Possibility and Challenges of Conversion of Current Virus Species Names to Linnaean Binomials Thomas S
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Entry and Early Infection of Non-Segmented Negative Sense Rna Viruses
University of Kentucky UKnowledge Theses and Dissertations--Molecular and Cellular Biochemistry Molecular and Cellular Biochemistry 2021 ENTRY AND EARLY INFECTION OF NON-SEGMENTED NEGATIVE SENSE RNA VIRUSES Jean Mawuena Branttie University of Kentucky, [email protected] Digital Object Identifier: https://doi.org/10.13023/etd.2021.248 Right click to open a feedback form in a new tab to let us know how this document benefits ou.y Recommended Citation Branttie, Jean Mawuena, "ENTRY AND EARLY INFECTION OF NON-SEGMENTED NEGATIVE SENSE RNA VIRUSES" (2021). Theses and Dissertations--Molecular and Cellular Biochemistry. 54. https://uknowledge.uky.edu/biochem_etds/54 This Doctoral Dissertation is brought to you for free and open access by the Molecular and Cellular Biochemistry at UKnowledge. It has been accepted for inclusion in Theses and Dissertations--Molecular and Cellular Biochemistry by an authorized administrator of UKnowledge. For more information, please contact [email protected]. STUDENT AGREEMENT: I represent that my thesis or dissertation and abstract are my original work. Proper attribution has been given to all outside sources. I understand that I am solely responsible for obtaining any needed copyright permissions. I have obtained needed written permission statement(s) from the owner(s) of each third-party copyrighted matter to be included in my work, allowing electronic distribution (if such use is not permitted by the fair use doctrine) which will be submitted to UKnowledge as Additional File. I hereby grant to The University of Kentucky and its agents the irrevocable, non-exclusive, and royalty-free license to archive and make accessible my work in whole or in part in all forms of media, now or hereafter known. -
Comparative Evolutionary and Phylogenomic Analysis of Avian Avulaviruses 1 to 20
Accepted Manuscript Comparative evolutionary and phylogenomic analysis of Avian avulaviruses 1 to 20 Aziz-ul-Rahman, Muhammad Munir, Muhammad Zubair Shabbir PII: S1055-7903(17)30947-8 DOI: https://doi.org/10.1016/j.ympev.2018.06.040 Reference: YMPEV 6223 To appear in: Molecular Phylogenetics and Evolution Received Date: 1 January 2018 Revised Date: 15 May 2018 Accepted Date: 25 June 2018 Please cite this article as: Aziz-ul-Rahman, Munir, M., Zubair Shabbir, M., Comparative evolutionary and phylogenomic analysis of Avian avulaviruses 1 to 20, Molecular Phylogenetics and Evolution (2018), doi: https:// doi.org/10.1016/j.ympev.2018.06.040 This is a PDF file of an unedited manuscript that has been accepted for publication. As a service to our customers we are providing this early version of the manuscript. The manuscript will undergo copyediting, typesetting, and review of the resulting proof before it is published in its final form. Please note that during the production process errors may be discovered which could affect the content, and all legal disclaimers that apply to the journal pertain. Comparative evolutionary and phylogenomic analysis of Avian avulaviruses 1 to 20 Aziz-ul-Rahman1,3, Muhammad Munir2, Muhammad Zubair Shabbir3# 1Department of Microbiology University of Veterinary and Animal Sciences, Lahore 54600, Pakistan https://orcid.org/0000-0002-3342-4462 2Division of Biomedical and Life Sciences, Furness College, Lancaster University, Lancaster LA1 4YG United Kingdomhttps://orcid.org/0000-0003-4038-0370 3 Quality Operations Laboratory University of Veterinary and Animal Sciences 54600 Lahore, Pakistan https://orcid.org/0000-0002-3562-007X # Corresponding author: Muhammad Zubair Shabbir E. -
2020 Taxonomic Update for Phylum Negarnaviricota (Riboviria: Orthornavirae), Including the Large Orders Bunyavirales and Mononegavirales
