Impacts of Dystrophin and Utrophin Domains on Actin Structural Dynamics: Implications for Therapeutic Design
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Large-Scale Opening of Utrophints Tandem Calponin Homology (CH
Large-scale opening of utrophin’s tandem calponin homology (CH) domains upon actin binding by an induced-fit mechanism Ava Y. Lin, Ewa Prochniewicz, Zachary M. James, Bengt Svensson, and David D. Thomas1 Department of Biochemistry, Molecular Biology and Biophysics, University of Minnesota, Minneapolis, MN 55455 Edited by James A. Spudich, Stanford University School of Medicine, Stanford, CA, and approved June 20, 2011 (received for review April 21, 2011) We have used site-directed spin labeling and pulsed electron has prevented the development of a reliable structural model for paramagnetic resonance to resolve a controversy concerning the any of these complexes. A major unresolved question concerns structure of the utrophin–actin complex, with implications for the the relative disposition of the tandem CH domains (CH1 and pathophysiology of muscular dystrophy. Utrophin is a homolog of CH2) (9, 10). Crystal structures of the tandem CH domains dystrophin, the defective protein in Duchenne and Becker muscular showed a closed conformation for fimbrin (11) and α-actinin (12), dystrophies, and therapeutic utrophin derivatives are currently but an open conformation for both utrophin (Utr261) (Fig. 1A) being developed. Both proteins have a pair of N-terminal calponin and dystrophin (Dys246) (16). The crystal structure of Utr261 homology (CH) domains that are important for actin binding. suggests that the central helical region connecting CH1 and CH2 Although there is a crystal structure of the utrophin actin-binding is highly flexible. Even for α-actinin, which has a closed crystal domain, electron microscopy of the actin-bound complexes has structure, computational analysis suggests the potential for a high produced two very different structural models, in which the CH do- degree of dynamic flexibility that facilitates actin binding (17). -
Multiomic Approaches to Uncover the Complexities of Dystrophin-Associated Cardiomyopathy
International Journal of Molecular Sciences Review Multiomic Approaches to Uncover the Complexities of Dystrophin-Associated Cardiomyopathy Aoife Gowran 1,*, Maura Brioschi 2, Davide Rovina 1 , Mattia Chiesa 3,4 , Luca Piacentini 3,* , Sara Mallia 1, Cristina Banfi 2,* , Giulio Pompilio 1,5,6,* and Rosaria Santoro 1,4 1 Unit of Vascular Biology and Regenerative Medicine, Centro Cardiologico Monzino-IRCCS, 20138 Milan, Italy; [email protected] (D.R.); [email protected] (S.M.); [email protected] (R.S.) 2 Unit of Cardiovascular Proteomics, Centro Cardiologico Monzino-IRCCS, 20138 Milan, Italy; [email protected] 3 Bioinformatics and Artificial Intelligence Facility, Centro Cardiologico Monzino-IRCCS, 20138 Milan, Italy; [email protected] 4 Department of Electronics, Information and Biomedical Engineering, Politecnico di Milano, 20133 Milan, Italy 5 Department of Cardiac Surgery, Centro Cardiologico Monzino-IRCCS, 20138 Milan, Italy 6 Department of Biomedical, Surgical and Dental Sciences, University of Milan, 20122 Milan, Italy * Correspondence: [email protected] (A.G.); [email protected] (L.P.); cristina.banfi@cardiologicomonzino.it (C.B.); [email protected] (G.P.) Abstract: Despite major progress in treating skeletal muscle disease associated with dystrophinopathies, cardiomyopathy is emerging as a major cause of death in people carrying dystrophin gene mutations that remain without a targeted cure even with new treatment directions and advances in modelling Citation: Gowran, A.; Brioschi, M.; abilities. The reasons for the stunted progress in ameliorating dystrophin-associated cardiomyopathy Rovina, D.; Chiesa, M.; Piacentini, L.; (DAC) can be explained by the difficulties in detecting pathophysiological mechanisms which can also Mallia, S.; Banfi, C.; Pompilio, G.; Santoro, R. -
