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Full List of PCAWG Consortium Working Groups and Writing Supplementary information to: Genomics: data sharing needs an international code of conduct To accompany a Comment published in Nature 578, 31–33 (2020) https://www.nature.com/articles/d41586-020-00082-9 By Mark Phillips, Fruzsina Molnár-Gábor, Jan O. Korbel, Adrian Thorogood, Yann Joly, Don Chalmers, David Townend & Bartha M. Knoppers for the PCAWG Consortium. SUPPLEMENTARY INFORMATION | NATURE | 1 The ICGC/TCGA Pan-Cancer Analysis of Whole Genomes (PCAWG) Consortium Working Groups PCAWG Steering committee 1,2 3,4,5,6 7,8 9,10 Peter J Campbell# ,​ Gad Getz# ,​ Jan O Korbel# ,​ Lincoln D Stein# ​ and Joshua M ​ ​ ​ ​ ​ ​ ​ ​ ​ ​ ​ ​ Stuart#11,12 ​ ​ PCAWG Head of project management Jennifer L Jennings13 ​ PCAWG Executive committee 14 15 16 17 18 Sultan T Al-Sedairy ,​ Axel Aretz ,​ Cindy Bell ,​ Miguel Betancourt ,​ Christiane Buchholz ,​ 19 ​ ​ 20 ​ 21 ​ 22 23 ​ Fabien Calvo ,​ Christine Chomienne ,​ Michael Dunn ,​ Stuart Edmonds ,​ Eric Green ,​ Shailja 24 ​ 23 ​ 25 ​ 13 ​ 26 ​ Gupta ,​ Carolyn M Hutter ,​ Karine Jegalian ,​ Jennifer L Jennings ,​ Nic Jones ,​ Hyung-Lae 27 ​ 28,29,30 ​ 31​ 32 ​ ​ 32 26 Kim ,​ Youyong Lu ,​ Hitoshi Nakagama ,​ Gerd Nettekoven ,​ Laura Planko ,​ David Scott ,​ ​ 3​ 3,34 35 ​ 9,10 ​ 1 ​ ​ 35 Tatsuhiro Shibata ,​ Kiyo Shimizu ,​ Lincoln D Stein# ,​ Michael R Stratton ,​ Takashi Yugawa ,​ ​ 36,37 ​ ​ 24 ​ ​ 38 ​ 39 ​ Giampaolo Tortora ,​ K VijayRaghavan ,​ Huanming Yang ​ and Jean C Zenklusen ​ ​ ​ ​ PCAWG Ethics and Legal Working Group 40 41 41 42 41 Don Chalmers# ,​ Yann Joly ,​ Bartha M Knoppers# ,​ Fruzsina Molnár-Gábor ,​ Mark Phillips ,​ ​ ​ 41 ​ ​ 43 ​ ​ ​ ​ Adrian Thorogood ​ and David Townend ​ ​ PCAWG Technical Working Group 44 45 46,47 7 7 Brice Aminou ,​ Javier Bartolome ,​ Keith A Boroevich ,​ Rich Boyce ,​ Alvis Brazma ,​ Angela N 3,11,12,48 ​ 49 ​ 50,51,52 ​ 1 ​ 44 ​ Brooks ,​ Alex Buchanan ,​ Ivo Buchhalter ,​ Adam P Butler ,​ Niall J Byrne ,​ Andy ​ 7 1,​2 ​ 53 54 ​ 55 ​ 1 Cafferkey ,​ Peter J Campbell ,​ Zhaohong Chen ,​ Sunghoon Cho ,​ Wan Choi ,​ Peter Clapham ,​ ​ 56 ​ ​ 57,58,59 ​ ​ 60,61 ​ Brandi N Davis-Dusenbery ,​ Francisco M De La Vega ,​ Jonas Demeulemeester ,​ Michelle 53 ​ 9,62 63,64 ​ 50,52,63,64 49 ​ T Dow ,​ Lewis Jonathan Dursi ,​ Juergen Eils ,​ Roland Eils ,​ Kyle Ellrott ,​ Claudiu ​53 44​ ​ 44,65 ​ 7 ​ 7,66 Farcas ,​ Nodirjon Fayzullaev ,​ Vincent Ferretti ,​ Paul Flicek ,​ Nuno A Fonseca ,​ Josep L L 45​ ,67 3,4,5,6 ​ 68 ​ ​ 69,70 ​ 71 Gelpi ,​ Gad Getz ,​ Robert L Grossman ,​ Olivier Harismendy ,​ Allison P Heath ,​ Michael ​ 50,52 ​ 3,72 ​ 73 ​ 74 ​ 75,76 C Heinold ,​ Julian M Hess ,​ Oliver Hofmann ,​ Jongwhi H Hong ,​ Thomas J Hudson ,​ ​ 77,78,79 ​ 23 ​ 52,63,80​ ,81,82 83 ​ Barbara Hutter ,​ Carolyn M Hutter ,​ Daniel Hübschmann ,​ Seiya Imoto ,​ Sinisa 56 ​ 55 9 ​ 84 ​ 50 85​ ,86,87,88,89 Ivkovic ,​ Seung-Hyup Jeon ,​ Wei Jiao ,​ Jongsun Jung ,​ Rolf Kabbe ,​ Andre Kahles ,​ ​ 50 ​ ​ 27 ​ 55 ​ 90 ​ 91,92 Jules NA Kerssemakers ,​ Hyung-Lae Kim ,​ Hyunghwan Kim ,​ Jihoon Kim ,​ Youngwook Kim ,​ ​ ​ ​ ​ ​ 50,52 7,8 93 53 56 Kortine Kleinheinz ,​ Jan O Korbel ,​ Michael Koscher ,​ Antonios Koures ,​ Milena Kovacevic ,​ 64 ​ ​3 94 ​ 3 ​ 44 ​ Chris Lawerenz ,​ Ignaty Leshchiner ,​ Jia Liu ,​ Dimitri Livitz ,​ George L Mihaiescu ,​ Sanja 56 ​ ​ ​ 56 ​ 83 83 ​ Mijalkovic ,​ Ana Mijalkovic Mijalkovic-Lazic ,​ Satoru Miyano ,​ Naoki Miyoshi ,​ Hardeep K ​ 44 47 ​ 56 ​ 7 ​ 1 Nahal-Bose ,​ Hidewaki Nakagawa ,​ Mia Nastic ,​ Steven J Newhouse ,​ Jonathan Nicholson ,​ ​ 44,95 ​ 7 ​ 83 ​ 53 ​ Brian D O'Connor# ,​ David Ocana ,​ Kazuhiro Ohi ,​ Lucila Ohno-Machado ,​ Larsson 96 ​ ​ 44,97 ​ ​ 50,78 ​ 44,98 99 Omberg ,​ BF Francis Ouellette ,​ Nagarajan Paramasivam ,​ Marc D Perry ,​ Todd D Pihl ,​ ​ 50 ​ 45 56 ​ 1 ​ 3,6,100​ Manuel Prinz ,​ Montserrat Puiggròs ,​ Petar Radovic ,​ Keiran M Raine ,​ Esther Rheinbay ,​ ​ 3,100 45 ​ 85​ ,86,87,88,89,101 ​ 3 ​ Mara Rosenberg ,​ Romina Royo ,​ Gunnar Rätsch ,​ Gordon Saksena ,​ Matthias 50,102 ​ 9 ​ 7 ​ 23 ​ 103 Schlesner ,​ Solomon I Shorser ,​ Charles Short ,​ Heidi J Sofia ,​ Jonathan Spring ,​ Lincoln D 9,10 ​ 104 ​ 3 ​ 56 ​ 45,105 ​ ​ Stein# ,​ Adam J Struck ,​ Grace Tiao ,​ Nebojsa Tijanic ,​ David Torrents ,​ Peter Van 60,​ 61​ 4​ 5,106 ​ 45 ​ 3,6,48 ​ 39 Loo ,​ Miguel Vazquez ,​ David Vicente ,​ Jeremiah A Wala ,​ Zhining Wang ,​ Sebastian ​ 8 ​ 8,107,108 ​ 50,1​09 5​ 3 M Waszak ,​ Joachim Weischenfeldt ,​ Johannes Werner ,​ Ashley Williams ,​ ​ 55 9​ 44 ​ 8 ​ 39 Youngchoon Woo ,​ Adam J Wright ,​ Qian Xiang ,​ Sergei Yakneen# ,​ Liming Yang ,​ Denis 9 ​ 44 ​ 44 ​ ​ ​ ​ ​ Yuen ,​ Christina K Yung# ​ and Junjun Zhang# ​ ​ ​ ​ ​ ​ ​ PCAWG Reference Annotations Working Group 3,11,12,48 50,51,52 1,2 110,111 Angela N Brooks ,​ Ivo Buchhalter ,​ Peter J Campbell ,​ Priyanka Dhingra ,​ Lars 112 ​ 113,114,115 ​ 3,4,5,6 ​ 116 ​ 117 Feuerbach ,​ Mark Gerstein ,​ Gad Getz ,​ Mark P Hamilton ,​ Henrik Hornshøj ,​ ​ 46 ​ 85,86,87,88,89 ​ 118,119,120​ 3,121 ​ Todd A Johnson ,​ Andre Kahles ,​ Abdullah Kahraman ,​ Manolis Kellis ,​ Ekta 110,111,12​ 2,123 ​ 7,8 117​ ​ 117,124​ Khurana# ,​ Jan O Korbel ,​ Morten Muhlig Nielsen ,​ Jakob Skou Pedersen ,​ Paz 3,4,6 ​ ​ 9,125 ​ 3,6,100 ​ 1 85,8​ 6,87,88,89,101 Polak ,​ Jüri Reimand ,​ Esther Rheinbay ,​ Nicola D Roberts ,​ Gunnar Rätsch ,​ ​ 3 ​ 3,59 ​ 45,105 ​ 4​ 5,106 Richard Sallari ,​ Nasa Sinnott-Armstrong ,​ Alfonso Valencia ,​ Miguel Vazquez ,​ ​ 8 ​ 8,107,108 ​ 120,126​ Sebastian M Waszak ,​ Joachim Weischenfeldt ​ and Christian von Mering ​ ​ ​ PCAWG Quality-Control Working Group 127,128 50,51,52 1,2 50,52,63,64 Sergi Beltran ,​ Ivo Buchhalter ,​ Peter J Campbell ,​ Roland Eils ,​ Daniela S 129 ​ 3,4,5,6 ​ 127,128 127,1​ 28 ​ 77,78,79 Gerhard ,​ Gad Getz ,​ Ivo G Gut# ,​ Marta Gut ,​ Barbara Hutter ,​ Daniel ​ 52,63,80,81,8​ 2 ​ ​ ​ 50,52 ​ 7,8 3​ 44,98 Hübschmann ,​ Kortine Kleinheinz ,​ Jan O Korbel ,​ Dimitri Livitz ,​ Marc D Perry ,​ ​ 1 3,6,100 ​ 3,100​ ​ 3 ​ Keiran M Raine ,​ Esther Rheinbay ,​ Mara Rosenberg ,​ Gordon Saksena ,​ Matthias 50,102 ​ 1​ 27,128 ​ 127 ​ 50,109 Schlesner ,​ Miranda D Stobbe ,​ Jean-Rémi Trotta ,​ Johannes Werner ​ and Justin P ​ ​ ​ ​ Whalley127 ​ PCAWG SNV Calling Working Group 130,131 132 78,133 9,125,134,135 Matthew H Bailey ,​ Beifang Niu ,​ Matthias Bieg ,​ Paul C Boutros ,​ Ivo 50,51,52 ​ 1 ​ 136 ​ 137 1​ 30,131,138 Buchhalter ,​ Adam P Butler ,​ Ken Chen ,​ Zechen Chong ,​ Li Ding# ,​ Oliver 128​,139 ​ 9,62 ​ 50,52,63,64 ​ ​ 49​ ​ 9 Drechsel ,​ Lewis Jonathan Dursi ,​ Roland Eils ,​ Kyle Ellrott ,​ Shadrielle MG Espiritu ,​ 140​ 130,131,138 ​ 38 ​ 45,67 ​ 113,114,115 ​ Yu Fan ,​ Robert S Fulton ,​ Shengjie Gao ,​ Josep L L Gelpi ,​ Mark Gerstein ,​ Gad 3,4,​5,6 ​ 7,8 127,128 ​ 141,142 ​ 50,​ 52 Getz ,​ Santiago Gonzalez ,​ Ivo G Gut ,​ Faraz Hach ,​ Michael C Heinold ,​ Julian M ​3,72 1 ​ 143 ​ 9 ​ 144,145 ​ 77,78,79 Hess ,​ Jonathan Hinton ,​ Taobo Hu ,​ Vincent Huang ,​ Yi Huang ,​ Barbara Hutter ,​ ​ ​ ​ ​ ​ ​ 1 84 50 27 50,52 David R Jones ,​ Jongsun Jung ,​ Natalie Jäger ,​ Hyung-Lae Kim ,​ Kortine Kleinheinz ,​ Sushant 114,115 ​ 143​ ​ 9 ​ 3 ​ 146 Kumar ,​ Yogesh Kumar ,​ Christopher M Lalansingh ,​ Ignaty Leshchiner ,​ Ivica Letunic ,​ ​ 3 143 ​ 3,72,100 ​ 131,147 ​ 130​,131,138 Dimitri Livitz ,​ Eric Z Ma ,​ Yosef E Maruvka ,​ R Jay Mashl ,​ Michael D McLellan ,​ ​ 1 ​ 45 ​ 1​17 128,139​,148 Andrew Menzies ,​ Ana Milovanovic ,​ Morten Muhlig Nielsen ,​ Stephan Ossowski ,​ ​ 50,78 ​ 117,124 ​ 44,98 ​ Nagarajan Paramasivam ,​ Jakob Skou Pedersen ,​ Marc D Perry ,​ Montserrat 45 ​ 1 3,6,100 ​ 45 ​ 142,149,150 Puiggròs ,​ Keiran M Raine ,​ Esther Rheinbay ,​ Romina Royo ,​ S Cenk Sahinalp ,​ ​ 3 ​ 142,150 ​ 50,102 ​ 9,151​ Gordon Saksena ,​ Iman Sarrafi ,​ Matthias Schlesner ,​ Jared T Simpson# ,​ Lucy 1 ​ 3 ​ 127,128 ​ ​ 1 3​ ​ Stebbings ,​ Chip Stewart ,​ Miranda D Stobbe ,​ Jon W Teague ,​ Grace Tiao ,​ David 45​ ,105 ​ 3,6,48 ​ 131,145,152 ​ 140 ​ 8 Torrents ,​ Jeremiah A Wala ,​ Jiayin Wang ,​ Wenyi Wang ,​ Sebastian M Waszak ,​ ​ 8,107,108 ​ 1​ 31,138,153 ​ 50,109 ​ Joachim Weischenfeldt ,​ Michael C Wendl ,​ Johannes Werner ,​ David A 154,155 ​ 143 143 ​ 8 ​ 9 Wheeler ,​ Zhenggang Wu ,​ Hong Xue ,​ Sergei Yakneen ,​ Takafumi N Yamaguchi ,​ Kai 152,156 ​ ​ 138,157 ​ 44 ​ 44 ​ Ye ,​ Venkata D Yellapantula ,​ Christina K Yung ​ and Junjun Zhang ​ ​ ​ ​ PCAWG Drivers and Functional Interpretation Working Group 1 158,159,160 10 3,161,162 Federico Abascal ,​ Samirkumar B Amin ,​ Gary D Bader ,​ Pratiti Bandopadhayay ,​ ​ 9 ​ 3,6,163 ​ 117,164 4​ 6,47 Jonathan Barenboim ,​ Rameen Beroukhim ,​ Johanna Bertl ,​ Keith A Boroevich ,​ Søren 165,166 ​ 1,2 ​ 167,168,169 ​ 170 ​ Brunak ,​ Peter J Campbell ,​ Joana Carlevaro-Fita ,​ Dimple Chakravarty ,​ Calvin ​ 50,171 1​36 172 ​ 173,174 ​ 110,111 Wing Yiu Chan ,​ Ken Chen ,​ Jung Kyoon Choi ,​ Jordi Deu-Pons ,​ Priyanka Dhingra ,​ 1​75 ​ 112 45,1​76 ​ 7,66 173 ​ Klev Diamanti ,​ Lars Feuerbach ,​ J Lynn Fink ,​ Nuno A Fonseca ,​ Joan Frigola ,​ Carlo ​ 177 ​ 178 ​ 113,114,115 ​ 3,4,5,6 ​ Gambacorti-Passerini ,​ Dale W Garsed ,​ Mark Gerstein# ,​ Gad Getz# ,​ Qianyun 124 127,128​ 11 ​ ​ 116 ​ ​ ​ ​ ​ 3,100 Guo ,​ Ivo G Gut ,​ David Haan ,​ Mark P Hamilton ,​ Nicholas J Haradhvala ,​ Arif O ​ 115,179 ​ 18​0 50,52​ ,181 3,72 ​ 124,164 Harmanci ,​ Mohamed Helmy ,​ Carl Herrmann ,​ Julian M Hess ,​ Asger Hobolth ,​ ​ 150 112,171 ​ 11​ 7 9,125 ​ 18​ 2 Ermin Hodzic ,​ Chen Hong ,​ Henrik Hornshøj ,​ Keren Isaev ,​ Jose MG Izarzugaza ,​ ​ 168,183 ​ 46 ​117 ​ 117 ​ Rory Johnson ,​ Todd A Johnson ,​ Malene Juul ,​ Randi Istrup Juul ,​ Andre 85,86,87,88​ ,89 ​ 118,119,120 ​ 3,121 ​ 110,111,122,123
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