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Distributions of Extinction Times from Fossil Ages and Tree Topologies: the Example of Some Mid-Permian Synapsid Extinctions Gilles Didier, Michel Laurin
Distributions of extinction times from fossil ages and tree topologies: the example of some mid-Permian synapsid extinctions Gilles Didier, Michel Laurin To cite this version: Gilles Didier, Michel Laurin. Distributions of extinction times from fossil ages and tree topologies: the example of some mid-Permian synapsid extinctions. 2021. hal-03258099v2 HAL Id: hal-03258099 https://hal.archives-ouvertes.fr/hal-03258099v2 Preprint submitted on 20 Sep 2021 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Distributions of extinction times from fossil ages and tree topologies: the example of some mid-Permian synapsid extinctions Gilles Didier1 and Michel Laurin2 1 IMAG, Univ Montpellier, CNRS, Montpellier, France 2 CR2P (\Centre de Pal´eontologie { Paris"; UMR 7207), CNRS/MNHN/SU, Mus´eumNational d'Histoire Naturelle, Paris, France September 16, 2021 Abstract Given a phylogenetic tree that includes only extinct, or a mix of extinct and extant taxa, where at least some fossil data are available, we present a method to compute the distribution of the extinction time of a given set of taxa under the Fossilized-Birth-Death model. Our approach differs from the previous ones in that it takes into account (i) the possibility that the taxa or the clade considered may diversify before going extinct and (ii) the whole phylogenetic tree to estimate extinction times, whilst previous methods do not consider the diversification process and deal with each branch independently. -
A Comparative Study of the Primary Vascular System Of
Amer. J. Bot. 55(4): 464-472. 1!16'>. A COMPARATIVE STUDY OF THE PRIMARY VASCULAR SYSTE~1 OF CONIFERS. III. STELAR EVOLUTION IN GYMNOSPERMS 1 KADAMBARI K. NAMBOODIRI2 AND CHARLES B. BECK Department of Botany, University of Michigan, Ann Arbor ABST RAe T This paper includes a survey of the nature of the primary vascular system in a large number of extinct gymnosperms and progymnosperms. The vascular system of a majority of these plants resembles closely that of living conifers, being characterized, except in the most primitive forms which are protostelic, by a eustele consisting of axial sympodial bundles from which leaf traces diverge. The vascular supply to a leaf originates as a single trace with very few exceptions. It is proposed that the eustele in the gyrr.nosperms has evolved directly from the protostele by gradual medullation and concurrent separation of the peripheral conducting tissue into longitudinal sympodial bundles from which traces diverge radially. A subsequent modification results in divergence of traces in a tangential plane, The closed vascular system of conifers with opposite and whorled phyllotaxis, in which the vascular supply to a leaf originates as two traces which subsequently fuse, is considered to be derived from the open sympodial system characteristic of most gymnosperms. This hypothesis of stelar evolution is at variance with that of Jeffrey which suggests that the eustele of seed plants is derived by the lengthening and overlapping of leaf gaps in a siphonostele followed by further reduction in the resultant vascular bundles. This study suggests strongly that the "leaf gap" of conifers and other extant gymnosperms is not homologous with that of siphonostelic ferns and strengthens the validity of the view that Pterop sida is an unnatural group. -
Precise Age and Biostratigraphic Significance of the Kinney Brick Quarry Lagerstätte, Pennsylvanian of New Mexico, USA
Precise age and biostratigraphic significance of the Kinney Brick Quarry Lagerstätte, Pennsylvanian of New Mexico, USA Spencer G. Lucas1, Bruce D. Allen2, Karl Krainer3, James Barrick4, Daniel Vachard5, Joerg W. Schneider6, William A. DiMichele7 and Arden R. Bashforth8 1New Mexico Museum of Natural History, 1801 Mountain Road N.W., Albuquerque, New Mexico, 87104, USA email: [email protected] 2New Mexico Bureau of Geology and Mineral Resources, 801 Leroy Place, Socorro, New Mexico, 87801, USA email: [email protected] 3Institute of Geology and Paleontology, University of Innsbruck, Innsbruck, A-6020, Austria email: [email protected] 4Department of Geosciences, Texas Tech University, Box 41053, Lubbock, Texas, 79409, USA email: [email protected] 5Université des Sciences et Technologies de Lille, UFR des