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Burkhard Rost CV BURKHARD ROST TUM Informatics/Bioinformatics i12 Boltzmannstrasse 3 (Rm 01.09.052) 85748 Garching/München, Germany & Dept. Biochemistry & Molecular Biophysics Columbia University New York, USA Email [email protected] Tel +49-89-289-17-811 Photo: © Eckert & Heddergott, TUM Web www.rostlab.org Fax +49-89-289-19-414 Document: CV Burkhard Rost TU München Affiliation: Columbia University TOC: • Tabulated curriculum vitae • Grants • List of publications Highlights by numbers: • 186 invited talks in 29 countries (incl. TedX) • 250 publications (187 peer-review, 168 first/last author) • Google Scholar 2016/01: 30,502 citations, h-index=80, i10=179 • PredictProtein 1st Internet server in mol. biol. (since 1992) • 8 years ISCB President (International Society for Computational Biology) • 143 trained (29% female, 50% foreigners from 32 nations on 6 continents) Brief narrative: Burkhard Rost obtained his doctoral degree (Dr. rer. nat.) from the Univ. of Heidelberg (Germany) in the field of theoretical physics. He began his research working on the thermo-dynamical properties of spin glasses and brain-like artificial neural networks. A short project on peace/arms control research sketched a simple, non-intrusive sensor networks to monitor aircraft (1988-1990). He entered the field of molecular biology at the European Molecular Biology Laboratory (EMBL, Heidelberg, Germany, 1990-1995), spent a year at the European Bioinformatics Institute (EBI, Hinxton, Cambridgshire, England, 1995), returned to the EMBL (1996-1998), joined the company LION Biosciences for a brief interim (1998), became faculty in the Medical School of Columbia University in 1998, and joined the TUM Munich to become an Alexander von Humboldt professor in 2009. In 1992, Dr. Rost developed the first Internet server for protein structure prediction (PredictProtein). Since, his group has contributed many highly used and original methods for the prediction of aspects of protein function and structure. His major contribution has been the combination of machine learning and evolutionary information. His academic research goal focuses on the development of top tools that can be applied in the context of analyzing entirely sequence organisms. Recently, has been focusing on the analysis of the effects of sequence variation and their implications for precision medicine and personalized health. Details: http://www.rostlab.org/ status Jan 19, 2016 1 Burkhard Rost Tabulated CV Tabulated Curriculum Vitae Date of preparation: Jan 19, 2016 Name: Burkhard Rost Gender: Male Marital Status: Married with one daughter (born Dec. 2002) Citizenship: German Birthplace: Northeim, Lower-Saxony, Germany Current position: Professor, Unit chair Address TUM, Department for Computer Sciences (Informatik) Unit for Bioinformatics & Computational Biology (i12) Boltzmannstrasse 3, 85748 Garching/Munich, Germany tel.: +49-89-289-17-811 email: [email protected] Education 1971-1980 High school, Herzberg, Lower-Saxony, Germany 1980-1982 Obligatory service in German air force 1982-1985 Study of physics at Justus-Liebig-University Gießen, Hessia, Germany 10/1984 Bachelor in physics 1985-1988 Study of physics at Ruprecht-Karls-University Heidelberg, Germany 1985-1988 Study of philosophy, history and psychology at Heidelberg University 1986-1988 Master thesis at the Institute of Theoretical Physics, Heidelberg Univ. Topic: 'Learning algorithms for spin-glass-like neural networks' Sponsor: Prof. Dr. Heinz Horner, Heidelberg 11/1988 Bachelor in philosophy and history, Heidelberg University 12/1988 Master in physics, Heidelberg University 12/88-06/90 Grant of the 'Stiftung Volkswagenwerk' (VW Foundation), Inst. Theor. Physics, Heidelberg Topic: 'Theoretical analysis of the possibilities of seismic and acoustical sensor networks to verify arms control treaties for aircraft' 07-10/89 Research project in the USA (Princeton, Washington DC, MIT) 1990-1993 Completing studies in physics, Heidelberg Univ. and EMBL, Germany 07/1993 Writing PhD thesis Topic: 'Neural networks and evolution - prediction of protein secondary structure' Sponsor: none ◊ 07/1994 PhD in physics: Viva voce for Dr. rer. nat. (Doctor rerum naturarum) at Institute for Theoretical Physics, Ruprecht-Karl University Heidelberg, Germany ◊ Over 600 years, Heidelberg University has allowed scholars to present a doctoral thesis on any research subject independent of any sponsor. Apparently, I was the first who exercised this right over at least the last 60 years. 