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Biochemical and Functional Analyses of PANX1 Variants
Western University Scholarship@Western Electronic Thesis and Dissertation Repository June 2019 Biochemical and Functional Analyses of PANX1 Variants Daniel Nouri Nejad The University of Western Ontario Supervisor Penuela, Silvia The University of Western Ontario Graduate Program in Anatomy and Cell Biology A thesis submitted in partial fulfillment of the equirr ements for the degree in Master of Science © Daniel Nouri Nejad 2019 Follow this and additional works at: https://ir.lib.uwo.ca/etd Part of the Molecular Biology Commons Recommended Citation Nouri Nejad, Daniel, "Biochemical and Functional Analyses of PANX1 Variants" (2019). Electronic Thesis and Dissertation Repository. 6230. https://ir.lib.uwo.ca/etd/6230 This Dissertation/Thesis is brought to you for free and open access by Scholarship@Western. It has been accepted for inclusion in Electronic Thesis and Dissertation Repository by an authorized administrator of Scholarship@Western. For more information, please contact [email protected]. Abstract Pannexin 1 (PANX1) is a glycoprotein capable of forming large-pore single- membrane channels permeable to signaling molecules such as ATP. In this study, we interrogated different domains by introducing naturally occurring variants reported in melanoma and assessed their impact on the channel function of PANX1 at the cell surface. From this, we discovered a novel tyrosine phosphorylation site at Tyr150, that when disrupted via a missense mutation resulted in hypo-glycosylation and a greater capacity to traffic to the cell-surface and enhanced dye uptake. We have also uncovered a highly conserved ancestral allele, Gln5His, that has a greater allele frequency than the derived allele Gln5 in global and cancer cohorts but was not associated with cancer aggressiveness. -
Airway Inflammation Mitochondrial Dysfunction Increases Allergic
Mitochondrial Dysfunction Increases Allergic Airway Inflammation Leopoldo Aguilera-Aguirre, Attila Bacsi, Alfredo Saavedra-Molina, Alexander Kurosky, Sanjiv Sur and Istvan This information is current as Boldogh of October 1, 2021. J Immunol 2009; 183:5379-5387; Prepublished online 28 September 2009; doi: 10.4049/jimmunol.0900228 http://www.jimmunol.org/content/183/8/5379 Downloaded from References This article cites 61 articles, 11 of which you can access for free at: http://www.jimmunol.org/content/183/8/5379.full#ref-list-1 http://www.jimmunol.org/ Why The JI? Submit online. • Rapid Reviews! 30 days* from submission to initial decision • No Triage! Every submission reviewed by practicing scientists • Fast Publication! 4 weeks from acceptance to publication by guest on October 1, 2021 *average Subscription Information about subscribing to The Journal of Immunology is online at: http://jimmunol.org/subscription Permissions Submit copyright permission requests at: http://www.aai.org/About/Publications/JI/copyright.html Email Alerts Receive free email-alerts when new articles cite this article. Sign up at: http://jimmunol.org/alerts The Journal of Immunology is published twice each month by The American Association of Immunologists, Inc., 1451 Rockville Pike, Suite 650, Rockville, MD 20852 Copyright © 2009 by The American Association of Immunologists, Inc. All rights reserved. Print ISSN: 0022-1767 Online ISSN: 1550-6606. The Journal of Immunology Mitochondrial Dysfunction Increases Allergic Airway Inflammation1 Leopoldo Aguilera-Aguirre,*§ Attila Bacsi,*¶ Alfredo Saavedra-Molina,§ Alexander Kurosky,† Sanjiv Sur,‡ and Istvan Boldogh*2 The prevalence of allergies and asthma among the world’s population has been steadily increasing due to environmental factors. -
Snps) Distant from Xenobiotic Response Elements Can Modulate Aryl Hydrocarbon Receptor Function: SNP-Dependent CYP1A1 Induction S