Archives of Virology https://doi.org/10.1007/s00705-020-04731-2 VIROLOGY DIVISION NEWS 2020 taxonomic update for phylum Negarnaviricota (Riboviria: Orthornavirae), including the large orders Bunyavirales and Mononegavirales Jens H. Kuhn1 · Scott Adkins2 · Daniela Alioto3 · Sergey V. Alkhovsky4 · Gaya K. Amarasinghe5 · Simon J. Anthony6,7 · Tatjana Avšič‑Županc8 · María A. Ayllón9,10 · Justin Bahl11 · Anne Balkema‑Buschmann12 · Matthew J. Ballinger13 · Tomáš Bartonička14 · Christopher Basler15 · Sina Bavari16 · Martin Beer17 · Dennis A. Bente18 · Éric Bergeron19 · Brian H. Bird20 · Carol Blair21 · Kim R. Blasdell22 · Steven B. Bradfute23 · Rachel Breyta24 · Thomas Briese25 · Paul A. Brown26 · Ursula J. Buchholz27 · Michael J. Buchmeier28 · Alexander Bukreyev18,29 · Felicity Burt30 · Nihal Buzkan31 · Charles H. Calisher32 · Mengji Cao33,34 · Inmaculada Casas35 · John Chamberlain36 · Kartik Chandran37 · Rémi N. Charrel38 · Biao Chen39 · Michela Chiumenti40 · Il‑Ryong Choi41 · J. Christopher S. Clegg42 · Ian Crozier43 · John V. da Graça44 · Elena Dal Bó45 · Alberto M. R. Dávila46 · Juan Carlos de la Torre47 · Xavier de Lamballerie38 · Rik L. de Swart48 · Patrick L. Di Bello49 · Nicholas Di Paola50 · Francesco Di Serio40 · Ralf G. Dietzgen51 · Michele Digiaro52 · Valerian V. Dolja53 · Olga Dolnik54 · Michael A. Drebot55 · Jan Felix Drexler56 · Ralf Dürrwald57 · Lucie Dufkova58 · William G. Dundon59 · W. Paul Duprex60 · John M. Dye50 · Andrew J. Easton61 · Hideki Ebihara62 · Toufc Elbeaino63 · Koray Ergünay64 · Jorlan Fernandes195 · Anthony R. Fooks65 · Pierre B. H. Formenty66 · Leonie F. Forth17 · Ron A. M. Fouchier48 · Juliana Freitas‑Astúa67 · Selma Gago‑Zachert68,69 · George Fú Gāo70 · María Laura García71 · Adolfo García‑Sastre72 · Aura R. Garrison50 · Aiah Gbakima73 · Tracey Goldstein74 · Jean‑Paul J. Gonzalez75,76 · Anthony Grifths77 · Martin H. Groschup12 · Stephan Günther78 · Alexandro Guterres195 · Roy A. -
Differential Features of Fusion Activation Within the Paramyxoviridae
viruses Review Differential Features of Fusion Activation within the Paramyxoviridae Kristopher D. Azarm and Benhur Lee * Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA; [email protected] * Correspondence: [email protected]; Tel.: +1-212-241-2552 Received: 17 December 2019; Accepted: 29 January 2020; Published: 30 January 2020 Abstract: Paramyxovirus (PMV) entry requires the coordinated action of two envelope glycoproteins, the receptor binding protein (RBP) and fusion protein (F). The sequence of events that occurs during the PMV entry process is tightly regulated. This regulation ensures entry will only initiate when the virion is in the vicinity of a target cell membrane. Here, we review recent structural and mechanistic studies to delineate the entry features that are shared and distinct amongst the Paramyxoviridae. In general, we observe overarching distinctions between the protein-using RBPs and the sialic acid- (SA-) using RBPs, including how their stalk domains differentially trigger F. Moreover, through sequence comparisons, we identify greater structural and functional conservation amongst the PMV fusion proteins, as compared to the RBPs. When examining the relative contributions to sequence conservation of the globular head versus stalk domains of the RBP, we observe that, for the protein-using PMVs, the stalk domains exhibit higher conservation and find the opposite trend is true for SA-using PMVs. A better understanding of conserved and distinct features that govern the entry of protein-using versus SA-using PMVs will inform the rational design of broader spectrum therapeutics that impede this process. Keywords: paramyxovirus; viral envelope proteins; type I fusion protein; henipavirus; virus entry; viral transmission; structure; rubulavirus; parainfluenza virus 1. -
Murdoch Research Repository