Sciences de la Terre, UPRESA 8014 du CNRS, Laboratoire LP3, Bâtiment SN 5, F-59655 Villeneuve d’Ascq, Cédex, France email: [email protected] 6TU Bergakademie Freiberg, Cottastasse 2, D-09596 Freiberg, Germany email:[email protected] 7Department of Paleobiology, NMNH Smithsonian Institution, Washington, DC 20560 email: [email protected] 8Geological Museum, Natural History Museum of Denmark, University of Copenhagen, Øster Voldgade 5-7, 1350 Copenhagen K, Denmark email: [email protected] ABSTRACT: The Kinney Brick Quarry is a world famous Late Pennsylvanian fossil Lagerstätte in central New Mexico, USA. The age assigned to the Kinney Brick Quarry (early-middle Virgilian) has long been based more on its inferred lithostratigraphic position than on biostratigraphic indicators at the quarry. We have developed three datasets —-stratigraphic position, fusulinids and conodonts— that in- dicate the Kinney Brick Quarry is older, of middle Missourian (Kasimovian) age. -
International Organisation of Palaeobotany IOP NEWSLETTER
INTERNATIONAL UNION OF BIOLOGIC A L S C IENC ES S ECTION FOR P A L A EOBOTANY International Organisation of Palaeobotany IOP NEWSLETTER 110 August 2016 CONTENTS FROM THE SECRETARY/TREASURER IPC XIV/IOPC X 2016 IOPC 2020 IOP MEMBERSHIP IOP EXECUTIVE COMMITTEE ELECTIONS IOP WEBMASTER POSITION WHAT HAPPENED TO THE OUPH COLLECTIONS? THE PALAEOBOTANY OF ITALY UPCOMING MEETINGS CALL FOR NEWS and NOTES The views expressed in the newsletter are those of its correspondents, and do not necessarily reflect the policy of IOP. Please send us your contributions for the next edition of our newsletter (June 2016) by M ay 30th, 2016. President: Johanna Eder-Kovar (G ermany) Vice Presidents: Bob Spicer (Great Britain), Harufumi Nishida (Japan), M ihai Popa (Romania) M embers at Large: Jun W ang (China), Hans Kerp (Germany), Alexej Herman (Russia) Secretary/Treasurer/Newsletter editor: M ike Dunn (USA) Conference/Congress Chair: Francisco de Assis Ribeiro dos Santos IOP Logo: The evolution of plant architecture (© by A. R. Hemsley) I OP 110 2 August 2016 FROM THE In addition, please send any issues that you think need to be addressed at the Business SECRETARY/TREASURER meeting. I will add those to the Agenda. Dear IOP Members, Respectfully, Mike I am happy to report, that IOP seems to be on track and ready for a new Executive Council to take over. The elections are IPC XIV/IOPC X 2016 progressing nicely and I will report the results in the September/October Newsletter. The one area that is still problematic is the webmaster position. We really to talk amongst ourselves, and find someone who is willing and able to do the job. -
Prepared in Cooperation with the Lllinois State Museum, Springfield
Prepared in cooperation with the lllinois State Museum, Springfield Richard 1. Leary' and Hermann W. Pfefferkorn2 ABSTRACT The Spencer Farm Flora is a compression-impression flora of early Pennsylvanian age (Namurian B, or possibly Namurian C) from Brown County, west-central Illinois. The plant fossils occur in argillaceous siltstones and sand- stones of the Caseyville Formation that were deposited in a ravine eroded in Mississippian carbonate rocks. The plant-bearing beds are the oldest deposits of Pennsylva- nian age yet discovered in Illinois. They were formed be- fore extensive Pennsylvanian coal swamps developed. The flora consists of 29 species and a few prob- lematical forms. It represents an unusual biofacies, in which the generally rare genera Megalopteris, Lesleya, Palaeopteridium, and Lacoea are quite common. Noegger- athiales, which are seldom present in roof-shale floras, make up over 20 percent of the specimens. The Spencer Farm Flora is an extrabasinal (= "upland1') flora that was grow- ing on the calcareous soils in the vicinity of the ravine in which they were deposited. It is suggested here that the Noeggerathiales may belong to the Progymnosperms and that Noeggerathialian cones might be derived from Archaeopteris-like fructifica- tions. The cone genus Lacoea is intermediate between Noeggerathiostrobus and Discini tes in its morphology. Two new species, Lesleya cheimarosa and Rhodeop- teridi urn phillipsii , are described, and Gulpenia limbur- gensis is reported from North America for the first time. INTRODUCTION The Spencer Farm Flora (table 1) differs from other Pennsylvanian floras of the Illinois Basin. Many genera and species in the Spencer Farm Flora either have not been found elsewhere in the basin or are very l~uratorof Geology, Illinois State Museum, Springfield. -