Supplemental material to this article can be found at: http://dmd.aspetjournals.org/content/suppl/2018/07/06/dmd.118.082164.DC1 1521-009X/46/9/1372–1381$35.00 https://doi.org/10.1124/dmd.118.082164 DRUG METABOLISM AND DISPOSITION Drug Metab Dispos 46:1372–1381, September 2018 Copyright ª 2018 by The American Society for Pharmacology and Experimental Therapeutics Single Nucleotide Polymorphisms (SNPs) Distant from Xenobiotic Response Elements Can Modulate Aryl Hydrocarbon Receptor Function: SNP-Dependent CYP1A1 Induction s Duan Liu, Sisi Qin, Balmiki Ray,1 Krishna R. Kalari, Liewei Wang, and Richard M. Weinshilboum Division of Clinical Pharmacology, Department of Molecular Pharmacology and Experimental Therapeutics (D.L., S.Q., B.R., L.W., R.M.W.) and Division of Biomedical Statistics and Informatics, Department of Health Sciences Research (K.R.K.), Mayo Clinic, Rochester, Minnesota Received April 22, 2018; accepted June 28, 2018 ABSTRACT Downloaded from CYP1A1 expression can be upregulated by the ligand-activated aryl fashion. LCLs with the AA genotype displayed significantly higher hydrocarbon receptor (AHR). Based on prior observations with AHR-XRE binding and CYP1A1 mRNA expression after 3MC estrogen receptors and estrogen response elements, we tested treatment than did those with the GG genotype. Electrophoretic the hypothesis that single-nucleotide polymorphisms (SNPs) map- mobility shift assay (EMSA) showed that oligonucleotides with the ping hundreds of base pairs (bp) from xenobiotic response elements AA genotype displayed higher LCL nuclear extract binding after (XREs) might influence AHR binding and subsequent gene expres- 3MC treatment than did those with the GG genotype, and mass dmd.aspetjournals.org sion. -
Low Abundance of the Matrix Arm of Complex I in Mitochondria Predicts Longevity in Mice
ARTICLE Received 24 Jan 2014 | Accepted 9 Apr 2014 | Published 12 May 2014 DOI: 10.1038/ncomms4837 OPEN Low abundance of the matrix arm of complex I in mitochondria predicts longevity in mice Satomi Miwa1, Howsun Jow2, Karen Baty3, Amy Johnson1, Rafal Czapiewski1, Gabriele Saretzki1, Achim Treumann3 & Thomas von Zglinicki1 Mitochondrial function is an important determinant of the ageing process; however, the mitochondrial properties that enable longevity are not well understood. Here we show that optimal assembly of mitochondrial complex I predicts longevity in mice. Using an unbiased high-coverage high-confidence approach, we demonstrate that electron transport chain proteins, especially the matrix arm subunits of complex I, are decreased in young long-living mice, which is associated with improved complex I assembly, higher complex I-linked state 3 oxygen consumption rates and decreased superoxide production, whereas the opposite is seen in old mice. Disruption of complex I assembly reduces oxidative metabolism with concomitant increase in mitochondrial superoxide production. This is rescued by knockdown of the mitochondrial chaperone, prohibitin. Disrupted complex I assembly causes premature senescence in primary cells. We propose that lower abundance of free catalytic complex I components supports complex I assembly, efficacy of substrate utilization and minimal ROS production, enabling enhanced longevity. 1 Institute for Ageing and Health, Newcastle University, Newcastle upon Tyne NE4 5PL, UK. 2 Centre for Integrated Systems Biology of Ageing and Nutrition, Newcastle University, Newcastle upon Tyne NE4 5PL, UK. 3 Newcastle University Protein and Proteome Analysis, Devonshire Building, Devonshire Terrace, Newcastle upon Tyne NE1 7RU, UK. Correspondence and requests for materials should be addressed to T.v.Z. -
Mouse Mol.Wt.: 48 Kda Panx1 Antibody