MURDOCH RESEARCH REPOSITORY This is the author’s final version of the work, as accepted for publication following peer review but without the publisher’s layout or pagination. The definitive version is available at http://dx.doi.org/10.1016/j.meegid.2012.04.022 Hyndman, T., Marschang, R.E., Wellehan, J.F.X. and Nicholls, P.K. (2012) Isolation and molecular identification of Sunshine virus, a novel paramyxovirus found in Australian snakes. Infection, Genetics and Evolution, 12 (7). pp. 1436-1446. http://researchrepository.murdoch.edu.au/10552/ Copyright: © 2012 Elsevier B.V. It is posted here for your personal use. No further distribution is permitted. Accepted Manuscript Isolation and molecular identification of sunshine virus, a novel paramyxovirus found in australian snakes Timothy H. Hyndman, Rachel E. Marschang, James F.X. Wellehan, Philip K. Nicholls PII: S1567-1348(12)00168-2 DOI: http://dx.doi.org/10.1016/j.meegid.2012.04.022 Reference: MEEGID 1292 To appear in: Infection, Genetics and Evolution Please cite this article as: Hyndman, T.H., Marschang, R.E., Wellehan, J.F.X., Nicholls, P.K., Isolation and molecular identification of sunshine virus, a novel paramyxovirus found in australian snakes, Infection, Genetics and Evolution (2012), doi: http://dx.doi.org/10.1016/j.meegid.2012.04.022 This is a PDF file of an unedited manuscript that has been accepted for publication. As a service to our customers we are providing this early version of the manuscript. The manuscript will undergo copyediting, typesetting, and review of the resulting proof before it is published in its final form. -
Electronic Case Report Form (Ecrf)
BMJ Publishing Group Limited (BMJ) disclaims all liability and responsibility arising from any reliance Supplemental material placed on this supplemental material which has been supplied by the author(s) BMJ Open Supplementary Material 3 Electronic case report form (eCRF) Study: Validation and optimization of the utility of routine data for improving the quality of sepsis management in hospitals (Validierung und Optimierung der Nutzbarkeit von Routinedaten zur Qualitätsverbesserung des Sepsis-Managements im Krankenhaus) Study acronym: OPTIMISE Case-ID: |_________________________________| Explanations: - italic text: Gives explanation, is not presented in the eCRF - blue text: multiple answers possible - italic red text: condition for presentation of item or query rule 1 Schwarzkopf D, et al. BMJ Open 2020; 10:e035763. doi: 10.1136/bmjopen-2019-035763 BMJ Publishing Group Limited (BMJ) disclaims all liability and responsibility arising from any reliance Supplemental material placed on this supplemental material which has been supplied by the author(s) BMJ Open Supplementary Material 3 A. Identification of patients with sepsis 1000 random cases per study centre need to be documented by trained study physicians 0. Admission and discharge dates a. Where several stays 0 no merged to one case for billing 1 yes reasons? If a = yes, ____ how many stays/cases have Query rule: N >= 2 been merged? b. Admission and discharge Admission date: |__|__|____ Discharge date: |__|__|____ dates Admission date: |__|__|____ Discharge date: |__|__|____ Admission date: |__|__|____ Discharge date: |__|__|____ Admission date: |__|__|____ Discharge date: |__|__|____ Query rule: discharge date after admission date c. -
Oncolytic Viruses for Canine Cancer Treatment