A Mysterious Giant Ichthyosaur from the Lowermost Jurassic of Wales
A mysterious giant ichthyosaur from the lowermost Jurassic of Wales JEREMY E. MARTIN, PEGGY VINCENT, GUILLAUME SUAN, TOM SHARPE, PETER HODGES, MATT WILLIAMS, CINDY HOWELLS, and VALENTIN FISCHER Ichthyosaurs rapidly diversified and colonised a wide range vians may challenge our understanding of their evolutionary of ecological niches during the Early and Middle Triassic history. period, but experienced a major decline in diversity near the Here we describe a radius of exceptional size, collected at end of the Triassic. Timing and causes of this demise and the Penarth on the coast of south Wales near Cardiff, UK. This subsequent rapid radiation of the diverse, but less disparate, specimen is comparable in morphology and size to the radius parvipelvian ichthyosaurs are still unknown, notably be- of shastasaurids, and it is likely that it comes from a strati- cause of inadequate sampling in strata of latest Triassic age. graphic horizon considerably younger than the last definite Here, we describe an exceptionally large radius from Lower occurrence of this family, the middle Norian (Motani 2005), Jurassic deposits at Penarth near Cardiff, south Wales (UK) although remains attributable to shastasaurid-like forms from the morphology of which places it within the giant Triassic the Rhaetian of France were mentioned by Bardet et al. (1999) shastasaurids. A tentative total body size estimate, based on and very recently by Fischer et al. (2014). a regression analysis of various complete ichthyosaur skele- Institutional abbreviations.—BRLSI, Bath Royal Literary tons, yields a value of 12–15 m. The specimen is substantially and Scientific Institution, Bath, UK; NHM, Natural History younger than any previously reported last known occur- Museum, London, UK; NMW, National Museum of Wales, rences of shastasaurids and implies a Lazarus range in the Cardiff, UK; SMNS, Staatliches Museum für Naturkunde, lowermost Jurassic for this ichthyosaur morphotype. -
Phytoplankton As Key Mediators of the Biological Carbon Pump: Their Responses to a Changing Climate
sustainability Review Phytoplankton as Key Mediators of the Biological Carbon Pump: Their Responses to a Changing Climate Samarpita Basu * ID and Katherine R. M. Mackey Earth System Science, University of California Irvine, Irvine, CA 92697, USA; [email protected] * Correspondence: [email protected] Received: 7 January 2018; Accepted: 12 March 2018; Published: 19 March 2018 Abstract: The world’s oceans are a major sink for atmospheric carbon dioxide (CO2). The biological carbon pump plays a vital role in the net transfer of CO2 from the atmosphere to the oceans and then to the sediments, subsequently maintaining atmospheric CO2 at significantly lower levels than would be the case if it did not exist. The efficiency of the biological pump is a function of phytoplankton physiology and community structure, which are in turn governed by the physical and chemical conditions of the ocean. However, only a few studies have focused on the importance of phytoplankton community structure to the biological pump. Because global change is expected to influence carbon and nutrient availability, temperature and light (via stratification), an improved understanding of how phytoplankton community size structure will respond in the future is required to gain insight into the biological pump and the ability of the ocean to act as a long-term sink for atmospheric CO2. This review article aims to explore the potential impacts of predicted changes in global temperature and the carbonate system on phytoplankton cell size, species and elemental composition, so as to shed light on the ability of the biological pump to sequester carbon in the future ocean. -
A Critique of Phanerozoic Climatic Models Involving Changes in The
Earth-Science Reviews 56Ž. 2001 1–159 www.elsevier.comrlocaterearscirev A critique of Phanerozoic climatic models involving changes in the CO2 content of the atmosphere A.J. Boucot a,), Jane Gray b,1 a Department of Zoology, Oregon State UniÕersity, CorÕallis, OR 97331, USA b Department of Biology, UniÕersity of Oregon, Eugene, OR 97403, USA Received 28 April 1998; accepted 19 April 2001 Abstract Critical consideration of varied Phanerozoic climatic models, and comparison of them against Phanerozoic global climatic gradients revealed by a compilation of Cambrian through Miocene climatically sensitive sedimentsŽ evaporites, coals, tillites, lateritic soils, bauxites, calcretes, etc.. suggests that the previously postulated climatic models do not satisfactorily account for the geological information. Nor do many climatic conclusions based on botanical data stand up very well when examined critically. Although this account does not deal directly with global biogeographic information, another powerful source of climatic information, we have tried to incorporate such data into our thinking wherever possible, particularly in the earlier Paleozoic. In view of the excellent correlation between CO2 present in Antarctic ice cores, going back some hundreds of thousands of years, and global climatic gradient, one wonders whether or not the commonly postulated Phanerozoic connection between atmospheric CO2 and global climatic gradient is more coincidence than cause and effect. Many models have been proposed that attempt to determine atmospheric composition and global temperature through geological time, particularly for the Phanerozoic or significant portions of it. Many models assume a positive correlation between atmospheric CO2 and surface temperature, thus viewing changes in atmospheric CO2 as playing the critical role in r regulating climate temperature, but none agree on the levels of atmospheric CO2 through time. -
Large Sulfur-Isotope Anomaly in Nonvolcanic Sulfate Aerosol and Its Implications for the Archean Atmosphere
Large sulfur-isotope anomaly in nonvolcanic sulfate aerosol and its implications for the Archean atmosphere Robina Shaheena, Mariana M. Abaunzaa, Teresa L. Jacksona, Justin McCabea,b, Joël Savarinoc,d, and Mark H. Thiemensa,1 aDepartment of Chemistry and Biochemistry, University of California, San Diego, La Jolla, CA 92093; bPacific Ridge School, Carlsbad, CA 92009; cLaboratoire de Glaciologie et de Géophysique de l’Environnement, Centre National de la Recherche Scientifique, Unité Mixte de Recherche 5183, F-38041 Grenoble, France; and dLaboratoire de Glaciologie et de Géophysique de l’Environnement, Université Grenoble Alpes, Unité Mixte de Recherche 5183, F-38041 Grenoble, France † Edited by Barbara J. Finlayson-Pitts, University of California, Irvine, CA, and approved July 18, 2014 (received for review April 8, 2014) Sulfur-isotopic anomalies have been used to trace the evolution of (1980–2002) have recently revealed how ENSO-driven changes oxygen in the Precambrian atmosphere and to document past affect the global transport and transformation of sulfate aero- volcanic eruptions. High-precision sulfur quadruple isotope sols from the troposphere to the stratosphere and across hemi- measurements of sulfate aerosols extracted from a snow pit at spheres (10). the South Pole (1984–2001) showed the highest S-isotopic anoma- lies (Δ33S =+1.66‰ and Δ36S =+2‰) in a nonvolcanic (1998–1999) Results and Discussion period, similar in magnitude to Pinatubo and Agung, the largest 2- The highest SO4 concentration in snow [154 parts per billion volcanic eruptions of the 20th century. The highest isotopic anom- (ppb)] is observed after volcanic activity (Pinatubo, June 1991; aly may be produced from a combination of different stratospheric Cerro Hudson, August 1991). -
Silicate Weathering in Anoxic Marine Sediment As a Requirement for Authigenic Carbonate Burial T
Earth-Science Reviews 200 (2020) 102960 Contents lists available at ScienceDirect Earth-Science Reviews journal homepage: www.elsevier.com/locate/earscirev Silicate weathering in anoxic marine sediment as a requirement for authigenic carbonate burial T Marta E. Torresa,*, Wei-Li Hongb, Evan A. Solomonc, Kitty Millikend, Ji-Hoon Kime, James C. Samplef, Barbara M.A. Teichertg, Klaus Wallmannh a College of Earth, Ocean and Atmospheric Science, Oregon State University, Corvallis OR 97331, USA b Geological Survey of Norway, Trondheim, Norway c School of Oceanography, University of Washington, Seattle, WA 98195, USA d Bureau of Economic Geology, University of Texas at Austin, Austin, TX 78713, USA e Petroleum and Marine Research Division, Korea Institute of Geoscience and Mineral Resources, Daejeon, South Korea f School of Earth and Sustainability, Northern Arizona University, Flagstaff, AZ 86011, USA g Geologisch-Paläontologisches Institut, Wilhelms-Universität Münster, Corrensstr. 24, 48149 Münster, Germany h IFM-GEOMAR Leibniz Institute of Marine Sciences, Wischhofstrasse 1-3, 24148 Kiel, Germany ARTICLE INFO ABSTRACT Keywords: We emphasize the importance of marine silicate weathering (MSiW) reactions in anoxic sediment as funda- Silicate weathering mental in generating alkalinity and cations needed for carbonate precipitation and preservation along con- Authigenic carbonate tinental margins. We use a model that couples thermodynamics with aqueous geochemistry to show that the CO2 Organogenic dolomite released during methanogenesis results in a drop in pH to 6.0; unless these protons are buffered by MSiW, Alkalinity carbonate minerals will dissolve. We present data from two regions: the India passive margin and the active Carbon cycling subduction zone off Japan, where ash and/or rivers supply the reactive silicate phase, as reflected in strontium isotope data. -
Ocean Drilling Program Scientific Results Volume
von Rad, U., Haq, B. U., et al., 1992 Proceedings of the Ocean Drilling Program, Scientific Results, Vol. 122 24. TRIASSIC FORAMINIFERS FROM SITES 761 AND 764, WOMBAT PLATEAU, NORTHWEST AUSTRALIA1 Louisette Zaninetti,2 Rossana Martini,2 and Thierry Dumont3 ABSTRACT The Late Triassic foraminifers encountered in the cores from ODP Leg 122 Sites 761 and 764 are, on the basis of Triasina oberhauseri and Triasina hantkeni, late Norian and Rhaetian (Jriasina hantkeni Biozone) in age. The reefal carbonate platform penetrated at both sites is characterized by inner shelf (intertidal to lagoon), patch reef, and outer shelf facies. INTRODUCTION major break between the two. This is in turn overlain at Site 761 by a sharp sedimentary break followed by a new shallow- Upper Triassic sediments were drilled offshore northwest ing-upward sedimentary sequence of Rhaetian age, which is Australia in 1988 during Ocean Drilling Program (ODP) Leg capped by the postrift unconformity and comprises schemat- 122 (Haq, von Rad, et al., 1990). Four sites (759, 760, 761, and ically two units: (1) a lower, terrigenous-rich, transgressive 764) were drilled on the Wombat Plateau, the northern prom- unit showing both shallow open-marine and external platform ontory of the Exmouth Plateau (von Rad et al., 1989a; Fig. environments and (2) an upper regressive carbonate unit with 1 A). These sites provided the opportunity for reconstructing a lagoonal to intertidal deposits. A third overlying unit recov- composite section of Upper Triassic cores from the Carnian to ered at Site 764 does not exist at Site 761 because of Jurassic the Rhaetian, because the Wombat Plateau experienced non- erosion. -
(Voltziales) from the Triassic of Antarctica
Int. J. Plant Sci. 174(3):425–444. 2013. Ó 2013 by The University of Chicago. All rights reserved. 1058-5893/2013/17403-0014$15.00 DOI: 10.1086/668686 WHOLE-PLANT CONCEPT AND ENVIRONMENT RECONSTRUCTION OF A TELEMACHUS CONIFER (VOLTZIALES) FROM THE TRIASSIC OF ANTARCTICA Benjamin Bomfleur,1,* Anne-Laure Decombeix,y Ignacio H. Escapa,z Andrew B. Schwendemann,* and Brian Axsmith§ *Department of Ecology and Evolutionary Biology, University of Kansas, Lawrence, Kansas 66045, U.S.A., and Natural History Museum and Biodiversity Institute, University of Kansas, Lawrence, Kansas 66045, U.S.A.; yUniversite´ Montpellier 2, Unite´ Mixte de Recherche Botanique et Bioinformatique de l’Architecture des Plantes (UMR AMAP), Montpellier, F-34000, France, and Centre National de la Recherche Scientifique, UMR AMAP, Montpellier, F-34000, France; zConsejo Nacional de Investigaciones Cientı´ficas y Te´cnicas—Museo Paleontologico Egidio Feruglio, Trelew, Chubut 9100, Argentina; and §Department of Biological Sciences, LSCB 124, University of South Alabama, Mobile, Alabama 36688, U.S.A. We present a whole-plant concept for a genus of voltzialean conifers on the basis of compression/impression and permineralized material from the Triassic of Antarctica. The reconstruction of the individual organs is based on a combination of organic connections, structural correspondences, similarities in cuticles and epidermal morphologies, co-occurrence data, and ex situ palynology. The affiliated genera of organs include trunks, branches, and roots (Notophytum); strap-shaped leaves with parallel venation (Heidiphyllum compressions and permineralized Notophytum leaves); seed cones (Telemachus and Parasciadopitys); pollen cones (Switzianthus); and bisaccate pollen of Alisporites type. Structural similarities lead us to suggest that Parasciadopitys is the permineralized state of a Telemachus cone and should be treated as a junior synonym.