#M040570 Panx1 Antibody Order 021-34695924 [email protected] Support 400-6123-828 50ul [email protected] 100 uL Web www.abmart.cn Description: The pannexin gene family encodes a second class of putative gap junction proteins and are highly conserved in invertebrates and mammals. Pannexins (Panx) are four-pass transmembrane proteins that oligomerize to form large pore ion and metabolite-permeable channels. Pannexin-1 (PANX1) and Pannexin-3 are closely related, while Pannexin-2 is a more distant relation. PANX1 is a transmembrane protein that forms a mechanosensitive ATP-permeable channel between adjacent cells and in the endoplasmic reticulum. PANX1 may play a role as a Ca2+ -leak channel to regulate ER Ca2+ homeostasis and regulates neural stem and progenitor cell proliferation. Uniprot: Q96RD7 Alternative Names: innexin; MRS1; Pannexin 1; Panx1; PX1; Specificity: Antibody detects endogenous levels of total PANX1. Reactivity: Human, Mouse, Rat Source: Mouse Mol.Wt.: 48 kDa Storage Condition: Store at -20 °C. Stable for 12 months from date of receipt. 1 For in vitro research use only and not intended for use in humans or animals. Application: WB 1:1000-1:2000;IHC/IF 1:100-1:1000 Western blot analysis of PANX1 expression in SH-SY5Y whole cell lysates, 其他推荐产品 #M20001 His-Tag (2A8) Mouse mAb #M20002 Myc-Tag (19C2) Mouse mAb #M20003 HA-Tag (26D11) Mouse mAb #M20004 GFP-Tag (7G9) Mouse mAb #M20007 GST-Tag (12G8) Mouse mAb #M20008 DYDDDDDK-Tag (3B9) Mouse mAb (Binds to same epitope as Sigma’s Anti- FLAG M2 Antibody) #M20012 Anti-Myc-Tag Mouse mAb (Agarose Conjugated) #M20013 Anti-HA-Tag Mouse mAb (Agarose Conjugated) #M20018 Anti-DYKDDDDK-Tag Mouse Antibody (Agarose Conjugated) (Same as Sigma’s Anti-FLAG M2) #M20118 Anti-DYKDDDDK-Tag Mouse Antibody (Magnetic Beads) (Same as Sigma’s Anti-FLAG M2) 2 For in vitro research use only and not intended for use in humans or animals. -
Inherited Variants in Mitochondrial Biogenesis Genes May Influence Epithelial Ovarian Cancer Risk Jennifer Permuth-Wey1,2, Y. An
Author Manuscript Published OnlineFirst on March 29, 2011; DOI: 10.1158/1055-9965.EPI-10-1224 Author manuscripts have been peer reviewed and accepted for publication but have not yet been edited. Inherited Variants in Mitochondrial Biogenesis Genes May Influence Epithelial Ovarian Cancer Risk Jennifer Permuth-Wey1,2, Y. Ann Chen3 ,Ya-Yu Tsai1, Zhihua Chen4, Xiaotao Qu4, Johnathan M. Lancaster5, Heather Stockwell2, Getachew Dagne2, Edwin Iversen6, Harvey Risch7, Jill Barnholtz-Sloan8, Julie M. Cunningham9, Robert A. Vierkant10, Brooke L. Fridley10, Rebecca Sutphen11, John McLaughlin12, Steven A. Narod13, Ellen L. Goode10, Joellen M. Schildkraut14, David Fenstermacher4, Catherine M. Phelan1, and Thomas A. Sellers1 1Department of Cancer Epidemiology, Moffitt Cancer Center, Tampa, FL, USA. 2 Department of Epidemiology and Biostatistics, College of Public Health, University of South Florida, Tampa, FL, USA. 3 Department of Biostatistics, Moffitt Cancer Center, Tampa, FL, USA. 4 Department of Biomedical Informatics, Moffitt Cancer Center, Tampa, FL, USA. 5 Department of Women’s Oncology, Moffitt Cancer Center, Tampa, FL, USA. 6 Department of Statistical Science, Duke University Medical Center, Durham, NC, USA. 7Department of Epidemiology and Public Health, Yale University School of Medicine, New Haven, CT, USA. 8Case Comprehensive Cancer Center, Case School of Medicine, Cleveland, OH, USA. 9 Department of Laboratory Medicine and Pathology, Mayo Clinic College of Medicine, Rochester, MN, USA. 10Department of Health Sciences Research, Mayo Clinic College of Medicine, Rochester, MN, USA. 11Pediatrics Epidemiology Center, College of Medicine, University of South Florida, Tampa, FL, USA. 12Samuel Lunenfeld Research Institute, Toronto, Ontario, Canada. 13Center for Research in Women’s Health, Toronto, ON, Canada. 14Department of Community and Family Medicine, Duke University Medical Center, Durham, NC, USA. -
UQCRFS1N Assembles Mitochondrial Respiratory Complex-III Into an Asymmetric 21-Subunit Dimer