2 Burkhard Rost Tabulated CV Professional Positions 1986-1988 Assistant at Institute for Theoretical Physics, Heidelberg Univ., Germany 12/88-06/90 Research fellow at Inst. for Theoretical Physics, Heidelberg Univ. 07-10/1989 Visitor at Institutes in the USA (Princeton, U. of Concerned Scientists, MIT) 07/90- 1992 Visitor at EMBL Heidelberg, Germany 07/93-12/94 Research fellow at EMBL Heidelberg, Germany 01/95-12/95 Research fellow at EBI Hinxton, Cambridge, England 01/96- 04/98 Research fellow at EMBL Heidelberg, Germany 05/98-11/98 Researcher at LION Biosciences Heidelberg, Germany 12/98- 05/00 Assistant Professor at Department of Biochemistry and Molecular Biophysics, Columbia University, New York, USA 07/2000-2010 Associate Professor at Dept. of Biochemistry & Mol. Biophys., Columbia 2004-2010 Affiliated Faculty, Dept. of Medical Bioinformatics, Columbia University 2002-2010 Faculty Center of Computational Biology and Bioinformatics (C2B2) 07/2005-2010 Tenure in Dept. of Biochemistry and Mol. Biophysics at Columbia University 2006-2010 Associated Faculty in the Department of Pharmacology at Columbia Univ. 2006-2010 Associated Faculty in the Irving Center of Cancer Research at Columbia since 06/2009 Alexander von Humboldt Professor in Department for Computer Sciences at the TUM Munich, Germany since 06/2009 Fellow at the Institute for Advanced Studies, IAS-TUM, Germany since 02/2012 Affiliate Prof., Inst. Food & Plant Sciences WZW - Weihenstephan, Germany Professional Organizations and Societies 1995-now Program Committee of ISMB (Intelligent Systems for Molecular Biology) 1996-now Member of ISCB (International Society for Computational Biology) 2002-now Board of Directors ISCB (International Society for Computational Biology) 2002-now Member of NYAS (New York Academy of Sciences) 2005-2006 Vice President ISCB (International Soc. for Computational Biology) 2006 President Elect of ISCB (International Society for Computational Biology) 2007-2014 President of the ISCB (International Society for Computational Biology) Professional Experiences 1992-now Over 500 referee reports for peer-reviewed journals (including Nature, Science, PNAS, Cell, EMBO J) 1995-now Over 50 reviews of grants from individuals and institutes (countries: Austria, Canada, Denmark, England, Germany, Israel, Italy, Norway, Netherlands, Singapore, Spain, Sweden, Switzerland, USA); ad hoc panels for NIH and NSF, including role as chairman. 2001-now Ad-hoc panels for grants from the NIH, NSF and the European Community 2005-2009 Associate Editor of PLoS Computational Biology 2006-now Associate Editor of Bioinformatics 2006-now Associate Editor of Proteins: Structure, Function, and Bioinformatics 2009-now Deputy Editor of PLoS Computational Biology 3 Burkhard Rost Tabulated CV 2005-now Editorial Board of FASEB (representative from ISCB) 2006-now Editorial Board of Journal of Structural and Functional Genomics 2007-now Editorial Board of Bioinformatics and Biology Insights 2001-2006 Editorial Board of Journal of Medical Informatics 2002, 2005 Editor for ISMB (Intelligent Systems for Molecular Biology) proceedings 2004-2006 Editorial Board of Proteins: Structure, Function, and Bioinformatics 2005-2006 Editorial Board of Bioinformatics 2002-2007 Organization of New York Computational Biology Society in the New York Academy of Sciences 1999-2005 SAB for company LION Biosciences, Heidelberg/Cambridge UK 2004-now Co-founder, CEO of BioSof, Delaware, USA Invited Talks (186 invited talks in 29 countries) 12/1988 London, England: Workshop on Arms Control 09/1989 Washington, DC, USA: Union of Concerned Scientists 10/1989 Princeton, USA: Institute for Advanced Studies 05/1990 Prague, CSFR: Workshop on Arms Control 09/1990 Vienna, Austria: Conference on Arms Control 010/1990 Mosbach, Germany: Conference on Arms Control 06/1992 Elba, Italy: Conference on Neural Networks 07/1992 Torino, Italy: Conference on Protein Structure Prediction 11/1992 Nijmegen, Netherlands: EU Conference on Sequence Analysis 06/1993 Rennes, France: Workshop on Secondary Structure Prediction 11/1993 Copenhagen, DK: Conf. on 'Protein Structure by Distance Analysis' 01/1994 Mauii, Hawaii, USA: HICCS Conference 03/1994 Bologna, Italy: Conference on Protein Structures 04/1994 Copenhagen, Denmark: Mini-symposium on structure prediction 11/1994 Bielefeld, Germany: University 11/1994 Copenhagen, DK: Conf. on 'Protein Structure by Distance Analysis' 12/1994 Asilomar, USA: CASP1 06/1995 Cambridge, England: ISMB'95 (Tutorial) 06/1995 Heidelberg, Germany: University 10/1995 Bressanone, Italy: Workshop on Protein Structures 10/1995 IRBM Rome, Italy: Workshop 'Frontiers of protein structure prediction' 11/1995 Paris, France: Workshop on Protein Structures and Drug Design 06/1996 St. Louis, USA: ISMB'96 08/1996 Madrid, Spain: CNB 10/1996 Heidelberg, Germany: University 11/1996 Copenhagen, Denmark: Protein Structure by Distance Analysis 12/1996 New York, USA: Columbia University 12/1996 Asilomar, USA: University of San Francisco 4 Burkhard Rost Tabulated CV 01/1997
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