Comparative Genomics S
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Database of Cattle Candidate Genes and Genetic Markers for Milk Production and Mastitis
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by PubMed Central doi:10.1111/j.1365-2052.2009.01921.x Database of cattle candidate genes and genetic markers for milk production and mastitis J. Ogorevc*, T. Kunej*, A. Razpet and P. Dovc Department of Animal Science, Biotechnical Faculty, University of Ljubljana, Domzale, Slovenia Summary A cattle database of candidate genes and genetic markers for milk production and mastitis has been developed to provide an integrated research tool incorporating different types of information supporting a genomic approach to study lactation, udder development and health. The database contains 943 genes and genetic markers involved in mammary gland development and function, representing candidates for further functional studies. The candidate loci were drawn on a genetic map to reveal positional overlaps. For identification of candidate loci, data from seven different research approaches were exploited: (i) gene knockouts or transgenes in mice that result in specific phenotypes associated with mam- mary gland (143 loci); (ii) cattle QTL for milk production (344) and mastitis related traits (71); (iii) loci with sequence variations that show specific allele-phenotype interactions associated with milk production (24) or mastitis (10) in cattle; (iv) genes with expression profiles associated with milk production (207) or mastitis (107) in cattle or mouse; (v) cattle milk protein genes that exist in different genetic variants (9); (vi) miRNAs expressed in bovine mammary gland (32) and (vii) epigenetically regulated cattle genes associated with mammary gland function (1). Fourty-four genes found by multiple independent analyses were suggested as the most promising candidates and were further in silico analysed for expression levels in lactating mammary gland, genetic variability and top biological func- tions in functional networks. -
List of Horse Breeds 1 List of Horse Breeds
List of horse breeds 1 List of horse breeds This page is a list of horse and pony breeds, and also includes terms used to describe types of horse that are not breeds but are commonly mistaken for breeds. While there is no scientifically accepted definition of the term "breed,"[1] a breed is defined generally as having distinct true-breeding characteristics over a number of generations; its members may be called "purebred". In most cases, bloodlines of horse breeds are recorded with a breed registry. However, in horses, the concept is somewhat flexible, as open stud books are created for developing horse breeds that are not yet fully true-breeding. Registries also are considered the authority as to whether a given breed is listed as Light or saddle horse breeds a "horse" or a "pony". There are also a number of "color breed", sport horse, and gaited horse registries for horses with various phenotypes or other traits, which admit any animal fitting a given set of physical characteristics, even if there is little or no evidence of the trait being a true-breeding characteristic. Other recording entities or specialty organizations may recognize horses from multiple breeds, thus, for the purposes of this article, such animals are classified as a "type" rather than a "breed". The breeds and types listed here are those that already have a Wikipedia article. For a more extensive list, see the List of all horse breeds in DAD-IS. Heavy or draft horse breeds For additional information, see horse breed, horse breeding and the individual articles listed below. -
Effects of B-K-Casein (CSN2-CSN3) Haplotypes and B-Lactoglobulin
J. Dairy Sci. 93 :3797–3808 doi: 10.3168/jds.2009-2778 © American Dairy Science Association®, 2010 . Effects of β-κ-casein (CSN2-CSN3) haplotypes and β-lactoglobulin (BLG) genotypes on milk production traits and detailed protein composition of individual milk of Simmental cows 1 V. Bonfatti ,* G. Di Martino ,* A. Cecchinato ,* D. Vicario ,† and P. Carnier * * Department of Animal Science, University of Padova, viale dell’Università 16, 35020, Legnaro, Padova, Italy † Italian Simmental Cattle Breeders Association, via Nievo 19, 33100, Udine, Italy ABSTRACT and αS1-CN. Estimated additive genetic variance for investigated traits ranged from 14 to 39% of total vari- The aim of this study was to investigate the effects ance. Increasing the frequency of specific genotypes or of CSN2-CSN3 (β-κ-casein) haplotypes and BLG haplotypes by selective breeding might be an effective (β-lactoglobulin) genotypes on milk production traits, way to change milk protein composition. content of protein fractions, and detailed protein compo- Key words: casein haplotypes , BLG genotype , milk sition of individual milk of Simmental cows. Content of protein composition , Simmental the major protein fractions was measured by reversed- phase HPLC in individual milk samples of 2,167 cows. INTRODUCTION Protein composition was measured as percentage of each casein (CN) fraction to total CN and as percent- Most research concerning milk protein polymor- age of β-lactoglobulin (β-LG) to total whey protein. phisms has focused on the associations of CSN3 (κ-CN) Genotypes at CSN2, CSN3, and BLG were ascertained and BLG (β-LG) polymorphisms with milk production by reversed-phase HPLC, and CSN2-CSN3 haplotype traits, coagulation time, curd firmness, and cheese yield. -
(12) Patent Application Publication (10) Pub. No.: US 2014/0186843 A1 ZHANG Et Al
US 2014O186843A1 (19) United States (12) Patent Application Publication (10) Pub. No.: US 2014/0186843 A1 ZHANG et al. (43) Pub. Date: Jul. 3, 2014 (54) METHODS, SYSTEMS, AND APPARATUS FOR (22) Filed: Dec. 12, 2013 IDENTIFYING TARGET SEQUENCES FOR CAS ENZYMES OR CRISPR-CAS SYSTEMIS Related U.S. Application Data FORTARGET SEQUENCES AND (60) Provisional application No. 61/736,527, filed on Dec. CONVEYING RESULTS THEREOF 12, 2012, provisional application No. 61/748,427, filed on Jan. 2, 2013, provisional application No. (71) Applicants: Massachusetts Institute of Technology, 61/791,409, filed on Mar. 15, 2013, provisional appli Cambridge, MA (US): THE BROAD cation No. 61/835,931, filed on Jun. 17, 2013. INSTITUTE, INC., Cambridge, MA (US) Publication Classification (72) Inventors: Feng ZHANG, Cambridge, MA (US); (51) Int. C. Naomi HABIB, Cambridge, MA (US) CI2O I/68 (2006.01) (52) U.S. C. (73) Assignees: Massachusetts Institute of Technology, CPC ...................................... CI2O I/686 (2013.01) Cambridge, MA (US): THE BROAD USPC ....................................... 435/6.12: 435/287.2 INSTITUTE, INC., Cambridge, MA (US) (57) ABSTRACT Disclosed are locational or positional methods concerning (21) Appl. No.: 14/104,900 CRISPR-Cas systems, and apparatus therefor. Patent Application Publication Jul. 3, 2014 Sheet 1 of 50 US 2014/O186843 A1 s g:23:3:3: 83: FIG. 1 Patent Application Publication Jul. 3, 2014 Sheet 2 of 50 US 2014/O186843 A1 §§§§ §§§§§§ Patent Application Publication Jul. 3, 2014 Sheet 3 of 50 US 2014/O186843 A1 NLs SpCass GFP SpCass GFP NS NLS Spass GFP LS 8 N.S. tery RNase Sp RNase is Cerry NS FG. -
Genome Variants Associated with RNA Splicing Variation in Bovine Are
bioRxiv preprint doi: https://doi.org/10.1101/220251; this version posted April 5, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Genome variants associated with RNA splicing variation in bovine are 2 extensively shared between tissues 3 Ruidong Xiang1,2,*, Ben J. Hayes2,3, Christy J. Vander Jagt2, Iona M. MacLeod2, Majid 4 Khansefid2, Phil J. Bowman2,6, Zehu Yuan2, Claire P. Prowse-Wilkins2, Coralie M. Reich2, 5 Brett A. Mason2, Josie B. Garner4, Leah C. Marett4, Yizhou Chen5, Sunduimijid Bolormaa2, 6 Hans D. Daetwyler2,6, Amanda J. Chamberlain2 and Michael E. Goddard1,2 7 1Faculty of Veterinary & Agricultural Science, University of Melbourne, Parkville, VIC 3010, 8 Australia. 2Agriculture Victoria, AgriBio, Centre for AgriBioscience, Bundoora, VIC 3083, 9 Australia. 3Queensland Alliance for Agriculture and Food Innovation, Centre for Animal 10 Science, University of Queensland, St. Lucia, QLD 4067, Australia. 4Agriculture Victoria, 11 Dairy Production Science, Ellinbank, VIC, 3821, Australia. 5Elizabeth Macarthur 12 Agricultural Institute, New South Wales Department of Primary Industries, Camden, NSW 13 2570, Australia. 6School of Applied Systems Biology, La Trobe University, Bundoora, VIC 14 3083, Australia. 15 *Corresponding author: Dr. Ruidong Xiang; 16 Ruidong Xiang: [email protected]; 17 Ben J. Hayes: [email protected]; 18 Christy J. Vander Jagt: [email protected]; 19 Iona M. MacLeod: [email protected]; 20 Majid Khansefid: [email protected]; 21 Phil J. -