Protein Cell 2018, 9(6):586–591 https://doi.org/10.1007/s13238-018-0515-x Protein & Cell LETTER TO THE EDITOR UQCRFS1N assembles mitochondrial respiratory complex-III into an asymmetric 21-subunit dimer Dear Editor, Although several structures have been solved with very high resolution, the full length N-terminal processed peptide (1– Mitochondrial respiratory chain consists of four multimeric 78 amino acids, UQCRFS1N) of the iron-sulfur Rieske pro- protein complexes, Complex I-IV (CI, NADH dehydroge- tein (UQCRFS1) subunit has not been assigned in all of nase; CII, succinate:ubiquinone oxidoreductase; CIII, cyto- these structures (Table 1). UQCRFS1N is the N-terminal chrome bc1 complex; and CIV, cytochrome c oxidase). Cell mitochondrial targeting sequence of UQCRFS1, and after its These four complexes transfer electrons from NADH or cleavage from the precursor, this small peptide remains & FADH to oxygen and pump protons from mitochondrial 2 bound to CIII with unknown functions. In this letter, we show matrix to intermembrane space, generating electrochemical that one UQCRFS1N links the two 10-subunit CIII protomers gradient across the inner membrane which is harnessed by together to form the intact CIII, which resultantly contains complex V to synthesize ATP, providing the majority of only 21 subunits rather than previously assumed 22 subunits energy acquired by living organisms. Respiratory chain Protein (Fig. 1A and 1B). complexes were reported to interact with each other to form Firstly, we rebuilt the high-resolution crystal structures of supercomplexes, even megacomplex (Guo et al., 2017). bovine CIII (PDB: 2A06) (Huang et al., 2005) and chicken However, despite decades of intensive research, many CIII (PDB:3TGU) (Hao et al., 2012). -
Differential Expression of Multiple Disease-Related Protein Groups
brain sciences Article Differential Expression of Multiple Disease-Related Protein Groups Induced by Valproic Acid in Human SH-SY5Y Neuroblastoma Cells 1,2, 1, 1 1 Tsung-Ming Hu y, Hsiang-Sheng Chung y, Lieh-Yung Ping , Shih-Hsin Hsu , Hsin-Yao Tsai 1, Shaw-Ji Chen 3,4 and Min-Chih Cheng 1,* 1 Department of Psychiatry, Yuli Branch, Taipei Veterans General Hospital, Hualien 98142, Taiwan; [email protected] (T.-M.H.); [email protected] (H.-S.C.); [email protected] (L.-Y.P.); fi[email protected] (S.-H.H.); [email protected] (H.-Y.T.) 2 Department of Future Studies and LOHAS Industry, Fo Guang University, Jiaosi, Yilan County 26247, Taiwan 3 Department of Psychiatry, Mackay Medical College, New Taipei City 25245, Taiwan; [email protected] 4 Department of Psychiatry, Taitung Mackay Memorial Hospital, Taitung County 95064, Taiwan * Correspondence: [email protected]; Tel.: +886-3888-3141 (ext. 475) These authors contributed equally to this work. y Received: 10 July 2020; Accepted: 8 August 2020; Published: 12 August 2020 Abstract: Valproic acid (VPA) is a multifunctional medication used for the treatment of epilepsy, mania associated with bipolar disorder, and migraine. The pharmacological effects of VPA involve a variety of neurotransmitter and cell signaling systems, but the molecular mechanisms underlying its clinical efficacy is to date largely unknown. In this study, we used the isobaric tags for relative and absolute quantitation shotgun proteomic analysis to screen differentially expressed proteins in VPA-treated SH-SY5Y cells. We identified changes in the expression levels of multiple proteins involved in Alzheimer’s disease, Parkinson’s disease, chromatin remodeling, controlling gene expression via the vitamin D receptor, ribosome biogenesis, ubiquitin-mediated proteolysis, and the mitochondrial oxidative phosphorylation and electron transport chain. -
A High-Throughput Approach to Uncover Novel Roles of APOBEC2, a Functional Orphan of the AID/APOBEC Family
