,3, Hyde KD2,3,6, Phookamsak R1,2,3, Dai DQ4,, Tang LZ4,14, Hongsanan S5, Chomnunti P6, Boonmee S6, Dayarathne MC6, Li WJ6, Thambugala KM6, Perera RH 6, Daranagama DA6,13, Norphanphoun C6, Konta S6, Dong W6,7, Ertz D8,9, Phillips AJL10, McKenzie EHC11, Vinit K6,7, Ariyawansa HA12, Jones EBG7, Mortimer PE2, Xu JC2,3, Promputtha I1 1 Department of Biology, Faculty of Science, Chiang Mai University, Chiang Mai 50200, Thailand 2 Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, 132 Lanhei Road, Kunming 650201, China 3 World Agro Forestry Centre, East and Central Asia, 132 Lanhei Road, Kunming 650201, Yunnan Province, People’s Republic of China 4 Center for Yunnan Plateau Biological Resources Protection and Utilization, College of Biological Resource and Food Engineering, Qujing Normal University, Qujing, Yunnan 655011, China 5 Shenzhen Key Laboratory of Microbial Genetic Engineering, College of Life Sciences and Oceanography, Shenzhen University, Shenzhen 518060, China 6 Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand 7 Department of Entomology and Plant Pathology, Faculty of Agriculture, Chiang Mai University, Chiang Mai 50200, Thailand 8 Department Research (BT), Botanic Garden Meise, Nieuwelaan 38, BE-1860 Meise, Belgium 9 Direction Générale de l'Enseignement non obligatoire et de la Recherche scientifique, Fédération Wallonie-Bruxelles, Rue A. -
Molecular Systematics of the Marine Dothideomycetes
available online at www.studiesinmycology.org StudieS in Mycology 64: 155–173. 2009. doi:10.3114/sim.2009.64.09 Molecular systematics of the marine Dothideomycetes S. Suetrong1, 2, C.L. Schoch3, J.W. Spatafora4, J. Kohlmeyer5, B. Volkmann-Kohlmeyer5, J. Sakayaroj2, S. Phongpaichit1, K. Tanaka6, K. Hirayama6 and E.B.G. Jones2* 1Department of Microbiology, Faculty of Science, Prince of Songkla University, Hat Yai, Songkhla, 90112, Thailand; 2Bioresources Technology Unit, National Center for Genetic Engineering and Biotechnology (BIOTEC), 113 Thailand Science Park, Paholyothin Road, Khlong 1, Khlong Luang, Pathum Thani, 12120, Thailand; 3National Center for Biothechnology Information, National Library of Medicine, National Institutes of Health, 45 Center Drive, MSC 6510, Bethesda, Maryland 20892-6510, U.S.A.; 4Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon, 97331, U.S.A.; 5Institute of Marine Sciences, University of North Carolina at Chapel Hill, Morehead City, North Carolina 28557, U.S.A.; 6Faculty of Agriculture & Life Sciences, Hirosaki University, Bunkyo-cho 3, Hirosaki, Aomori 036-8561, Japan *Correspondence: E.B. Gareth Jones, [email protected] Abstract: Phylogenetic analyses of four nuclear genes, namely the large and small subunits of the nuclear ribosomal RNA, transcription elongation factor 1-alpha and the second largest RNA polymerase II subunit, established that the ecological group of marine bitunicate ascomycetes has representatives in the orders Capnodiales, Hysteriales, Jahnulales, Mytilinidiales, Patellariales and Pleosporales. Most of the fungi sequenced were intertidal mangrove taxa and belong to members of 12 families in the Pleosporales: Aigialaceae, Didymellaceae, Leptosphaeriaceae, Lenthitheciaceae, Lophiostomataceae, Massarinaceae, Montagnulaceae, Morosphaeriaceae, Phaeosphaeriaceae, Pleosporaceae, Testudinaceae and Trematosphaeriaceae. Two new families are described: Aigialaceae and Morosphaeriaceae, and three new genera proposed: Halomassarina, Morosphaeria and Rimora. -
An Evolving Phylogenetically Based Taxonomy of Lichens and Allied Fungi
Opuscula Philolichenum, 11: 4-10. 2012. *pdf available online 3January2012 via (http://sweetgum.nybg.org/philolichenum/) An evolving phylogenetically based taxonomy of lichens and allied fungi 1 BRENDAN P. HODKINSON ABSTRACT. – A taxonomic scheme for lichens and allied fungi that synthesizes scientific knowledge from a variety of sources is presented. The system put forth here is intended both (1) to provide a skeletal outline of the lichens and allied fungi that can be used as a provisional filing and databasing scheme by lichen herbarium/data managers and (2) to announce the online presence of an official taxonomy that will define the scope of the newly formed International Committee for the Nomenclature of Lichens and Allied Fungi (ICNLAF). The online version of the taxonomy presented here will continue to evolve along with our understanding of the organisms. Additionally, the subfamily Fissurinoideae Rivas Plata, Lücking and Lumbsch is elevated to the rank of family as Fissurinaceae. KEYWORDS. – higher-level taxonomy, lichen-forming fungi, lichenized fungi, phylogeny INTRODUCTION Traditionally, lichen herbaria have been arranged alphabetically, a scheme that stands in stark contrast to the phylogenetic scheme used by nearly all vascular plant herbaria. The justification typically given for this practice is that lichen taxonomy is too unstable to establish a reasonable system of classification. However, recent leaps forward in our understanding of the higher-level classification of fungi, driven primarily by the NSF-funded Assembling the Fungal Tree of Life (AFToL) project (Lutzoni et al. 2004), have caused the taxonomy of lichen-forming and allied fungi to increase significantly in stability. This is especially true within the class Lecanoromycetes, the main group of lichen-forming fungi (Miadlikowska et al. -
The Macroevolutionary Dynamics of Symbiotic and Phenotypic Diversification in Lichens
The macroevolutionary dynamics of symbiotic and phenotypic diversification in lichens Matthew P. Nelsena,1, Robert Lückingb, C. Kevin Boycec, H. Thorsten Lumbscha, and Richard H. Reea aDepartment of Science and Education, Negaunee Integrative Research Center, The Field Museum, Chicago, IL 60605; bBotanischer Garten und Botanisches Museum, Freie Universität Berlin, 14195 Berlin, Germany; and cDepartment of Geological Sciences, Stanford University, Stanford, CA 94305 Edited by Joan E. Strassmann, Washington University in St. Louis, St. Louis, MO, and approved July 14, 2020 (received for review February 6, 2020) Symbioses are evolutionarily pervasive and play fundamental roles macroevolutionary consequences of ant–plant interactions (15–19). in structuring ecosystems, yet our understanding of their macroevo- However, insufficient attention has been paid to one of the most lutionary origins, persistence, and consequences is incomplete. We iconic examples of symbiosis (20, 21): Lichens. traced the macroevolutionary history of symbiotic and phenotypic Lichens are stable associations between a mycobiont (fungus) diversification in an iconic symbiosis, lichens. By inferring the most and photobiont (eukaryotic alga or cyanobacterium). The pho- comprehensive time-scaled phylogeny of lichen-forming fungi (LFF) tobiont supplies the heterotrophic fungus with photosynthetically to date (over 3,300 species), we identified shifts among symbiont derived carbohydrates, while the mycobiont provides the pho- classes that broadly coincided with the convergent -
H. Thorsten Lumbsch VP, Science & Education the Field Museum 1400
H. Thorsten Lumbsch VP, Science & Education The Field Museum 1400 S. Lake Shore Drive Chicago, Illinois 60605 USA Tel: 1-312-665-7881 E-mail: [email protected] Research interests Evolution and Systematics of Fungi Biogeography and Diversification Rates of Fungi Species delimitation Diversity of lichen-forming fungi Professional Experience Since 2017 Vice President, Science & Education, The Field Museum, Chicago. USA 2014-2017 Director, Integrative Research Center, Science & Education, The Field Museum, Chicago, USA. Since 2014 Curator, Integrative Research Center, Science & Education, The Field Museum, Chicago, USA. 2013-2014 Associate Director, Integrative Research Center, Science & Education, The Field Museum, Chicago, USA. 2009-2013 Chair, Dept. of Botany, The Field Museum, Chicago, USA. Since 2011 MacArthur Associate Curator, Dept. of Botany, The Field Museum, Chicago, USA. 2006-2014 Associate Curator, Dept. of Botany, The Field Museum, Chicago, USA. 2005-2009 Head of Cryptogams, Dept. of Botany, The Field Museum, Chicago, USA. Since 2004 Member, Committee on Evolutionary Biology, University of Chicago. Courses: BIOS 430 Evolution (UIC), BIOS 23410 Complex Interactions: Coevolution, Parasites, Mutualists, and Cheaters (U of C) Reading group: Phylogenetic methods. 2003-2006 Assistant Curator, Dept. of Botany, The Field Museum, Chicago, USA. 1998-2003 Privatdozent (Assistant Professor), Botanical Institute, University – GHS - Essen. Lectures: General Botany, Evolution of lower plants, Photosynthesis, Courses: Cryptogams, Biology -
Cladosporium Lebrasiae, a New Fungal Species Isolated from Milk Bread Rolls in France
fungal biology 120 (2016) 1017e1029 journal homepage: www.elsevier.com/locate/funbio Cladosporium lebrasiae, a new fungal species isolated from milk bread rolls in France Josiane RAZAFINARIVOa, Jean-Luc JANYa, Pedro W. CROUSb, Rachelle LOOTENa, Vincent GAYDOUc, Georges BARBIERa, Jerome^ MOUNIERa, Valerie VASSEURa,* aUniversite de Brest, EA 3882, Laboratoire Universitaire de Biodiversite et Ecologie Microbienne, ESIAB, Technopole^ Brest-Iroise, 29280 Plouzane, France bCBS-KNAW Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht, The Netherlands cMeDIAN-Biophotonique et Technologies pour la Sante, Universite de Reims Champagne-Ardenne, FRE CNRS 3481 MEDyC, UFR de Pharmacie, 51 rue Cognacq-Jay, 51096 Reims cedex, France article info abstract Article history: The fungal genus Cladosporium (Cladosporiaceae, Dothideomycetes) is composed of a large Received 12 February 2016 number of species, which can roughly be divided into three main species complexes: Cla- Received in revised form dosporium cladosporioides, Cladosporium herbarum, and Cladosporium sphaerospermum. The 29 March 2016 aim of this study was to characterize strains isolated from contaminated milk bread rolls Accepted 15 April 2016 by phenotypic and genotypic analyses. Using multilocus data from the internal transcribed Available online 23 April 2016 spacer ribosomal DNA (rDNA), partial translation elongation factor 1-a, actin, and beta- Corresponding Editor: tubulin gene sequences along with Fourier-transform infrared (FTIR) spectroscopy and Matthew Charles Fisher morphological observations, three isolates were identified as a new species in the C. sphaer- ospermum species complex. This novel species, described here as Cladosporium lebrasiae,is Keywords: phylogenetically and morphologically distinct from other species in this complex. Cladosporium sphaerospermum ª 2016 British Mycological Society. -
The Fungi of Slapton Ley National Nature Reserve and Environs
THE FUNGI OF SLAPTON LEY NATIONAL NATURE RESERVE AND ENVIRONS APRIL 2019 Image © Visit South Devon ASCOMYCOTA Order Family Name Abrothallales Abrothallaceae Abrothallus microspermus CY (IMI 164972 p.p., 296950), DM (IMI 279667, 279668, 362458), N4 (IMI 251260), Wood (IMI 400386), on thalli of Parmelia caperata and P. perlata. Mainly as the anamorph <it Abrothallus parmeliarum C, CY (IMI 164972), DM (IMI 159809, 159865), F1 (IMI 159892), 2, G2, H, I1 (IMI 188770), J2, N4 (IMI 166730), SV, on thalli of Parmelia carporrhizans, P Abrothallus parmotrematis DM, on Parmelia perlata, 1990, D.L. Hawksworth (IMI 400397, as Vouauxiomyces sp.) Abrothallus suecicus DM (IMI 194098); on apothecia of Ramalina fustigiata with st. conid. Phoma ranalinae Nordin; rare. (L2) Abrothallus usneae (as A. parmeliarum p.p.; L2) Acarosporales Acarosporaceae Acarospora fuscata H, on siliceous slabs (L1); CH, 1996, T. Chester. Polysporina simplex CH, 1996, T. Chester. Sarcogyne regularis CH, 1996, T. Chester; N4, on concrete posts; very rare (L1). Trimmatothelopsis B (IMI 152818), on granite memorial (L1) [EXTINCT] smaragdula Acrospermales Acrospermaceae Acrospermum compressum DM (IMI 194111), I1, S (IMI 18286a), on dead Urtica stems (L2); CY, on Urtica dioica stem, 1995, JLT. Acrospermum graminum I1, on Phragmites debris, 1990, M. Marsden (K). Amphisphaeriales Amphisphaeriaceae Beltraniella pirozynskii D1 (IMI 362071a), on Quercus ilex. Ceratosporium fuscescens I1 (IMI 188771c); J1 (IMI 362085), on dead Ulex stems. (L2) Ceriophora palustris F2 (IMI 186857); on dead Carex puniculata leaves. (L2) Lepteutypa cupressi SV (IMI 184280); on dying Thuja leaves. (L2) Monographella cucumerina (IMI 362759), on Myriophyllum spicatum; DM (IMI 192452); isol. ex vole dung. (L2); (IMI 360147, 360148, 361543, 361544, 361546).