cancers Review Oncolytic Viruses for Canine Cancer Treatment Diana Sánchez 1, Gabriela Cesarman-Maus 2 , Alfredo Amador-Molina 1 and Marcela Lizano 1,* 1 Unidad de Investigación Biomédica en Cáncer, Instituto Nacional de Cancerología-Instituto de Investigaciones Biomédicas, Universidad Nacional Autónoma de México, Mexico City 14080, Mexico; [email protected] (D.S.); [email protected] (A.A.-M.) 2 Department of Hematology, Instituto Nacional de Cancerología, Mexico City 14080, Mexico; [email protected] * Correspondence: [email protected]; Tel.: +51-5628-0400 (ext. 31035) Received: 19 September 2018; Accepted: 23 October 2018; Published: 27 October 2018 Abstract: Oncolytic virotherapy has been investigated for several decades and is emerging as a plausible biological therapy with several ongoing clinical trials and two viruses are now approved for cancer treatment in humans. The direct cytotoxicity and immune-stimulatory effects make oncolytic viruses an interesting strategy for cancer treatment. In this review, we summarize the results of in vitro and in vivo published studies of oncolytic viruses in different phases of evaluation in dogs, using PubMed and Google scholar as search platforms, without time restrictions (to date). Natural and genetically modified oncolytic viruses were evaluated with some encouraging results. The most studied viruses to date are the reovirus, myxoma virus, and vaccinia, tested mostly in solid tumors such as osteosarcomas, mammary gland tumors, soft tissue sarcomas, and mastocytomas. Although the results are promising, there are issues that need addressing such as ensuring tumor specificity, developing optimal dosing, circumventing preexisting antibodies from previous exposure or the development of antibodies during treatment, and assuring a reasonable safety profile, all of which are required in order to make this approach a successful therapy in dogs. -
Complete Sections As Applicable
This form should be used for all taxonomic proposals. Please complete all those modules that are applicable (and then delete the unwanted sections). For guidance, see the notes written in blue and the separate document “Help with completing a taxonomic proposal” Please try to keep related proposals within a single document; you can copy the modules to create more than one genus within a new family, for example. MODULE 1: TITLE, AUTHORS, etc (to be completed by ICTV Code assigned: 2015.006aM officers) Short title: Implementation of taxon-wide non-Latinized binomial species names in the family Rhabdoviridae (e.g. 6 new species in the genus Zetavirus) Modules attached 1 2 3 4 5 (modules 1 and 10 are required) 6 7 8 9 10 Author(s): ICTV Rhabdoviridae Study Group: Walker, Peter Chair Australia [email protected] Blasdell, Kim Member Australia [email protected] Calisher, Charlie H. Member USA [email protected] Dietzgen, Ralf G. Member Australia [email protected] Kondo, Hideki Member Japan [email protected] Kurath, Gael Member USA [email protected] Longdon, Ben Member UK [email protected] Stone, David Member UK [email protected] Tesh, Robert B. Member USA [email protected] Tordo, Noël Member France [email protected] Vasilakis, Nikos Member USA [email protected] Whitfield, Anna Member USA [email protected] and Kuhn, Jens H., [email protected] Corresponding author with e-mail address: Walker, Peter (ICTV Rhabdoviridae Study Group Chair), [email protected] List the ICTV study group(s) that have seen this proposal: A list of study groups and contacts is provided at http://www.ictvonline.org/subcommittees.asp . -
Meta-Transcriptomic Analysis of Virus Diversity in Urban Wild Birds
bioRxiv preprint doi: https://doi.org/10.1101/2020.03.07.982207; this version posted March 8, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Meta-transcriptomic analysis of virus diversity in urban wild birds 2 with paretic disease 3 4 Wei-Shan Chang1†, John-Sebastian Eden1,2†, Jane Hall3, Mang Shi1, Karrie Rose3,4, Edward C. 5 Holmes1# 6 7 8 1Marie Bashir Institute for Infectious Diseases and Biosecurity, School of Life and 9 Environmental Sciences and School of Medical Sciences, University of Sydney, Sydney, NSW, 10 Australia. 11 2Westmead Institute for Medical Research, Centre for Virus Research, Westmead, NSW, 12 Australia. 13 3Australian Registry of Wildlife Health, Taronga Conservation Society Australia, Mosman, 14 NSW, Australia. 15 4James Cook University, College of Public Health, Medical & Veterinary Sciences, Townsville, 16 QLD, Australia. 17 18 †Authors contributed equally 19 20 #Author for correspondence: 21 Professor Edward C. Holmes 22 Email: [email protected] 23 Phone: +61 2 9351 5591 1 bioRxiv preprint doi: https://doi.org/10.1101/2020.03.07.982207; this version posted March 8, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 24 25 Abstract: 248 words 26 Importance: 109 words 27 Text: 6296 words 28 Running title: Virome of urban wild birds with neurological signs. -