Rockefeller University Digital Commons @ RU Student Theses and Dissertations 2018 A High-Throughput Approach to Uncover Novel Roles of APOBEC2, a Functional Orphan of the AID/APOBEC Family Linda Molla Follow this and additional works at: https://digitalcommons.rockefeller.edu/ student_theses_and_dissertations Part of the Life Sciences Commons A HIGH-THROUGHPUT APPROACH TO UNCOVER NOVEL ROLES OF APOBEC2, A FUNCTIONAL ORPHAN OF THE AID/APOBEC FAMILY A Thesis Presented to the Faculty of The Rockefeller University in Partial Fulfillment of the Requirements for the degree of Doctor of Philosophy by Linda Molla June 2018 © Copyright by Linda Molla 2018 A HIGH-THROUGHPUT APPROACH TO UNCOVER NOVEL ROLES OF APOBEC2, A FUNCTIONAL ORPHAN OF THE AID/APOBEC FAMILY Linda Molla, Ph.D. The Rockefeller University 2018 APOBEC2 is a member of the AID/APOBEC cytidine deaminase family of proteins. Unlike most of AID/APOBEC, however, APOBEC2’s function remains elusive. Previous research has implicated APOBEC2 in diverse organisms and cellular processes such as muscle biology (in Mus musculus), regeneration (in Danio rerio), and development (in Xenopus laevis). APOBEC2 has also been implicated in cancer. However the enzymatic activity, substrate or physiological target(s) of APOBEC2 are unknown. For this thesis, I have combined Next Generation Sequencing (NGS) techniques with state-of-the-art molecular biology to determine the physiological targets of APOBEC2. Using a cell culture muscle differentiation system, and RNA sequencing (RNA-Seq) by polyA capture, I demonstrated that unlike the AID/APOBEC family member APOBEC1, APOBEC2 is not an RNA editor. Using the same system combined with enhanced Reduced Representation Bisulfite Sequencing (eRRBS) analyses I showed that, unlike the AID/APOBEC family member AID, APOBEC2 does not act as a 5-methyl-C deaminase. -
Mrna-Binding Protein Tristetraprolin Is Essential for Cardiac Response To
mRNA-binding protein tristetraprolin is essential for PNAS PLUS cardiac response to iron deficiency by regulating mitochondrial function Tatsuya Satoa,1, Hsiang-Chun Changa,1, Marina Bayevaa, Jason S. Shapiroa, Lucia Ramos-Alonsob, Hidemichi Kouzua, Xinghang Jianga, Ting Liua, Sumeyye Yara, Konrad T. Sawickia, Chunlei Chena, María Teresa Martínez-Pastorc, Deborah J. Stumpod, Paul T. Schumackere, Perry J. Blacksheard, Issam Ben-Sahraf, Sergi Puigb, and Hossein Ardehalia,2 aFeinberg Cardiovascular Research Institute, Feinberg School of Medicine, Northwestern University, Chicago, IL 60611; bDepartamento de Biotecnología, Instituto de Agroquímica y Tecnología de Alimentos, Consejo Superior de Investigaciones Científicas, 46980 Paterna, Valencia, Spain; cDepartamento de Bioquímica y Biología Molecular, Universitat de València, 46100 Burjassot, Valencia, Spain; dSignal Transduction Laboratory, National Institute of Environmental Health Sciences, Research Triangle Park, NC 27709; eDepartment of Pediatrics, Feinberg School of Medicine, Northwestern University, Chicago, IL 60611; and fDepartment of Biochemistry and Molecular Genetics, Feinberg School of Medicine, Northwestern University, Chicago, IL 60611 Edited by J. G. Seidman, Harvard Medical School, Boston, MA, and approved May 23, 2018 (received for review March 23, 2018) Cells respond to iron deficiency by activating iron-regulatory electron transport chain (ETC) (11). However, energy pro- proteins to increase cellular iron uptake and availability. However, duction by oxidative phosphorylation in mitochondria is non- it is not clear how cells adapt to conditions when cellular iron essential for survival, at least in the short term, as demonstrated uptake does not fully match iron demand. Here, we show that the by a switch to anaerobic respiration and heavy reliance on gly- mRNA-binding protein tristetraprolin (TTP) is induced by iron colysis in muscle during vigorous exercise, when oxygen demand deficiency and degrades mRNAs of mitochondrial Fe/S-cluster- outmatches its supply (12). -
Single-Cell Dynamics of Pannexin-1- Facilitated Programmed ATP Loss
RESEARCH ARTICLE Single-cell dynamics of pannexin-1- facilitated programmed ATP loss during apoptosis Hiromi Imamura1†*, Shuichiro Sakamoto1†, Tomoki Yoshida1, Yusuke Matsui2, Silvia Penuela3, Dale W Laird3, Shin Mizukami4, Kazuya Kikuchi2, Akira Kakizuka1 1Graduate School of Biostudies, Kyoto University, Kyoto, Japan; 2Graduate School of Engineering, Osaka University, Suita, Japan; 3Department of Anatomy and Cell Biology, Schulich School of Medicine and Dentistry, University of Western Ontario, London, Canada; 4Institute of Multidisciplinary Research for Advanced Materials, Tohoku University, Sendai, Japan Abstract ATP is essential for all living cells. However, how dead cells lose ATP has not been well investigated. In this study, we developed new FRET biosensors for dual imaging of intracellular ATP level and caspase-3 activity in single apoptotic cultured human cells. We show that the cytosolic ATP level starts to decrease immediately after the activation of caspase-3, and this process is completed typically within 2 hr. The ATP decrease was facilitated by caspase-dependent cleavage of the plasma membrane channel pannexin-1, indicating that the intracellular decrease of the apoptotic cell is a ‘programmed’ process. Apoptotic cells deficient of pannexin-1 sustained the ability to produce ATP through glycolysis and to consume ATP, and did not stop wasting glucose much longer period than normal apoptotic cells. Thus, the pannexin-1 plays a role in arresting the metabolic activity of dead apoptotic cells, most likely through facilitating the loss of intracellular ATP. *For correspondence: [email protected] †These authors contributed equally to this work Introduction Competing interests: The Living cells require energy that is provided by the principal intracellular energy carrier, adenosine-tri- authors declare that no phosphate (ATP). -
Mitochondrial Peptide BRAWNIN Is Essential for Vertebrate Respiratory Complex III Assembly
ARTICLE https://doi.org/10.1038/s41467-020-14999-2 OPEN Mitochondrial peptide BRAWNIN is essential for vertebrate respiratory complex III assembly Shan Zhang1, Boris Reljić 2,12, Chao Liang 1,12, Baptiste Kerouanton1,12, Joel Celio Francisco 3, Jih Hou Peh1, Camille Mary 4, Narendra Suhas Jagannathan 5, Volodimir Olexiouk 6, Claire Tang1, Gio Fidelito 1, Srikanth Nama7, Ruey-Kuang Cheng8, Caroline Lei Wee 9, Loo Chien Wang9, Paula Duek Roggli 10, Prabha Sampath 11, Lydie Lane 4, Enrico Petretto 5, Radoslaw M. Sobota 9, Suresh Jesuthasan 8,9, Lisa Tucker-Kellogg 3,5, Bruno Reversade 7,9, Gerben Menschaert6, Lei Sun 1, David A. Stroud 2 & ✉ Lena Ho 1,7 1234567890():,; The emergence of small open reading frame (sORF)-encoded peptides (SEPs) is rapidly expanding the known proteome at the lower end of the size distribution. Here, we show that the mitochondrial proteome, particularly the respiratory chain, is enriched for small proteins. Using a prediction and validation pipeline for SEPs, we report the discovery of 16 endogenous nuclear encoded, mitochondrial-localized SEPs (mito-SEPs). Through functional prediction, proteomics, metabolomics and metabolic flux modeling, we demonstrate that BRAWNIN, a 71 a.a. peptide encoded by C12orf73, is essential for respiratory chain complex III (CIII) assembly. In human cells, BRAWNIN is induced by the energy-sensing AMPK pathway, and its depletion impairs mitochondrial ATP production. In zebrafish, Brawnin deletion causes complete CIII loss, resulting in severe growth retardation, lactic acidosis and early death. Our findings demonstrate that BRAWNIN is essential for vertebrate oxidative phosphorylation. We propose that mito-SEPs are an untapped resource for essential regulators of oxidative metabolism.