Molecular Genetic Analysis of the Adenomatous Polyposis Coli (APC)
Molecular Genetic Analysis of the Adenomatous Polyposis Coli(APC) gene region by Garret Malcolm Hampton A thesis submitted in requirement for the degree of Doctor of Philosophy at the University of London May, 1992 Cancer Genetics Laboratory (formerly Director's Laboratory) Imperial Cancer Research Fund London and Department of Genetics and Biometry University College London London University Page -1- ProQuest Number: 10609182 All rights reserved INFORMATION TO ALL USERS The quality of this reproduction is dependent upon the quality of the copy submitted. In the unlikely event that the author did not send a com plete manuscript and there are missing pages, these will be noted. Also, if material had to be removed, a note will indicate the deletion. uest ProQuest 10609182 Published by ProQuest LLC(2017). Copyright of the Dissertation is held by the Author. All rights reserved. This work is protected against unauthorized copying under Title 17, United States C ode Microform Edition © ProQuest LLC. ProQuest LLC. 789 East Eisenhower Parkway P.O. Box 1346 Ann Arbor, Ml 48106- 1346 To my parents and my wife, Kate Page -2- Abstract Familial Adenomatous Polyposis (FAP) is a rare, autosomal dominant predisposition to colorectal cancer, affecting about one in ten thousand individuals in all populations studied. The gene responsible for this syndrome, designated APC (for Adenomatous Polyposis Coli) was mapped to 5q21-q22 by linkage analysis following a cytogenetic report of a male patient with polyposis and an interstitial deletion on 5q. The high incidence of allele loss at 5q21-q22 in carcinomas of sporadic patients suggests that mutation of the APC gene is a very frequent step in the tumorigenic pathway to nonfamilial colorectal carcinomas and emphasises the importance of isolating the gene and identifying its function. -
Reevaluating αE-Catenin Monomer and Homodimer Functions By
Saint Mary's College of California Saint Mary's Digital Commons Scholarship, Research, Creative Activities, and School of Science Faculty Works Community Engagement 9-28-2015 Reevaluating αE-catenin monomer and homodimer functions by characterizing E-cadherin/αE-catenin chimeras Julie M. Bianchini Stanford University Khameeka N. Kitt Stanford University, [email protected] Martijn Gloerich Stanford University Sabine Pokutta Stanford University William I. Weis Stanford University Follow this and additional works at: https://digitalcommons.stmarys-ca.edu/school-science-faculty-works Part of the Biology Commons Repository Citation Bianchini, Julie M.; Kitt, Khameeka N.; Gloerich, Martijn; Pokutta, Sabine; and Weis, William I.. Reevaluating αE-catenin monomer and homodimer functions by characterizing E-cadherin/αE-catenin chimeras (2015). Journal of Cellular Biology. 210 (7), 1065-1074. 10.1083/jcb.201411080 [article]. https://digitalcommons.stmarys-ca.edu/school-science-faculty-works/950 This work is licensed under a Creative Commons Attribution-Noncommercial-Share Alike 4.0 License. This Article is brought to you for free and open access by the Scholarship, Research, Creative Activities, and Community Engagement at Saint Mary's Digital Commons. It has been accepted for inclusion in School of Science Faculty Works by an authorized administrator of Saint Mary's Digital Commons. For more information, please contact [email protected]. JCB: Report Reevaluating αE-catenin monomer and homodimer functions by characterizing E-cadherin/αE-catenin chimeras Julie M. Bianchini,1 Khameeka N. Kitt,1 Martijn Gloerich,1 Sabine Pokutta,2 William I. Weis,2,3 and W. James Nelson1,3 1Department of Biology, 2Department of Structural Biology, and 3Department of Molecular and Cellular Physiology, Stanford University, Stanford, CA 94305 As part of the E-cadherin–β-catenin–αE-catenin complex (CCC), mammalian αE-catenin binds F-actin weakly in the absence of force, whereas cytosolic αE-catenin forms a homodimer that interacts more strongly with F-actin. -
Gene Therapy Rescues Cardiac Dysfunction in Duchenne Muscular
JACC: BASIC TO TRANSLATIONAL SCIENCE VOL.4,NO.7,2019 ª 2019 THE AUTHORS. PUBLISHED BY ELSEVIER ON BEHALF OF THE AMERICAN COLLEGE OF CARDIOLOGY FOUNDATION. THIS IS AN OPEN ACCESS ARTICLE UNDER THE CC BY-NC-ND LICENSE (http://creativecommons.org/licenses/by-nc-nd/4.0/). PRECLINICAL RESEARCH Gene Therapy Rescues Cardiac DysfunctioninDuchenneMuscular Dystrophy Mice by Elevating Cardiomyocyte Deoxy-Adenosine Triphosphate a b c d,e Stephen C. Kolwicz, JR,PHD, John K. Hall, PHD, Farid Moussavi-Harami, MD, Xiolan Chen, PHD, d,e b,d,e e,f,g, b,e,g, Stephen D. Hauschka, PHD, Jeffrey S. Chamberlain, PHD, Michael Regnier, PHD, * Guy L. Odom, PHD * VISUAL ABSTRACT Kolwicz, S.C. Jr. et al. J Am Coll Cardiol Basic Trans Science. 2019;4(7):778–91. HIGHLIGHTS rAAV vectors increase cardiac-specific expression of RNR and elevate cardiomyocyte 2-dATP levels. Elevated myocardial RNR and subsequent increase in 2-dATP rescues the performance of failing myocardium, an effect that persists long term. ISSN 2452-302X https://doi.org/10.1016/j.jacbts.2019.06.006 JACC: BASIC TO TRANSLATIONAL SCIENCE VOL. 4, NO. 7, 2019 Kolwicz, Jr., et al. 779 NOVEMBER 2019:778– 91 Nucleotide-Based Cardiac Gene Therapy Restores Function in dmd Mice We show the ability to increase both cardiac baseline function and high workload contractile performance in ABBREVIATIONS aged (22- to 24-month old) mdx4cv mice, by high-level muscle-specific expression of either microdystrophin AND ACRONYMS or RNR. mDys = microdystrophin Five months post-treatment, mice systemically injected with rAAV6 vector carrying a striated muscle-specific CK8 regulatory cassette driving expression of microdystrophin in both skeletal and cardiac muscle, exhibited the = miniaturized murine creatine kinase regulatory greatest effect on systolic function. -
Snapshot: Actin Regulators II Anosha D
SnapShot: Actin Regulators II Anosha D. Siripala and Matthew D. Welch Department of Molecular and Cell Biology, University of California, Berkeley, CA 94720, USA Representative Proteins Protein Family H. sapiens D. melanogaster C. elegans A. thaliana S. cerevisiae Endocytosis and Exocytosis ABP1/drebrin mABP1, drebrin, drebrin- †Q95RN0 †Q9XUT0 Abp1 like EPS15 EPS15 Eps-15 EHS-1 †Q56WL2 Pan1 HIP1R HIP1R †Q8MQK1 †O62142 Sla2 Synapsin synapsin Ia, Ib, IIa, IIb, III Synapsin SNN-1 Plasma Membrane Association Anillin anillin Scraps ANI-1, 2, 3 Annexins annexin A1–11, 13 (actin Annexin B9-11 NEX-1–4 ANN1-8 binding: 1, 2, 6) ERM proteins ezrin, radixin, moesin DMoesin ERM-1 MARCKS MARCKS, MRP/ Akap200 MACMARCKS/F52 Merlin *merlin/NF2 Merlin NFM-1 Protein 4.1 4.1R, G, N, B Coracle Spectrin α-spectrin (1–2), β-spectrin α-spectrin, β-spectrin, β heavy- SPC-1 (α-spectrin), UNC-70 (1–4), β heavy-spectrin/ spectrin/Karst (β-spectrin), SMA-1 (β heavy- karst spectrin) Identifi ed Cellular Role: X Membrane traffi cking and phagocytosis Cell-Cell Junctions X Cytokinesis α-catenin α-catenin 1–3 α-catenin HMP-1 X Cell surface organization and dynamics X Cell adhesion Afadin afadin/AF6 Canoe AFD-1 X Multiple functions ZO-1 ZO-1, ZO-2, ZO-3 ZO-1/Polychaetoid †Q56VX4 X Other/unknown Cell-Extracellular Matrix Junctions †UNIPROT database accession number *Mutation linked to human disease Dystrophin/utrophin *dystrophin, utrophin/ Dystrophin DYS-1 DRP1, DRP2 LASP LASP-1, LASP-2, LIM- Lasp †P34416 nebulette Palladin palladin Parvin α-, β-, χ-parvin †Q9VWD0 PAT-6 -