Cuestionario A1-T67
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Commission Directive (Eu)
L 279/54 EN Offi cial Jour nal of the European Union 31.10.2019 COMMISSION DIRECTIVE (EU) 2019/1833 of 24 October 2019 amending Annexes I, III, V and VI to Directive 2000/54/EC of the European Parliament and of the Council as regards purely technical adjustments THE EUROPEAN COMMISSION, Having regard to the Treaty on the Functioning of the European Union, Having regard to Directive 2000/54/EC of the European Parliament and of the Council of 18 September 2000 on the protection of workers from risks related to exposure to biological agents at work (1), and in particular Article 19 thereof, Whereas: (1) Principle 10 of the European Pillar of Social Rights (2), proclaimed at Gothenburg on 17 November 2017, provides that every worker has the right to a healthy, safe and well-adapted working environment. The workers’ right to a high level of protection of their health and safety at work and to a working environment that is adapted to their professional needs and that enables them to prolong their participation in the labour market includes protection from exposure to biological agents at work. (2) The implementation of the directives related to the health and safety of workers at work, including Directive 2000/54/EC, was the subject of an ex-post evaluation, referred to as a REFIT evaluation. The evaluation looked at the directives’ relevance, at research and at new scientific knowledge in the various fields concerned. The REFIT evaluation, referred to in the Commission Staff Working Document (3), concludes, among other things, that the classified list of biological agents in Annex III to Directive 2000/54/EC needs to be amended in light of scientific and technical progress and that consistency with other relevant directives should be enhanced. -
Taxonomy of the Order Mononegavirales: Update 2017
HHS Public Access Author manuscript Author ManuscriptAuthor Manuscript Author Arch Virol Manuscript Author . Author manuscript; Manuscript Author available in PMC 2018 August 01. Published in final edited form as: Arch Virol. 2017 August ; 162(8): 2493–2504. doi:10.1007/s00705-017-3311-7. *Corresponding author: JHK: Integrated Research Facility at Fort Detrick (IRF-Frederick), Division of Clinical Research (DCR), National Institute of Allergy and Infectious Diseases (NIAID), National Institutes of Health (NIH), B-8200 Research Plaza, Fort Detrick, Frederick, MD 21702, USA; Phone: +1-301-631-7245; Fax: +1-301-631-7389; [email protected]. $The members of the International Committee on Taxonomy of Viruses (ICTV) Bornaviridae Study Group #The members of the ICTV Filoviridae Study Group †The members of the ICTV Mononegavirales Study Group ‡The members of the ICTV Nyamiviridae Study Group ^The members of the ICTV Paramyxoviridae Study Group &The members of the ICTV Rhabdoviridae Study Group ORCIDs: Amarasinghe: orcid.org/0000-0002-0418-9707 Bào: orcid.org/0000-0002-9922-9723 Basler: orcid.org/0000-0003-4195-425X Bejerman: orcid.org/0000-0002-7851-3506 Blasdell: orcid.org/0000-0003-2121-0376 Bochnowski: orcid.org/0000-0002-3247-3991 Briese: orcid.org/0000-0002-4819-8963 Bukreyev: orcid.org/0000-0002-0342-4824 Chandran: orcid.org/0000-0003-0232-7077 Dietzgen: orcid.org/0000-0002-7772-2250 Dolnik: orcid.org/0000-0001-7739-4798 Dye: orcid.org/0000-0002-0883-5016 Easton: orcid.org/0000-0002-2288-3882 Formenty: orcid.org/0000-0002-9482-5411 Fouchier: