An Updated Reef Fish Checklist of the Southernmost Caribbean Reef
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Article Evolutionary Dynamics of the OR Gene Repertoire in Teleost Fishes
bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Article Evolutionary dynamics of the OR gene repertoire in teleost fishes: evidence of an association with changes in olfactory epithelium shape Maxime Policarpo1, Katherine E Bemis2, James C Tyler3, Cushla J Metcalfe4, Patrick Laurenti5, Jean-Christophe Sandoz1, Sylvie Rétaux6 and Didier Casane*,1,7 1 Université Paris-Saclay, CNRS, IRD, UMR Évolution, Génomes, Comportement et Écologie, 91198, Gif-sur-Yvette, France. 2 NOAA National Systematics Laboratory, National Museum of Natural History, Smithsonian Institution, Washington, D.C. 20560, U.S.A. 3Department of Paleobiology, National Museum of Natural History, Smithsonian Institution, Washington, D.C., 20560, U.S.A. 4 Independent Researcher, PO Box 21, Nambour QLD 4560, Australia. 5 Université de Paris, Laboratoire Interdisciplinaire des Energies de Demain, Paris, France 6 Université Paris-Saclay, CNRS, Institut des Neurosciences Paris-Saclay, 91190, Gif-sur- Yvette, France. 7 Université de Paris, UFR Sciences du Vivant, F-75013 Paris, France. * Corresponding author: e-mail: [email protected]. !1 bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Abstract Teleost fishes perceive their environment through a range of sensory modalities, among which olfaction often plays an important role. -
CAT Vertebradosgt CDC CECON USAC 2019
Catálogo de Autoridades Taxonómicas de vertebrados de Guatemala CDC-CECON-USAC 2019 Centro de Datos para la Conservación (CDC) Centro de Estudios Conservacionistas (Cecon) Facultad de Ciencias Químicas y Farmacia Universidad de San Carlos de Guatemala Este documento fue elaborado por el Centro de Datos para la Conservación (CDC) del Centro de Estudios Conservacionistas (Cecon) de la Facultad de Ciencias Químicas y Farmacia de la Universidad de San Carlos de Guatemala. Guatemala, 2019 Textos y edición: Manolo J. García. Zoólogo CDC Primera edición, 2019 Centro de Estudios Conservacionistas (Cecon) de la Facultad de Ciencias Químicas y Farmacia de la Universidad de San Carlos de Guatemala ISBN: 978-9929-570-19-1 Cita sugerida: Centro de Estudios Conservacionistas [Cecon]. (2019). Catálogo de autoridades taxonómicas de vertebrados de Guatemala (Documento técnico). Guatemala: Centro de Datos para la Conservación [CDC], Centro de Estudios Conservacionistas [Cecon], Facultad de Ciencias Químicas y Farmacia, Universidad de San Carlos de Guatemala [Usac]. Índice 1. Presentación ............................................................................................ 4 2. Directrices generales para uso del CAT .............................................. 5 2.1 El grupo objetivo ..................................................................... 5 2.2 Categorías taxonómicas ......................................................... 5 2.3 Nombre de autoridades .......................................................... 5 2.4 Estatus taxonómico -
Feeding Ecology of Invasive Lionfish (Pterois Volitans) in the Bahamian Archipelago
Environ Biol Fish (2009) 86:389–398 DOI 10.1007/s10641-009-9538-8 Feeding ecology of invasive lionfish (Pterois volitans) in the Bahamian archipelago James A. Morris Jr. & John L. Akins Received: 24 February 2009 /Accepted: 7 October 2009 /Published online: 27 October 2009 # US Government 2009 Abstract Feeding ecology of the lionfish (Pterois Keywords Pterois . Diet composition . volitans), an invasive species in the Western North Stomach content . Invasive species Atlantic, was examined by collecting stomach content data from fishes taken throughout the Bahamian archipelago. Three relative metrics of prey quantity, Introduction including percent number, percent frequency, and percent volume, were used to compare three indices The lionfishes, Pterois miles and P. volitans, (Hamner of dietary importance. Lionfish largely prey upon et al. 2007; Morris 2009) are the first non-native teleosts (78% volume) and crustaceans (14% volume). marine fishes to become established along the Twenty-one families and 41 species of teleosts were Atlantic coast of the U.S. and the Caribbean. Adult represented in the diet of lionfish; the top 10 families of lionfish specimens are now found along the U.S. East dietary importance were Gobiidae, Labridae, Gram- Coast from Cape Hatteras, North Carolina, to Florida, matidae, Apogonidae, Pomacentridae, Serranidae, and in Bermuda, the Bahamas, and throughout the Blenniidae, Atherinidae, Mullidae, and Monacanthi- Caribbean, including the Turks and Caicos, Haiti, dae. The proportional importance of crustaceans in the Cuba, Dominican Republic, Puerto Rico, St. Croix, diet was inversely related to size with the largest Belize, and Mexico (Schofield et al. 2009). The first lionfish preying almost exclusively on teleosts. -
Fish Assemblages Associated with Red Grouper Pits at Pulley Ridge, A
419 Abstract—Red grouper (Epineph- elus morio) modify their habitat by Fish assemblages associated with red grouper excavating sediment to expose rocky pits, providing structurally complex pits at Pulley Ridge, a mesophotic reef in the habitat for many fish species. Sur- Gulf of Mexico veys conducted with remotely op- erated vehicles from 2012 through 2015 were used to characterize fish Stacey L. Harter (contact author)1 assemblages associated with grouper Heather Moe1 pits at Pulley Ridge, a mesophotic 2 coral ecosystem and habitat area John K. Reed of particular concern in the Gulf Andrew W. David1 of Mexico, and to examine whether invasive species of lionfish (Pterois Email address for contact author: [email protected] spp.) have had an effect on these as- semblages. Overall, 208 grouper pits 1 Southeast Fisheries Science Center were examined, and 66 fish species National Marine Fisheries Service, NOAA were associated with them. Fish as- 3500 Delwood Beach Road semblages were compared by using Panama City, Florida 32408 several factors but were considered 2 Harbor Branch Oceanographic Institute to be significantly different only on Florida Atlantic University the basis of the presence or absence 5600 U.S. 1 North of predator species in their pit (no Fort Pierce, Florida 34946 predators, lionfish only, red grou- per only, or both lionfish and red grouper). The data do not indicate a negative effect from lionfish. Abun- dances of most species were higher in grouper pits that had lionfish, and species diversity was higher in grouper pits with a predator (lion- The red grouper (Epinephelus morio) waters (>70 m) of the shelf edge and fish, red grouper, or both). -
Assessing Species Diversity of Coral Triangle Artisanal Fisheries: a DNA Barcode Reference Library for the Shore Fishes Retailed at Ambon Harbor (Indonesia)
Received: 19 September 2019 | Revised: 30 January 2020 | Accepted: 3 February 2020 DOI: 10.1002/ece3.6128 ORIGINAL RESEARCH Assessing species diversity of Coral Triangle artisanal fisheries: A DNA barcode reference library for the shore fishes retailed at Ambon harbor (Indonesia) Gino Limmon1 | Erwan Delrieu-Trottin2,3 | Jesaya Patikawa1 | Frederik Rijoly1 | Hadi Dahruddin4 | Frédéric Busson2,5 | Dirk Steinke6 | Nicolas Hubert2 1Pusat Kemaritiman dan Kelautan, Universitas Pattimura (Maritime and Marine Abstract Science Center of Excellence), Ambon, The Coral Triangle (CT), a region spanning across Indonesia and Philippines, is home Indonesia to about 4,350 marine fish species and is among the world's most emblematic re- 2Institut de Recherche pour le Développement, UMR 226 ISEM (UM- gions in terms of conservation. Threatened by overfishing and oceans warming, the CNRS-IRD-EPHE), Montpellier, France CT fisheries have faced drastic declines over the last decades. Usually monitored 3Museum für Naturkunde, Leibniz-Institut für Evolutions-und Biodiversitätsforschung through a biomass-based approach, fisheries trends have rarely been characterized an der Humboldt-Universität zu Berlin, at the species level due to the high number of taxa involved and the difficulty to Berlin, Germany accurately and routinely identify individuals to the species level. Biomass, however, 4Division of Zoology, Research Center for Biology, Indonesian Institute of Sciences is a poor proxy of species richness, and automated methods of species identifica- (LIPI), Cibinong, Indonesia tion are required to move beyond biomass-based approaches. Recent meta-analyses 5UMR 7208 BOREA (MNHN-CNRS-UPMC- have demonstrated that species richness peaks at intermediary levels of biomass. IRD-UCBN), Muséum National d’Histoire Naturelle, Paris, France Consequently, preserving biomass is not equal to preserving biodiversity. -
Sharkcam Fishes
SharkCam Fishes A Guide to Nekton at Frying Pan Tower By Erin J. Burge, Christopher E. O’Brien, and jon-newbie 1 Table of Contents Identification Images Species Profiles Additional Info Index Trevor Mendelow, designer of SharkCam, on August 31, 2014, the day of the original SharkCam installation. SharkCam Fishes. A Guide to Nekton at Frying Pan Tower. 5th edition by Erin J. Burge, Christopher E. O’Brien, and jon-newbie is licensed under the Creative Commons Attribution-Noncommercial 4.0 International License. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc/4.0/. For questions related to this guide or its usage contact Erin Burge. The suggested citation for this guide is: Burge EJ, CE O’Brien and jon-newbie. 2020. SharkCam Fishes. A Guide to Nekton at Frying Pan Tower. 5th edition. Los Angeles: Explore.org Ocean Frontiers. 201 pp. Available online http://explore.org/live-cams/player/shark-cam. Guide version 5.0. 24 February 2020. 2 Table of Contents Identification Images Species Profiles Additional Info Index TABLE OF CONTENTS SILVERY FISHES (23) ........................... 47 African Pompano ......................................... 48 FOREWORD AND INTRODUCTION .............. 6 Crevalle Jack ................................................. 49 IDENTIFICATION IMAGES ...................... 10 Permit .......................................................... 50 Sharks and Rays ........................................ 10 Almaco Jack ................................................. 51 Illustrations of SharkCam -
Umberto Diego Rodrigues De Oliveira.Pdf
UNIVERSIDADE FEDERAL RURAL DE PERNAMBUCO DEPARTAMENTO DE BIOLOGIA PROGRAMA DE PÓS-GRADUAÇÃO EM ECOLOGIA Umberto Diego Rodrigues de Oliveira Modelagem de nicho ecológico e distribuição de dois corais endêmicos do Brasil RECIFE – PE, Julho de 2019 ii UMBERTO DIEGO RODRIGUES DE OLIVEIRA Modelagem de nicho ecológico e distribuição de dois corais endêmicos do Brasil Dissertação apresentada ao Programa de Pós-Graduação em Ecologia, da Universidade Federal Rural de Pernambuco (PPGE/UFRPE), como parte dos requisitos obrigatórios para obtenção do título de Mestre em Ecologia. Linha de pesquisa: Ecologia de ecossistemas marinhos Orientador: Dr. Carlos Daniel Pérez RECIFE – PE, Julho de 2019 iii Dados Internacionais de Catalogação na Publicação (CIP) Sistema Integrado de Bibliotecas da UFRPE Biblioteca Central, Recife-PE, Brasil O48m Oliveira, Umberto Diego Rodrigues de Modelagem de nicho ecológico e distribuição de dois corais endêmicos do Brasil / Umberto Diego Rodrigues de Oliveira. – 2019. 113 f. : il. Orientador: Carlos Daniel Pérez. Coorientadoras: Viviane Lúcia dos Santos Almeida de Melo. Dissertação (Mestrado) – Universidade Federal Rural de Pernambuco, Programa de Pós-Graduação em Ecologia, Recife, BR- PE, 2019. Inclui referências e apêndice(s). 1. Species Distribution Models 2. Maxent 3. AUC 4. Cnidária 5. Corais - Brasil I. Pérez, Carlos Daniel, orient. II. Título CDD 574.5 iv UMBERTO DIEGO RODRIGUES DE OLIVEIRA Modelagem de nicho ecológico e distribuição de dois corais endêmicos do Brasil Dissertação apresentada ao Programa de Pós-Graduação em Ecologia, da Universidade Federal Rural de Pernambuco (PPGE/UFRPE), como parte dos requisitos obrigatórios para obtenção do título de Mestre em Ecologia. BANCA EXAMINADORA _________________________________________________________________________ Prof. Dr. Carlos Daniel Pérez – UFPE Presidente da banca e orientador Profª. -
Taverampe2018.Pdf