N2A Titin: Signaling Hub and Mechanical Switch in Skeletal Muscle
International Journal of Molecular Sciences Review N2A Titin: Signaling Hub and Mechanical Switch in Skeletal Muscle Kiisa Nishikawa 1,* , Stan L. Lindstedt 1, Anthony Hessel 2 and Dhruv Mishra 1 1 Department of Biological Sciences, Northern Arizona University, Flagstaff, AZ 86011-5640, USA; [email protected] (S.L.L.); [email protected] (D.M.) 2 Institute of Physiology II, University of Münster, 48149 Münster, Germany; [email protected] * Correspondence: [email protected]; Tel.: +1-928-523-9497 Received: 12 May 2020; Accepted: 1 June 2020; Published: 1 June 2020 Abstract: Since its belated discovery, our understanding of the giant protein titin has grown exponentially from its humble beginning as a sarcomeric scaffold to recent recognition of its critical mechanical and signaling functions in active muscle. One uniquely useful model to unravel titin’s functions, muscular dystrophy with myositis (mdm), arose spontaneously in mice as a transposon-like LINE repeat insertion that results in a small deletion in the N2A region of titin. This small deletion profoundly affects hypertrophic signaling and muscle mechanics, thereby providing insights into the function of this specific region and the consequences of its dysfunction. The impact of this mutation is profound, affecting diverse aspects of the phenotype including muscle mechanics, developmental hypertrophy, and thermoregulation. In this review, we explore accumulating evidence that points to the N2A region of titin as a dynamic “switch” that is critical for both mechanical and signaling functions in skeletal muscle. Calcium-dependent binding of N2A titin to actin filaments triggers a cascade of changes in titin that affect mechanical properties such as elastic energy storage and return, as well as hypertrophic signaling. -
Diagnosis and Cell-Based Therapy for Duchenne Muscular Dystrophy in Humans, Mice, and Zebrafish
J Hum Genet (2006) 51:397–406 DOI 10.1007/s10038-006-0374-9 MINIREVIEW Louis M. Kunkel Æ Estanislao Bachrach Richard R. Bennett Æ Jeffrey Guyon Æ Leta Steffen Diagnosis and cell-based therapy for Duchenne muscular dystrophy in humans, mice, and zebrafish Received: 3 January 2006 / Accepted: 4 January 2006 / Published online: 1 April 2006 Ó The Japan Society of Human Genetics and Springer-Verlag 2006 Abstract The muscular dystrophies are a heterogeneous mutants carries a stop codon mutation in dystrophin, group of genetically caused muscle degenerative disor- and we have recently identified another carrying a ders. The Kunkel laboratory has had a longstanding mutation in titin. We are currently positionally cloning research program into the pathogenesis and treatment of the disease-causative mutation in the remaining 12 mu- these diseases. Starting with our identification of dys- tant strains. We hope that one of these new mutant trophin as the defective protein in Duchenne muscular strains of fish will have a mutation in a gene not previ- dystrophy (DMD), we have continued our work on ously implicated in human muscular dystrophy. This normal dystrophin function and how it is altered in gene would become a candidate gene to be analyzed in muscular dystrophy. Our work has led to the identifi- patients which do not carry a mutation in any of the cation of the defective genes in three forms of limb girdle known dystrophy-associated genes. By studying both muscular dystrophy (LGMD) and a better understand- disease pathology and investigating potential therapies, ing of how muscle degenerates in many of the different we hope to make a positive difference in the lives of dystrophies. -
Oxime Intercepts GSK3 Signaling to Promote and Enhance Skeletal
