Smut Fungi in Africa – a Checklist
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Vascular Plant Survey of Vwaza Marsh Wildlife Reserve, Malawi
YIKA-VWAZA TRUST RESEARCH STUDY REPORT N (2017/18) Vascular Plant Survey of Vwaza Marsh Wildlife Reserve, Malawi By Sopani Sichinga ([email protected]) September , 2019 ABSTRACT In 2018 – 19, a survey on vascular plants was conducted in Vwaza Marsh Wildlife Reserve. The reserve is located in the north-western Malawi, covering an area of about 986 km2. Based on this survey, a total of 461 species from 76 families were recorded (i.e. 454 Angiosperms and 7 Pteridophyta). Of the total species recorded, 19 are exotics (of which 4 are reported to be invasive) while 1 species is considered threatened. The most dominant families were Fabaceae (80 species representing 17. 4%), Poaceae (53 species representing 11.5%), Rubiaceae (27 species representing 5.9 %), and Euphorbiaceae (24 species representing 5.2%). The annotated checklist includes scientific names, habit, habitat types and IUCN Red List status and is presented in section 5. i ACKNOLEDGEMENTS First and foremost, let me thank the Nyika–Vwaza Trust (UK) for funding this work. Without their financial support, this work would have not been materialized. The Department of National Parks and Wildlife (DNPW) Malawi through its Regional Office (N) is also thanked for the logistical support and accommodation throughout the entire study. Special thanks are due to my supervisor - Mr. George Zwide Nxumayo for his invaluable guidance. Mr. Thom McShane should also be thanked in a special way for sharing me some information, and sending me some documents about Vwaza which have contributed a lot to the success of this work. I extend my sincere thanks to the Vwaza Research Unit team for their assistance, especially during the field work. -
Axpcoords & Parallel Axparafit: Statistical Co-Phylogenetic Analyses
BMC Bioinformatics BioMed Central Software Open Access AxPcoords & parallel AxParafit: statistical co-phylogenetic analyses on thousands of taxa Alexandros Stamatakis*1,2, Alexander F Auch3, Jan Meier-Kolthoff3 and Markus Göker4 Address: 1École Polytechnique Fédérale de Lausanne, School of Computer & Communication Sciences, Laboratory for Computational Biology and Bioinformatics STATION 14, CH-1015 Lausanne, Switzerland, 2Swiss Institute of Bioinformatics, 3Center for Bioinformatics (ZBIT), Sand 14, Tübingen, University of Tübingen, Germany and 4Organismic Botany/Mycology, Auf der Morgenstelle 1, Tübingen, University of Tübingen, Germany Email: Alexandros Stamatakis* - [email protected]; Alexander F Auch - [email protected]; Jan Meier- Kolthoff - [email protected]; Markus Göker - [email protected] * Corresponding author Published: 22 October 2007 Received: 26 June 2007 Accepted: 22 October 2007 BMC Bioinformatics 2007, 8:405 doi:10.1186/1471-2105-8-405 This article is available from: http://www.biomedcentral.com/1471-2105/8/405 © 2007 Stamatakis et al.; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Abstract Background: Current tools for Co-phylogenetic analyses are not able to cope with the continuous accumulation of phylogenetic data. The sophisticated statistical test for host-parasite co-phylogenetic analyses implemented in Parafit does not allow it to handle large datasets in reasonable times. The Parafit and DistPCoA programs are the by far most compute-intensive components of the Parafit analysis pipeline. -
Competing Sexual and Asexual Generic Names in <I
doi:10.5598/imafungus.2018.09.01.06 IMA FUNGUS · 9(1): 75–89 (2018) Competing sexual and asexual generic names in Pucciniomycotina and ARTICLE Ustilaginomycotina (Basidiomycota) and recommendations for use M. Catherine Aime1, Lisa A. Castlebury2, Mehrdad Abbasi1, Dominik Begerow3, Reinhard Berndt4, Roland Kirschner5, Ludmila Marvanová6, Yoshitaka Ono7, Mahajabeen Padamsee8, Markus Scholler9, Marco Thines10, and Amy Y. Rossman11 1Purdue University, Department of Botany and Plant Pathology, West Lafayette, IN 47901, USA; corresponding author e-mail: maime@purdue. edu 2Mycology & Nematology Genetic Diversity and Biology Laboratory, USDA-ARS, Beltsville, MD 20705, USA 3Ruhr-Universität Bochum, Geobotanik, ND 03/174, D-44801 Bochum, Germany 4ETH Zürich, Plant Ecological Genetics, Universitätstrasse 16, 8092 Zürich, Switzerland 5Department of Biomedical Sciences and Engineering, National Central University, 320 Taoyuan City, Taiwan 6Czech Collection of Microoorganisms, Faculty of Science, Masaryk University, 625 00 Brno, Czech Republic 7Faculty of Education, Ibaraki University, Mito, Ibaraki 310-8512, Japan 8Systematics Team, Manaaki Whenua Landcare Research, Auckland 1072, New Zealand 9Staatliches Museum f. Naturkunde Karlsruhe, Erbprinzenstr. 13, D-76133 Karlsruhe, Germany 10Senckenberg Gesellschaft für Naturforschung, Frankfurt (Main), Germany 11Department of Botany & Plant Pathology, Oregon State University, Corvallis, OR 97333, USA Abstract: With the change to one scientific name for pleomorphic fungi, generic names typified by sexual and Key words: asexual morphs have been evaluated to recommend which name to use when two names represent the same genus Basidiomycetes and thus compete for use. In this paper, generic names in Pucciniomycotina and Ustilaginomycotina are evaluated pleomorphic fungi based on their type species to determine which names are synonyms. Twenty-one sets of sexually and asexually taxonomy typified names in Pucciniomycotina and eight sets in Ustilaginomycotina were determined to be congeneric and protected names compete for use. -
Grass Genera in Townsville
Grass Genera in Townsville Nanette B. Hooker Photographs by Chris Gardiner SCHOOL OF MARINE and TROPICAL BIOLOGY JAMES COOK UNIVERSITY TOWNSVILLE QUEENSLAND James Cook University 2012 GRASSES OF THE TOWNSVILLE AREA Welcome to the grasses of the Townsville area. The genera covered in this treatment are those found in the lowland areas around Townsville as far north as Bluewater, south to Alligator Creek and west to the base of Hervey’s Range. Most of these genera will also be found in neighbouring areas although some genera not included may occur in specific habitats. The aim of this book is to provide a description of the grass genera as well as a list of species. The grasses belong to a very widespread and large family called the Poaceae. The original family name Gramineae is used in some publications, in Australia the preferred family name is Poaceae. It is one of the largest flowering plant families of the world, comprising more than 700 genera, and more than 10,000 species. In Australia there are over 1300 species including non-native grasses. In the Townsville area there are more than 220 grass species. The grasses have highly modified flowers arranged in a variety of ways. Because they are highly modified and specialized, there are also many new terms used to describe the various features. Hence there is a lot of terminology that chiefly applies to grasses, but some terms are used also in the sedge family. The basic unit of the grass inflorescence (The flowering part) is the spikelet. The spikelet consists of 1-2 basal glumes (bracts at the base) that subtend 1-many florets or flowers. -
Taxonomy and Distribution of Microbotryum Pinguiculae, a Species of Smut Fungi New for the Carpathians
Polish Botanical Journal 50(2): 153–158, 2005 TAXONOMY AND DISTRIBUTION OF MICROBOTRYUM PINGUICULAE, A SPECIES OF SMUT FUNGI NEW FOR THE CARPATHIANS MARCIN PIĄTEK, WIESŁAW MUŁENKO, JOLANTA PIĄTEK & KAMILA BACIGÁLOVÁ Abstract. Microbotryum pinguiculae (Rostr.) Vánky on Pinguicula alpina L., a rarely collected smut fungus belonging to the genus Microbotryales in the class Urediniomycetes, is reported for the fi rst time from the Carpathians as well as from Poland and Slovakia. The species is described and illustrated by a drawing of infected plants and SEM micrographs of spores. Microbotryum pinguiculae is a very rare fungus parasitizing various species of Pinguicula (Lentibulariaceae). It is known from Europe, Asia and North America, where it shows a true arctic-alpine type of distribution. Taxonomically its generic position is not completely stabilized and needs further studies employing modern techniques (e.g., molecular, ultrastructural). Key words: Microbotryum, Pinguicula alpina, smut fungi, Microbotryales, Urediniomycetes, Carpathians, Poland, Slovakia Marcin Piątek, Department of Mycology, W. Szafer Institute of Botany, Polish Academy of Sciences, Lubicz 46, PL-31-512 Kraków, Poland; e-mail: [email protected] Wiesław Mułenko, Department of General Botany, Maria Curie-Skłodowska University, Akademicka 19, PL-20-033 Lublin, Poland; e-mail: [email protected] Jolanta Piątek, Department of Phycology, W. Szafer Institute of Botany, Polish Academy of Sciences, Lubicz 46, PL-31-512 Kraków, Poland; e-mail: [email protected] Kamila Bacigálová, Institute of Botany, Slovak Academy of Sciences, Dúbravská cesta 14, SK-845-23 Bratislava, Slovak Republic; e-mail: [email protected] INTRODUCTION In the current circumscription, the smut genus species occurs in other populations of Pinguicula Microbotryum Lév. -
Diversidad Y Distribución De La Familia Asteraceae En México
Taxonomía y florística Diversidad y distribución de la familia Asteraceae en México JOSÉ LUIS VILLASEÑOR Botanical Sciences 96 (2): 332-358, 2018 Resumen Antecedentes: La familia Asteraceae (o Compositae) en México ha llamado la atención de prominentes DOI: 10.17129/botsci.1872 botánicos en las últimas décadas, por lo que cuenta con una larga tradición de investigación de su riqueza Received: florística. Se cuenta, por lo tanto, con un gran acervo bibliográfico que permite hacer una síntesis y actua- October 2nd, 2017 lización de su conocimiento florístico a nivel nacional. Accepted: Pregunta: ¿Cuál es la riqueza actualmente conocida de Asteraceae en México? ¿Cómo se distribuye a lo February 18th, 2018 largo del territorio nacional? ¿Qué géneros o regiones requieren de estudios más detallados para mejorar Associated Editor: el conocimiento de la familia en el país? Guillermo Ibarra-Manríquez Área de estudio: México. Métodos: Se llevó a cabo una exhaustiva revisión de literatura florística y taxonómica, así como la revi- sión de unos 200,000 ejemplares de herbario, depositados en más de 20 herbarios, tanto nacionales como del extranjero. Resultados: México registra 26 tribus, 417 géneros y 3,113 especies de Asteraceae, de las cuales 3,050 son especies nativas y 1,988 (63.9 %) son endémicas del territorio nacional. Los géneros más relevantes, tanto por el número de especies como por su componente endémico, son Ageratina (164 y 135, respecti- vamente), Verbesina (164, 138) y Stevia (116, 95). Los estados con mayor número de especies son Oaxa- ca (1,040), Jalisco (956), Durango (909), Guerrero (855) y Michoacán (837). Los biomas con la mayor riqueza de géneros y especies son el bosque templado (1,906) y el matorral xerófilo (1,254). -
(Gramineae) Background Concerned, It
BLUMEA 31 (1986) 281-307 Generic delimitationof Rottboelliaand related genera (Gramineae) J.F. Veldkamp R. de Koning & M.S.M. Sosef Rijksherbarium,Leiden, The Netherlands Summary Generic delimitations within the Rottboelliastrae Stapf and Coelorachidastrae Clayton (for- mal name) are revised. Coelorachis Brongn., Hackelochloa O. Ktze, Heteropholis C.E. Hubb., in Ratzeburgia Kunth, and Rottboellia formosa R. Br, are to be included Mnesithea Kunth. Heteropholis cochinchinensis (Lour.) Clayton and its variety chenii (Hsu) Sosef & Koning are varieties of Mnesithea laevis (Retz.) Kunth. Robynsiochloa Jacq.-Félix is to be included in Rottboellia L.f. The necessary new combinations, a list of genera and representative species, and a key to the genera are given. In the Appendix a new species of Rottboellia, R. paradoxa Koning & Sosef, is described from the Philippines. The enigmatic species Rottboellia villosa Poir. is transferred to Schizachyrium villosum (Poir.) Veldk., comb. nov. Introduction Historical background The of the within the of taxa delimitation genera group represented by Rottboel- lia L. f. and its closest relatives, here taken in the sense of Clayton (1973), has always posed a considerable problem. former In times Rottboellia contained many species. It was divided up in various the of Hackel seemed most ways, but system 5 subgenera as proposed by (1889) authoritative: Coelorachis (Brongn.) Hack., Hemarthria (R. Br.) Hack., Peltophorus (Desv.) HackPhacelurus (Griseb.) Hack., and Thyrsostachys Hack. When at the end of the last century and in the beginning of the present one many large grass genera were split up, e.g. Andropogon, Panicum, Stapf (1917) raised Hackel's subgenera to generic rank, reviving some old names formerly treated as synonyms, and created several new of the of other unable finish his ones. -
Mykologie in Tübingen 1974-2011
Mykologie am Lehrstuhl Spezielle Botanik und Mykologie der Universität Tübingen, 1974-2011 FRANZ OBERWINKLER Kurzfassung Wir beschreiben die mykologischen Forschungsaktivitäten am ehemaligen Lehrstuhl „Spezielle Botanik und Mykologie“ der Universität Tübingen von 1974 bis 2011 und ihrer internationalen Ausstrahlung. Leitschiene unseres gemeinsamen mykologischen Forschungskonzeptes war die Verknüpfung von Gelände- mit Laborarbeiten sowie von Forschung mit Lehre. Dieses Konzept spiegelte sich in einem weit gefächerten Lehrangebot, das insbesondere den Pflanzen als dem Hauptsubstrat der Pilze breiten Raum gab. Lichtmikroskopische Untersuchungen der zellulären Baupläne von Pilzen bildeten das Fundament für unsere Arbeiten: Identifikationen, Ontogeniestudien, Vergleiche von Mikromorphologien, Überprüfen von Kulturen, Präparateauswahl für Elektronenmikroskopie, etc. Bereits an diesen Beispielen wird die Methodenvernetzung erkennbar. In dem zu besprechenden Zeitraum wurden Ultrastrukturuntersuchungen und Nukleinsäuresequenzierungen als revolutionierende Methoden für den täglichen Laborbetrieb verfügbar. Flankiert wurden diese Neuerungen durch ständig verbesserte Datenaufbereitungen und Auswertungsprogramme für Computer. Zusammen mit den traditionellen Anwendungen der Lichtmikroskopie und der Kultivierung von Pilzen stand somit ein effizientes Methodenspektrum zur Verfügung, das für systematische, phylogenetische und ökologische Fragestellungen gleichermaßen eingesetzt werden konnte, insbesondere in der Antibiotikaforschung, beim Studium zellulärer -
Chromosome Numbers in Compositae, XII: Heliantheae
SMITHSONIAN CONTRIBUTIONS TO BOTANY 0 NCTMBER 52 Chromosome Numbers in Compositae, XII: Heliantheae Harold Robinson, A. Michael Powell, Robert M. King, andJames F. Weedin SMITHSONIAN INSTITUTION PRESS City of Washington 1981 ABSTRACT Robinson, Harold, A. Michael Powell, Robert M. King, and James F. Weedin. Chromosome Numbers in Compositae, XII: Heliantheae. Smithsonian Contri- butions to Botany, number 52, 28 pages, 3 tables, 1981.-Chromosome reports are provided for 145 populations, including first reports for 33 species and three genera, Garcilassa, Riencourtia, and Helianthopsis. Chromosome numbers are arranged according to Robinson’s recently broadened concept of the Heliantheae, with citations for 212 of the ca. 265 genera and 32 of the 35 subtribes. Diverse elements, including the Ambrosieae, typical Heliantheae, most Helenieae, the Tegeteae, and genera such as Arnica from the Senecioneae, are seen to share a specialized cytological history involving polyploid ancestry. The authors disagree with one another regarding the point at which such polyploidy occurred and on whether subtribes lacking higher numbers, such as the Galinsoginae, share the polyploid ancestry. Numerous examples of aneuploid decrease, secondary polyploidy, and some secondary aneuploid decreases are cited. The Marshalliinae are considered remote from other subtribes and close to the Inuleae. Evidence from related tribes favors an ultimate base of X = 10 for the Heliantheae and at least the subfamily As teroideae. OFFICIALPUBLICATION DATE is handstamped in a limited number of initial copies and is recorded in the Institution’s annual report, Smithsonian Year. SERIESCOVER DESIGN: Leaf clearing from the katsura tree Cercidiphyllumjaponicum Siebold and Zuccarini. Library of Congress Cataloging in Publication Data Main entry under title: Chromosome numbers in Compositae, XII. -
Comparative Morphology of the Male Genitalia in Lepidoptera
COMPARATIVE MORPHOLOGY OF THE MALE GENITALIA IN LEPIDOPTERA. By DEV RAJ MEHTA, M. Sc.~ Ph. D. (Canta.b.), 'Univefsity Scholar of the Government of the Punjab, India (Department of Zoology, University of Oambridge). CONTENTS. PAGE. Introduction 197 Historical Review 199 Technique. 201 N ontenclature 201 Function • 205 Comparative Morphology 206 Conclusions in Phylogeny 257 Summary 261 Literature 1 262 INTRODUCTION. In the domains of both Morphology and Taxonomy the study' of Insect genitalia has evoked considerable interest during the past half century. Zander (1900, 1901, 1903) suggested a common structural plan for the genitalia in various orders of insects. This work stimulated further research and his conclusions were amplified by Crampton (1920) who homologized the different parts in the genitalia of Hymenoptera, Mecoptera, Neuroptera, Diptera, Trichoptera Lepidoptera, Hemiptera and Strepsiptera with those of more generalized insects like the Ephe meroptera and Thysanura. During this time the use of genitalic charac ters for taxonomic purposes was also realized particularly in cases where the other imaginal characters had failed to serve. In this con nection may be mentioned the work of Buchanan White (1876), Gosse (1883), Bethune Baker (1914), Pierce (1909, 1914, 1922) and others. Also, a comparative account of the genitalia, as a basis for the phylo genetic study of different insect orders, was employed by Walker (1919), Sharp and Muir (1912), Singh-Pruthi (1925) and Cole (1927), in Orthop tera, Coleoptera, Hemiptera and the Diptera respectively. It is sur prising, work of this nature having been found so useful in these groups, that an important order like the Lepidoptera should have escaped careful analysis at the hands of the morphologists. -
<I>Thecaphora Capensis</I>
Persoonia 21, 2008: 147–152 www.persoonia.org RESEARCH ARTICLE doi:10.3767/003158508X387462 Thecaphora capensis sp. nov., an unusual new anther smut on Oxalis in South Africa F. Roets 1, L.L. Dreyer 2, M.J. Wingfield 3, D. Begerow 4 Key words Abstract The smut genus Thecaphora contains plant parasitic microfungi that typically infect very specific plant organs. In this study, we describe a new species of Thecaphora from Oxalis lanata var. rosea (Oxalidaceae) in the anther-smut Cape Floristic Region of South Africa. Molecular phylogenetic reconstructions based on large subunit ribosomal Cape Floristic Region DNA sequence data confirmed the generic placement of the fungus and confirmed that it represents an undescribed Oxalis species for which the name T. capensis sp. nov. is provided. The closest known sister species of the new taxon is phylogeny T. oxalidis that infects the fruits of Oxalis spp. in Europe, Asia and the Americas. In contrast, T. capensis produces Thecaphora teliospores within the anthers of its host. This is the first documented case of an anther-smut from an African spe- cies of Oxalis and the first Thecaphora species described from Africa. Article info Received: 24 August 2008; Accepted: 30 October 2008; Published: 10 November 2008. INTRODUCTION The smut genus Thecaphora resides in the Glomosporiaceae (Goldblatt & Manning 2000) and the largest bulbous genus in (Bauer et al. 2001, Vánky et al. 2008) and includes c. 60 de- the region. The CFR Oxalis spp. flower during the wet winter scribed species. Species of Thecaphora produce sori within months (April to August), and escape the drier summer months various plant organs including seeds, flowers, leaves, stems below ground, only to emerge again at the onset of the next and roots. -
Catalogue of the Type Specimens of Lepidoptera Rhopalocera in the Hill Museum
Original from and digitized by National University of Singapore Libraries Original from and digitized by National University of Singapore Libraries Original from and digitized by National University of Singapore Libraries Original from and digitized by National University of Singapore Libraries CATALOGUE OF THE Type Specimens of Lepidoptera Rhopalocera IN THE HILL MUSEUM BY A. G. GABRIEL, F.E.S. Issued June, 1932 LONDON JOHN BALE, SONS & DANIELSSON, LTD. 83-91, GBEAT TITCHFIELD STEEET, OXEOED STEEET, W. 1 1932 Price 20/- Original from and digitized by National University of Singapore Libraries Unfortunately Mr. Joicey did not live to see the publication of this Catalogue. It will however remain, together with the four completed volumes of the " Bulletin of the Hill Museum," as a lasting memorial to to the magnificent collection of Lepidoptera amassed by Mr. Joicey, and to the work carried out at the Hill Museum under his auspices. G. Talbot. Original from and digitized by National University of Singapore Libraries CATALOGUE OF THE TYPE SPECIMENS OF LEPIDOPTERA RHOPALOCERA IN THE HILL MUSEUM. By A. G. GABRIEL, F.E.S. INTRODUCTION BY G. TALBOT. It is important to know exactly where type specimens are to be found. The British Museum set an example by publishing catalogues of some of their Rhopalocera types, and we hope this will be continued. Mr. Gabriel, who was responsible for that work, has been asked by Mr. Joicey to prepare a catalogue for the Hill Museum. The original description of almost every name in this catalogue has been examined for the correct reference, and where the sex or habitat was wrongly quoted, the necessary correction has been made.