Molecular Phylogenetics and Evolution 121 (2018) 212–223 Contents lists available at ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev Multilocus phylogeny, divergence times, and a major role for the benthic-to- T pelagic axis in the diversification of grunts (Haemulidae) ⁎ Jose Taveraa,b, , Arturo Acero P.c, Peter C. Wainwrightb a Departamento de Biología, Universidad del Valle, Cali, Colombia b Department of Evolution and Ecology, University of California, Davis, CA 95616, United States c Instituto de Estudios en Ciencias del Mar, CECIMAR, Universidad Nacional de Colombia sede Caribe, El Rodadero, Santa Marta, Colombia ARTICLE INFO ABSTRACT Keywords: We present a phylogenetic analysis with divergence time estimates, and an ecomorphological assessment of the Percomorpharia role of the benthic-to-pelagic axis of diversification in the history of haemulid fishes. Phylogenetic analyses were Fish performed on 97 grunt species based on sequence data collected from seven loci. Divergence time estimation Functional traits indicates that Haemulidae originated during the mid Eocene (54.7–42.3 Ma) but that the major lineages were Morphospace formed during the mid-Oligocene 30–25 Ma. We propose a new classification that reflects the phylogenetic Macroevolution history of grunts. Overall the pattern of morphological and functional diversification in grunts appears to be Zooplanktivore strongly linked with feeding ecology. Feeding traits and the first principal component of body shape strongly separate species that feed in benthic and pelagic habitats. The benthic-to-pelagic axis has been the major axis of ecomorphological diversification in this important group of tropical shoreline fishes, with about 13 transitions between feeding habitats that have had major consequences for head and body morphology. -
A List of Common and Scientific Names of Fishes from the United States And
t a AMERICAN FISHERIES SOCIETY QL 614 .A43 V.2 .A 4-3 AMERICAN FISHERIES SOCIETY Special Publication No. 2 A List of Common and Scientific Names of Fishes -^ ru from the United States m CD and Canada (SECOND EDITION) A/^Ssrf>* '-^\ —---^ Report of the Committee on Names of Fishes, Presented at the Ei^ty-ninth Annual Meeting, Clearwater, Florida, September 16-18, 1959 Reeve M. Bailey, Chairman Ernest A. Lachner, C. C. Lindsey, C. Richard Robins Phil M. Roedel, W. B. Scott, Loren P. Woods Ann Arbor, Michigan • 1960 Copies of this publication may be purchased for $1.00 each (paper cover) or $2.00 (cloth cover). Orders, accompanied by remittance payable to the American Fisheries Society, should be addressed to E. A. Seaman, Secretary-Treasurer, American Fisheries Society, Box 483, McLean, Virginia. Copyright 1960 American Fisheries Society Printed by Waverly Press, Inc. Baltimore, Maryland lutroduction This second list of the names of fishes of The shore fishes from Greenland, eastern the United States and Canada is not sim- Canada and the United States, and the ply a reprinting with corrections, but con- northern Gulf of Mexico to the mouth of stitutes a major revision and enlargement. the Rio Grande are included, but those The earlier list, published in 1948 as Special from Iceland, Bermuda, the Bahamas, Cuba Publication No. 1 of the American Fisheries and the other West Indian islands, and Society, has been widely used and has Mexico are excluded unless they occur also contributed substantially toward its goal of in the region covered. In the Pacific, the achieving uniformity and avoiding confusion area treated includes that part of the conti- in nomenclature. -
MRAG South Atlantic PSA Draft Report
South Atlantic Species Productivity – Susceptibility Analyses Draft Report To the Lenfest Ocean Program MRAG Americas 65 Eastern Avenue, Unit B2C Essex, MA 01929 Ph. 978-768-3880 Fax. 978-768-3878 www.mragamericas.com August 27, 2008 Table of Contents 1 Introduction........................................................................................................................................... 1 1.1 The Risk Based Assessment ........................................................................................................... 1 1.2 Information Collection ...................................................................................................................... 3 1.3 A Note about our Productivity Susceptibility Analysis Methodology................................................ 3 2 Non Snapper/Grouper Species ............................................................................................................ 3 2.1 Pink Shrimp, Penaeus [Farfantepenaeus] duorarum ....................................................................... 3 2.2 Red Drum, Sciaenops ocellatus ....................................................................................................... 4 3 Snapper/Grouper Complex .................................................................................................................. 5 3.1 Groupers .......................................................................................................................................... 5 3.2 Snapper......................................................................................................................................... -
Fish and Coral Species Lists Compiled by Coral Cay Conservation: Belize 1990-1998
FISH AND CORAL SPECIES LISTS COMPILED BY CORAL CAY CONSERVATION: BELIZE 1990-1998 - Edited by - Alastair Harborne, Marine Science Co-ordinator September 2000 CORAL CAY CONSERVATION LTD The Tower, 125 High St., Colliers Wood, London SW19 2JG TEL: +44 (0)20 8545 7721 FAX: +44 (0)870 750 0667 Email: [email protected] www: http://www.coralcay.org/ This report is part of a series of working documents detailing CCC’s science programme on Turneffe Atoll (1994-1998). The series is also available on CD-Rom. CCC fish and coral species lists 1. INTRODUCTION Between 1986 and 1998, Coral Cay Conservation (CCC) provided data and technical assistance to the Belize Department of Fisheries, Coastal Zone Management Unit and Coastal Zone Management Project under the remit of a Memorandum of Understanding. This work has provided data for seven proposed or established marine protected areas at South Water Cay, Bacalar Chico, Sapodilla Cays, Snake Cays, Laughing Bird Cay, Caye Caulker and Turneffe Atoll (Figure 1). These projects have generally provided habitat maps, the associated databases and management recommendations to assist reserve planning. In addition to the data collection, training, capacity building and environmental education undertaken by CCC, the expeditions have also provided opportunities for compiling presence / absence species lists of fish and corals in the different project areas. This document contains the fish list compiled by CCC staff and experienced volunteers and a reprint of Fenner (1999) detailing coral taxonomy in Belize and Cozumel, the Belize component of which was compiled while the author was working as a member of CCC’s field science staff. -
Hotspots, Extinction Risk and Conservation Priorities of Greater Caribbean and Gulf of Mexico Marine Bony Shorefishes
Old Dominion University ODU Digital Commons Biological Sciences Theses & Dissertations Biological Sciences Summer 2016 Hotspots, Extinction Risk and Conservation Priorities of Greater Caribbean and Gulf of Mexico Marine Bony Shorefishes Christi Linardich Old Dominion University, [email protected] Follow this and additional works at: https://digitalcommons.odu.edu/biology_etds Part of the Biodiversity Commons, Biology Commons, Environmental Health and Protection Commons, and the Marine Biology Commons Recommended Citation Linardich, Christi. "Hotspots, Extinction Risk and Conservation Priorities of Greater Caribbean and Gulf of Mexico Marine Bony Shorefishes" (2016). Master of Science (MS), Thesis, Biological Sciences, Old Dominion University, DOI: 10.25777/hydh-jp82 https://digitalcommons.odu.edu/biology_etds/13 This Thesis is brought to you for free and open access by the Biological Sciences at ODU Digital Commons. It has been accepted for inclusion in Biological Sciences Theses & Dissertations by an authorized administrator of ODU Digital Commons. For more information, please contact [email protected]. HOTSPOTS, EXTINCTION RISK AND CONSERVATION PRIORITIES OF GREATER CARIBBEAN AND GULF OF MEXICO MARINE BONY SHOREFISHES by Christi Linardich B.A. December 2006, Florida Gulf Coast University A Thesis Submitted to the Faculty of Old Dominion University in Partial Fulfillment of the Requirements for the Degree of MASTER OF SCIENCE BIOLOGY OLD DOMINION UNIVERSITY August 2016 Approved by: Kent E. Carpenter (Advisor) Beth Polidoro (Member) Holly Gaff (Member) ABSTRACT HOTSPOTS, EXTINCTION RISK AND CONSERVATION PRIORITIES OF GREATER CARIBBEAN AND GULF OF MEXICO MARINE BONY SHOREFISHES Christi Linardich Old Dominion University, 2016 Advisor: Dr. Kent E. Carpenter Understanding the status of species is important for allocation of resources to redress biodiversity loss.