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1 5 Chapter 1 Introduction I. LIFE CYCLES and DIVERSITY of VASCULAR PLANTS the Subjects of This Thesis Are the Pteri
Chapter 1-15 Chapter 1 Introduction I. LIFE CYCLES AND DIVERSITY OF VASCULAR PLANTS The subjects of this thesis are the pteridophytes and seed plants that are conventionally classified as the vascular plants or tracheophytes. Vascular plants were traditionally defined by the possession of specialized conducting tissues, called phloem and xylem. Mosses are now believed to have inherited their conducting tissues from a common ancestor with the tracheophytes (Mishler & Churchill 1984) but are not considered in this thesis. Vascular plants can be divided into four groups with respect to life cycle. These groups are homosporous pteridophytes, heterosporous pteridophytes, gymnosperms and angiosperms. This is not intended to be a phylogenetic classification. There are about a quarter of a million species of vascular plant alive today. The vast majority are angiosperms and most of the remainder are homosporous pteridophytes. Heterosporous pteridophytes and gymnosperms contribute only a small number of species (Table 1.1). TABLE 1.1 Estimated number of extant species in each of the major groups of vascular plants (data from Parker 1982). Homosporous pteridophytes 12,000 species Heterosporous pteridophytes <1,000 species Gymnosperms <1,000 species Angiosperms >200,000 species A. Homosporous pteridophytes Homosporous pteridophytes produce a single type of spore. Spores are dispersed and develop into photosynthetic or mycoparasitic gametophytes. A gametophyte's gender is indeterminate at the time of spore dispersal, and a single gametophyte may produce eggs and/or sperm. Sperm are motile, and require free water to fertilize eggs. The young sporophyte is nourished by the maternal gametophyte during early development but later becomes Chapter 1-16 nutritionally independent. -
The Influence of Probiotics on the Firmicutes/Bacteroidetes Ratio In
microorganisms Review The Influence of Probiotics on the Firmicutes/Bacteroidetes Ratio in the Treatment of Obesity and Inflammatory Bowel disease Spase Stojanov 1,2, Aleš Berlec 1,2 and Borut Štrukelj 1,2,* 1 Faculty of Pharmacy, University of Ljubljana, SI-1000 Ljubljana, Slovenia; [email protected] (S.S.); [email protected] (A.B.) 2 Department of Biotechnology, Jožef Stefan Institute, SI-1000 Ljubljana, Slovenia * Correspondence: borut.strukelj@ffa.uni-lj.si Received: 16 September 2020; Accepted: 31 October 2020; Published: 1 November 2020 Abstract: The two most important bacterial phyla in the gastrointestinal tract, Firmicutes and Bacteroidetes, have gained much attention in recent years. The Firmicutes/Bacteroidetes (F/B) ratio is widely accepted to have an important influence in maintaining normal intestinal homeostasis. Increased or decreased F/B ratio is regarded as dysbiosis, whereby the former is usually observed with obesity, and the latter with inflammatory bowel disease (IBD). Probiotics as live microorganisms can confer health benefits to the host when administered in adequate amounts. There is considerable evidence of their nutritional and immunosuppressive properties including reports that elucidate the association of probiotics with the F/B ratio, obesity, and IBD. Orally administered probiotics can contribute to the restoration of dysbiotic microbiota and to the prevention of obesity or IBD. However, as the effects of different probiotics on the F/B ratio differ, selecting the appropriate species or mixture is crucial. The most commonly tested probiotics for modifying the F/B ratio and treating obesity and IBD are from the genus Lactobacillus. In this paper, we review the effects of probiotics on the F/B ratio that lead to weight loss or immunosuppression. -
Reproduction in Plants Which But, She Has Never Seen the Seeds We Shall Learn in This Chapter
Reproduction in 12 Plants o produce its kind is a reproduction, new plants are obtained characteristic of all living from seeds. Torganisms. You have already learnt this in Class VI. The production of new individuals from their parents is known as reproduction. But, how do Paheli thought that new plants reproduce? There are different plants always grow from seeds. modes of reproduction in plants which But, she has never seen the seeds we shall learn in this chapter. of sugarcane, potato and rose. She wants to know how these plants 12.1 MODES OF REPRODUCTION reproduce. In Class VI you learnt about different parts of a flowering plant. Try to list the various parts of a plant and write the Asexual reproduction functions of each. Most plants have In asexual reproduction new plants are roots, stems and leaves. These are called obtained without production of seeds. the vegetative parts of a plant. After a certain period of growth, most plants Vegetative propagation bear flowers. You may have seen the It is a type of asexual reproduction in mango trees flowering in spring. It is which new plants are produced from these flowers that give rise to juicy roots, stems, leaves and buds. Since mango fruit we enjoy in summer. We eat reproduction is through the vegetative the fruits and usually discard the seeds. parts of the plant, it is known as Seeds germinate and form new plants. vegetative propagation. So, what is the function of flowers in plants? Flowers perform the function of Activity 12.1 reproduction in plants. Flowers are the Cut a branch of rose or champa with a reproductive parts. -
Heterospory: the Most Iterative Key Innovation in the Evolutionary History of the Plant Kingdom
Biol. Rej\ (1994). 69, l>p. 345-417 345 Printeii in GrenI Britain HETEROSPORY: THE MOST ITERATIVE KEY INNOVATION IN THE EVOLUTIONARY HISTORY OF THE PLANT KINGDOM BY RICHARD M. BATEMAN' AND WILLIAM A. DiMlCHELE' ' Departments of Earth and Plant Sciences, Oxford University, Parks Road, Oxford OXi 3P/?, U.K. {Present addresses: Royal Botanic Garden Edinburiih, Inverleith Rojv, Edinburgh, EIIT, SLR ; Department of Geology, Royal Museum of Scotland, Chambers Street, Edinburgh EHi ijfF) '" Department of Paleohiology, National Museum of Natural History, Smithsonian Institution, Washington, DC^zo^bo, U.S.A. CONTENTS I. Introduction: the nature of hf^terospon' ......... 345 U. Generalized life history of a homosporous polysporangiophyle: the basis for evolutionary excursions into hetcrospory ............ 348 III, Detection of hcterospory in fossils. .......... 352 (1) The need to extrapolate from sporophyte to gametophyte ..... 352 (2) Spatial criteria and the physiological control of heterospory ..... 351; IV. Iterative evolution of heterospory ........... ^dj V. Inter-cladc comparison of levels of heterospory 374 (1) Zosterophyllopsida 374 (2) Lycopsida 374 (3) Sphenopsida . 377 (4) PtiTopsida 378 (5) f^rogymnospermopsida ............ 380 (6) Gymnospermopsida (including Angiospermales) . 384 (7) Summary: patterns of character acquisition ....... 386 VI. Physiological control of hetcrosporic phenomena ........ 390 VII. How the sporophyte progressively gained control over the gametophyte: a 'just-so' story 391 (1) Introduction: evolutionary antagonism between sporophyte and gametophyte 391 (2) Homosporous systems ............ 394 (3) Heterosporous systems ............ 39(1 (4) Total sporophytic control: seed habit 401 VIII. Summary .... ... 404 IX. .•Acknowledgements 407 X. References 407 I. I.NIRODUCTION: THE NATURE OF HETEROSPORY 'Heterospory' sensu lato has long been one of the most popular re\ie\v topics in organismal botany. -
Micromasters of the Earth
Micromasters of the Earth Anna WĘGRZYN – the Department of Environmental Biotechnology at the Faculty of Energy and Environmental Engineering at the Silesian University of Technology, Gliwice Please cite as: CHEMIK 2011, 65, 11, 1182-1189 Introduction membrane constitutes about 25% of the whole bacterium mass. It is estimated that our planet was formed about 4.6 billion Peptidoglycan (murein) is a fundamental substance of the bacterial cell years ago. At the very beginning, it was just a lifeless ball of melted wall. In their cell walls, bacteria can contain different quantities of murein magma. The Earth surface was gradually getting cool until reaching which is connected with a diversified sensitivity to dyes. Depending the temperature at which water and other chemical compounds on the number of peptidoglycan layers, the applied dyes (e.g. crystal could have been created. First traces of life are being discovered in violet) are retained inside the cell wall or leached from it. This is the rocks formed about 3.85 billion years ago. Stromatolites - biogenic basis for classifying bacteria into a group of Gram-positive or Gram- rocks dated at about 3.4 billion years which formation was connected negative bacteria (originating from the name of the Danish scientist with activities of cyanobacteria – autotrophic organisms being able to Gram who was the first person to perform the complex staining with XII Conference Environmental produce oxygen in the process of photosynthesis, constitute the fossil crystal violet in 1884). The cells of Gram-negative bacteria contain trace of the prokaryotic structure1 of primitive forms. The creation of lower quantities of murein than in case of Gram-positive bacteria. -
Distribution and Characteristics of Bacillus Bacteria Associated with Hydrobionts and the Waters of the Peter the Great Bay, Sea of Japan I
ISSN 0026-2617, Microbiology, 2008, Vol. 77, No. 4, pp. 497–503. © Pleiades Publishing, Ltd., 2008. Original Russian Text © I.A. Beleneva, 2008, published in Mikrobiologiya, 2008, Vol. 77, No. 4, pp. 558–565. EXPERIMENTAL ARTICLES Distribution and Characteristics of Bacillus Bacteria Associated with Hydrobionts and the Waters of the Peter the Great Bay, Sea of Japan I. A. Beleneva1 Zhirmunskii Institute of Marine Biology, Far East Division, Russian Academy of Sciences, ul. Pal’chevskogo, 17, Vladivostok 690041, Russia Received May 28, 2007 Abstract—Bacilli of the species Bacillus subtilis, B. pumilus, B. mycoides, B. marinus and B. licheniformis (a total of 53 strains) were isolated from 15 invertebrate species and the water of the Vostok Bay, Peter the Great Bay, Sea of Japan. Bacilli were most often isolated from bivalves (22.7%) and sea cucumbers (18.9%); they occurred less frequently in sea urchins and starfish (13.2 and 7.5%, respectively). Most of bacilli strains were isolated from invertebrates inhabiting silted sediments. No Bacillus spp. strains were isolated from invertebrates inhabiting stony and sandy environments. The species diversity of bacilli isolated from marine objects under study was low. Almost all bacterial isolates were resistant to lincomycin. Unlike B. pumilus, B. subtilis isolates were mostly resistant to benzylpenicillin and ampicillin. Antibiotic sensitivity of B. licheniformis strains was variable (two strains were resistant to benzylpenicillin and oxacillin, while one was sensitive). A significant fraction of isolated bacilli contained pigments. Pigmented strains were more often isolated from seawater sam- ples, while colorless ones predominated within hydrobionts. B. subtilis colonies had the broadest range of co- lors. -
Antonie Van Leeuwenhoek Journal of Microbiology
Antonie van Leeuwenhoek Journal of Microbiology Kroppenstedtia pulmonis sp. nov. and Kroppenstedtia sanguinis sp. nov., isolated from human patients --Manuscript Draft-- Manuscript Number: ANTO-D-15-00548R1 Full Title: Kroppenstedtia pulmonis sp. nov. and Kroppenstedtia sanguinis sp. nov., isolated from human patients Article Type: Original Article Keywords: Kroppenstedtia species, Kroppenstedtia pulmonis, Kroppenstedtia sanguinis, polyphasic taxonomy, 16S rRNA gene, thermoactinomycetes Corresponding Author: Melissa E Bell, MS Centers for Disease Control and Prevention Atlanta, Georgia UNITED STATES Corresponding Author Secondary Information: Corresponding Author's Institution: Centers for Disease Control and Prevention Corresponding Author's Secondary Institution: First Author: Melissa E Bell, MS First Author Secondary Information: Order of Authors: Melissa E Bell, MS Brent A. Lasker, PhD Hans-Peter Klenk, PhD Lesley Hoyles, PhD Catherine Spröer Peter Schumann June Brown Order of Authors Secondary Information: Funding Information: Abstract: Three human clinical strains (W9323T, X0209T and X0394) isolated from lung biopsy, blood and cerebral spinal fluid, respectively, were characterized using a polyphasic taxonomic approach. Comparative analysis of the 16S rRNA gene sequences showed the three strains belonged to two novel branches within the genus Kroppenstedtia: 16S rRNA gene sequence analysis of W9323T showed closest sequence similarity to Kroppenstedtia eburnea JFMB-ATE T (95.3 %), Kroppenstedtia guangzhouensis GD02T (94.7 %) and strain X0209T (94.6 %); sequence analysis of strain X0209T showed closest sequence similarity to K. eburnea JFMB-ATE T (96.4 %) and K. guangzhouensis GD02T (96.0 %). Strains X0209T and X0394 were 99.9 % similar to each other by 16S rRNA gene sequence analysis. The DNA-DNA relatedness was 94.6 %, confirming that X0209T and X0394 belong to the same species. -
Aerobic Endospore Procedure
Office of Research and Development Photos Aerobic Endospore Procedure Laura A. Boczek Microbiologist US EPA – Office of Research and Development Aerobic Endospore Background Aerobic endospores are protective structures that some genera of bacteria have the ability to produce in response to a stressful environment. These genera are in general harmless to humans and are saprophytic organisms that are ubiquitous in many soil and water environments. These organisms can stay in the endospore form until conditions are favorable for them to germinate out of the endospore state to a vegetative state. This allows them to persist in their environment and resist many environmental stressors such as heat, desiccation, disinfection, and irradiation. 2 Aerobic Endospores Procedure Standard Methods 9218 A & B – outlines how to culture and measure aerobic endospores. Basic steps : 1. Obtaining a representative sample 2. Killing off any vegetative cells that could be in the sample by heat treatment 3. Using membrane filtration to concentrate endopsores in sample and then allow them to grow to enumerate Representative sample Samples should be collected using sterile wide mouth containers and care should be taken not to contaminate the samples during collection by using aseptic technique. Samples that contain a disinfectant residual such as chlorine should have sodium thiosulfate added to the sample bottle prior to collection in order to quench the chlorine. Samples should include a sufficient volume that can be processed to adequately determine treatment efficacy. • Sample waters will contain various amounts of endospores. Therefore if treatment efficacy is the reason why aerobic endospores are being measured a larger volume of sample may need to be collected and processed to determine efficacy. -
Chapter 11: Bacteria Bacterial Groups
Bacterial Groups u Most widely accepted taxonomic classification for bacteria is Bergey’s Manual of Systematic Bacteriology. u 5000 bacterial species identified, 3100 classified. Chapter 11: Bacteria u Bacteria are divided into four divisions (phyla) according to the characteristics of their cell walls. u Each division is divided into sections according to: u Gram stain reaction u Cell shape u Cell arrangements u Oxygen requirements u Motility u Nutritional and metabolic properties u Each section contains several genera. Four Divisions of Bacteria Classification of Bacteria Procaryotes Gram-Negative Division II Wall-Less Archaea Bacteria Bacteria Bacteria Bacteria (Gracilicutes) (Firmicutes) (Tenericutes) (Mendosicutes) Thin Cell Walls Thick cell Walls Lack cell walls Unusual cell walls Division I. Gram-Negative Bacteria Gram Negative Bacteria Spirochetes 1. Spirochetes u Helical shape. Flexible. u Contain two or more axial filaments (endoflagella). u Move in corkscrew pattern. u Medically important members: F Treponema pallidum: Syphilis F Borrelia spp.: Lyme disease, relapsing fever F Leptospira: Leptospirosis 1 Syphilis is Caused by a Spirochete Lyme Disease is Caused by a Spirochete Primary syphilitic chancre and secondary rash. Source: Tropical Medicine and Parasitology, 1997 Lyme Disease early lesion at tick bite site. Source: Medical Microbiology, 1998 2. Aerobic, Motile, Helical/Vibroid Gram- Negative Bacteria Gram Negative Bacteria u Rigid helical shape or curved rods. Aerobic, Motile, Helical/Vibroid u Lack axial filaments (endoflagella); have polar Gram-Negative Bacteria flagella instead. u Most are harmless aquatic organisms. u Genus Azospirillum fixes nitrogen in soil. u Genus Bdellovibrio attacks other bacteria. u Important pathogens include: F Campylobacter jejuni: Most common bacterial food- borne intestinal disease in the United States (2 million cases/year). -
Technical Method
J Clin Pathol: first published as 10.1136/jcp.38.9.1073 on 1 September 1985. Downloaded from J Clin Pathol 1985;38:1073-1084 Technical method Use of microwaves for acid and alcohol fast staining S HAFIZ, RC SPENCER, MARGARET LEE, organism depends on several factors but remains an HILARY GOOCH, BI DUERDEN Department important component in the identification of a ofMedical Microbiology, Sheffield University Medi- restricted group of organisms. cal School, Sheffield The technical problems associated with the classic Ziehl-Neelsen method include the dangers of heat- ing by flaming torch in laboratories in which volatile Certain bacteria that are characterised by a high organic solvents are used, the deposits that accumu- content of lipid in their cell walls cannot be stained late on the underside of the slide as a result of heat- by simple stains, and either heat or prolonged con- ing, and the crystalline deposits of stain that collect tact is required to drive the stain into the cells; once on the film as a result of evaporation and drying. stained they resist decolourisation by mineral acids This method also requires 20-30 minutes of or acid and alcohol. These organisms are designated laboratory time. Numerous minor modifications acid fast or acid and alcohol fast. They include have been made to the Ziehl-Neelsen method by Mycobacterium tuberculosis and related mycobac- increasing the concentration of carbolic magenta or teria, Mycobacterium leprae, and certain of the by cold staining techniques,'0-'2 but the basic prob- actinomycetes. Koch first stained the tubercle bacil- lems remain. lus by immersion in an alkaline solution of Some of the problems may be overcome by the copyright. -
Spore Reproduction of Japanese Climbing Fern in Florida As a Function of Management Timing
Spore Reproduction of Japanese Climbing Fern in Florida as a Function of Management Timing Candice M. Prince1, Dr. Gregory E. MacDonald1, Dr. Kimberly Bohn2, Ashlynn Smith1, and Dr. Mack Thetford1 1University of Florida, 2Pennsylvania State University Photo Credit: Chris Evans, University of Illinois, Bugwood.org Exotic climbing ferns in Florida Old world climbing fern Japanese climbing fern (Lygodium microphyllum) (Lygodium japonicum) Keith Bradley, Atlas of Florida Vascular Plants Chris Evans, University of Illinois, Bugwood.org Japanese climbing fern (Lygodium japonicum) • Native to temperate and tropical Asia • Climbing habit • Early 1900s: introduced as an ornamental1 • Long-distance dispersal via wind, pine straw bales2,3 Chris Evans, University of Illinois, Bugwood.org Dennis Teague, U.S. Air Force, Bugwood.org Distribution • Established in 9 southeastern states • In FL: present throughout the state, USDA NRCS National Plant Data Team, 2016 but most invasive in northern areas • Winter dieback, re-sprouts from rhizomes1 • Occurs in mesic and temporally hydric areas1 Atlas of Florida Vascular Plants, Institute of Systemic Botany, 2016 Impacts Chris Evans, University of Illinois, Bugwood.org • Smothers and displaces vegetation, fire ladders • Florida Exotic Pest Plant Council: Category I species Chuck Bargeron, University of Georgia, Bugwood.org • Florida Noxious Weed List • Alabama Noxious Weed List (Class B) Japanese climbing fern: life cycle John Tiftickjian, Sigel Lab, University of Delta State University Louisiana at Lafayette -
Chapter 20 the Proteobacteria
Fig. 20.21 Chapter 20 purple photosynthetic sulfur bacteria The Proteobacteria may have arose from a single photosynthetic ancestor 16S rRNA shows five distinct lineages 12-27-2011 12-28-2011 Class α-proteobacteria Most are oligotrophic (growing at low nutrient level) Fig. 20.11 Genus Rhizobium motile rods often contain poly-β- hydroxybutyrate (PHB) granules become pleomorphic under adverse conditions grow symbiotically as nitrogen- fixing bacteroids (Æ ammonium) within root nodule cells of legumes Genus Agrobacterium Figure 20.12 transform infected plant cells (crown, roots, and stems) into autonomously proliferating tumors Agrobacterium tumefaciens causes crown gall disease by means of tumor-inducing (Ti) plasmid Crown gall (冠癭) of a tomato plant Agrobacterium Ti (tumor inducing) plamid Transfer the T-DNA to plant and lower fungi Can also mobilize other plasmid with to plant cells A vector used for transgenic plant Fig. 29.13 Genus Brucella important human and animal pathogen (zoonosis) Brucellosis- undulant fever 波型熱 A select agent as biocrime ingestion of contaminated food (milk products); inhalation, via skin wound, rare person-to-person Acute form: flu-like symptom; undulant form: undulant fever, arthritis, and testicular inflammation, neurologic symptom may occur; chronic form: chronic fatigue, depression, and arthritis Class β-proteobacteria Nitrogen metabolism Nitrifying bacteria- Nitrification oxidation of ammonium to nitrite, nitrite further oxidized to nitrate Nitrobacter (α-proteobacteria) Nitrosomonas (β-proteobacteria) Nitrosococcus (γ-proteobacteria) Nitrogen Fixation Burkholderia and Ralstonia (β-proteobacteria) both form symbiotic associations with legumes both have nodulation genes (nod) a common genetic origin with rhizobia (α-proteobacteria) obtained through lateral gene transfer Order Burkholderiales Burkholderia cepacia degrades > 100 organic molecules very active in recycling organic material plant and human pathogen (nosocomial pathogen) a particular problem for cystic fibrosis patients B.