www.nature.com/scientificreports There are amendments to this paper OPEN 6-Bromoindirubin-3′-oxime intercepts GSK3 signaling to promote and enhance skeletal muscle diferentiation afecting miR-206 expression in mice Elvira Ragozzino1,7, Mariarita Brancaccio1,2,7, Antonella Di Costanzo1, Francesco Scalabrì1, Gennaro Andolf4, Luca G. Wanderlingh1,3, Eduardo J. Patriarca4, Gabriella Minchiotti 4, Sergio Altamura5,9, Vincenzo Summa5,6,8 & Francesca Varrone1,8* Dystrophies are characterized by progressive skeletal muscle degeneration and weakness as consequence of their molecular abnormalities. Thus, new drugs for restoring skeletal muscle deterioration are critically needed. To identify new and alternative compounds with a functional role in skeletal muscle myogenesis, we screened a library of pharmacologically active compounds and selected the small molecule 6-bromoindirubin-3′-oxime (BIO) as an inhibitor of myoblast proliferation. Using C2C12 cells, we examined BIO’s efect during myoblast proliferation and diferentiation showing that BIO treatment promotes transition from cell proliferation to myogenic diferentiation through the arrest of cell cycle. Here, we show that BIO is able to promote myogenic diferentiation in damaged myotubes in-vitro by enriching the population of newly formed skeletal muscle myotubes. Moreover, in-vivo experiments in CTX-damaged TA muscle confrmed the pro-diferentiation capability of BIO as shown by the increasing of the percentage of myofbers with centralized nuclei as well as by the increasing of myofbers number. Additionally, we have identifed a strong correlation of miR-206 with BIO treatment both in-vitro and in-vivo: the enhanced expression of miR-206 was observed in-vitro in BIO-treated proliferating myoblasts, miR-206 restored expression was observed in a forced miR-206 silencing conditions antagomiR-mediated upon BIO treatment, and in-vivo in CTX-injured muscles miR-206 enhanced expression was observed upon BIO treatment. -
Review Increasing Complexity of the Dystrophin-Associated Protein Complex Jonathon M
Proc. Nadl. Acad. Sci. USA Vol. 91, pp. 8307-8313, August 1994 Review Increasing complexity of the dystrophin-associated protein complex Jonathon M. Tinsley, Derek J. Blake, Richard A. Zuellig, and Kay E. Davies Molecular Genetics Group, Institute of Molecular Medicine, John Radcliffe Hospital, Headington, Oxford OX3 9DU, United Kingdom ABSTRACT Duchenne muscular dys- Purkinje neurons. Alternatively spliced dystrophin-1 (Dp7l) and apo-dystro- trophy is a severe X chromosome-linked, isoforms originating from the carboxyl- phin-3 are regulated by a promoter situ- muscle-wasting disease caused by lack of terminal coding region ofdystrophin have ated between exons 62 and 63 of the the protein dystrophin. The exact function also been described. The significance of dystrophin gene and are expressed in of dystrophin rem to be determined. these isoforms at the RNA and protein nonmuscle tissues, including brain, lung, However, analysis of its interaction with a level has not been elucidated. liver, and kidney. Apo-dystrophin-1 tran- large oligomeric protein complex at the Dystrophin is a 427-kDa protein local- scripts are only detectable in fetal and sarcolemma and the identicaton of a ized to the cytoplasmic face of the sar- newborn muscle. Muscle samples taken structurally related protein, utrophin, is colemma, enriched at myotendinous after 15 days postnatally have no apo- leading to the characterization ofcandidate junctions and the postsynaptic mem- dystrophin-1 transcript as determined by genes for other neuromusular disorders. brane of the neuromuscular junction reverse transcription-PCR. In rat brain, (NMJ). Dystrophin colocalizes with apo-dystrophin-1 transcripts continue in- Duchenne muscular dystrophy (DMD) is f3-spectrin and vinculin in three distinct creasing until they reach a maximum the most common muscular dystrophy, domains at the sarcolemma (overlaying after -1 mo. -
Modulation of Canonical Wnt Signaling by the Extracellular Matrix Component Biglycan
Modulation of canonical Wnt signaling by the extracellular matrix component biglycan Agnes D. Berendsena, Larry W. Fishera, Tina M. Kiltsa, Rick T. Owensb, Pamela G. Robeya, J. Silvio Gutkindc, and Marian F. Younga,1 aCraniofacial and Skeletal Diseases Branch, National Institute of Dental and Craniofacial Research, National Institutes of Health, Bethesda, MD 20892; bLifeCell Corporation, Branchburg, NJ 08876; and cOral and Pharyngeal Cancer Branch, National Institute of Dental and Craniofacial Research, National Institutes of Health, Bethesda, MD 20892 Edited by Darwin J. Prockop, Texas A&M Health Science Center, Temple, TX, and approved September 9, 2011 (received for review July 1, 2011) Although extracellular control of canonical Wnt signaling is crucial is stabilized within the cytosol and then translocated to the nu- for tissue homeostasis, the role of the extracellular microenviron- cleus, where it accumulates and activates lymphoid enhancer- ment in modulating this signaling pathway is largely unknown. In binding factor/T cell-specific factor (TCF)-mediated gene tran- the present study, we show that a member of the small leucine- scription. The extracellular microenvironment that regulates rich proteoglycan family, biglycan, enhances canonical Wnt sig- this pathway by modulating the activity of Wnt proteins and/or naling by mediating Wnt function via its core protein. Immuno- their antagonists remains largely unknown. In this regard, precipitation analysis revealed that biglycan interacts with both several different proteoglycans and/or their glycosaminoglycan the canonical Wnt ligand Wnt3a and the Wnt coreceptor low- chain components that are abundantly present at the cell sur- density lipoprotein receptor-related protein 6 (LRP6), possibly face have been reported to stimulate the Wnt/β-catenin path- via the formation of a trimeric complex. -
The Journal of Neuroscience August 18, 2010 • Volume 30 Number 33 •
The Journal of Neuroscience August 18, 2010 • Volume 30 Number 33 • www.jneurosci.org i This Week in The Journal Brief Communications 11028 Lobster Attack Induces Sensitization in the Sea Hare, Aplysia californica Amanda J. Watkins, Daniel A. Goldstein, Lucy C. Lee, Christina J. Pepino, Scott L. Tillett, Francis E. Ross, Elizabeth M. Wilder, Virginia A. Zachary, and William G. Wright 11057 Impaired Speech Repetition and Left Parietal Lobe Damage Julius Fridriksson, Olafur Kjartansson, Paul S. Morgan, Haukur Hjaltason, Sigridur Magnusdottir, Leonardo Bonilha, and Christopher Rorden Cover legend: A ring of neuronal cell bodies with 11062 Longitudinal Evidence for Functional Specialization of the Neural Circuit Supporting dendrites oriented toward the cell-free center. Such Working Memory in the Human Brain aggregates are formed in the developing mouse Amy S. Finn, Margaret A. Sheridan, Carla L. Hudson Kam, Stephen Hinshaw, cerebral cortex when Reelin is expressed ectopically and Mark D’Esposito via in utero electroporation. Magenta cells express 11068 The Scaffold Protein NHERF2 Determines the Coupling of P2Y1 Nucleotide and Reelin and green fluorescent protein. Nuclei (gray) mGluR5 Glutamate Receptor to Different Ion Channels in Neurons were labeled with propidium iodide. For more Alexander K. Filippov, Joseph Simon, Eric A. Barnard, and David A. Brown information, see the article by Kubo et al. in this issue (pages 10953–10966). 11151 Motoneurons Dedicated to Either Forward or Backward Locomotion in the Nematode Caenorhabditis elegans Gal Haspel, Michael J. O’Donovan, and Anne C. Hart 11197 Direction-Selective Ganglion Cells Show Symmetric Participation in Retinal Waves During Development Justin Elstrott and Marla B.