4 Day a Week School Classes Underway
34th Year, No. 50 Ph. 814-683-4841 P.O. BOX 451, LINESVILLE, PA 16424 [email protected] Monday, February 1, 2021 • CNRP ACCEPTING NEW PATIENTS, LINESVILLE! • CONNEAUTVILLE BORO MAY BUILD NEW OFFICE! Community News changes noted, hard copy Feb. 8 4 day a week school Due to the economic crisis caused by the COVID-19 virus, Community News, has changed to an online/hard copy publication schedule through February with decisions at that time about returning to a weekly hard copy edition. classes underway Community News will offer a free online edition of Community News on Monday, January 4, 2021, Starting today, Monday, Febru- ten. the hard copy edition on Monday, January 11, 2021, then online editions on January 18, January 25, and ary 1, all Conneaut schools are re- Additionally, if you, or anyone February 1, with a hard copy edition Monday, February 8. Online editions will continue then through turning to full attendance Monday in your household, is symptomatic, the rest of February. through Thursday while Friday awaiting test results, or have had a Hard copy editions will carry many of the online edition stories and advertising for those who may will continue to be a virtual day for positive test, please contact your have been unable to read the online editions. students. This will also allow for school nurse to let them know. deep cleaning of buildings. Some extra runs to keep buses The Community News ON-LINE editions can be viewed simply by typing in Again, all students will attend as un-crowded as possible, extra each day, Monday through Thurs- lunch periods and/or using gyms communitynewslinesville.com day and virtually from home on for lunches as well are planned. -
Transcriptome Signature of the Lactation Process in a Fat-Tailed Sheep Identifes with Integrative Approach of RNA-Seq and Supervised Machine Learning Models
Transcriptome signature of the lactation process in a fat-tailed sheep identies with integrative approach of RNA-Seq and Supervised Machine Learning models Mohammad Farhadian ( [email protected] ) University of Tabriz Seyed Abbas Rafat University of Tabriz Bahman Panahi ABRII Esmaeil Ebrahimie The University of Adelaide Research article Keywords: RNA-Seq, Milk, Sheep, Gene network, Gene Ontology Posted Date: July 18th, 2019 DOI: https://doi.org/10.21203/rs.2.11678/v1 License: This work is licensed under a Creative Commons Attribution 4.0 International License. Read Full License Page 1/26 Abstract Background The mammary gland is a vital organ in mammalian that undergoes a substantial physiological transformation during the lactation process. Understanding the underlying molecular mechanism of the lactation process in the mammary gland is essential to unravel of the complexity of milk production process. This study was investigated the transcriptome proles of milk between two time point of lactation (day 20 as before peak time point (BF) and day 70 as after peak(AF)) in Iranian fat- tailed Ghezel sheep breed. Functional impacts of differentially expressed genes (DEGs) between two time points of the lactation were surveyed with Gene Ontology (GO) and Protein-Protein Interaction (PPI) network analysis. Moreover, to identify the transcriptome signature of the lactation process, supervised machine learning algorithms were integrated. Results Totally, 75 genes were dened as DEGs between BF and AF of lactation. Gene ontology of DEGs mainly enriched in metabolic process and oxidative phosphorylation. Moreover, PPI networks analysis highlighted the contribution of peroxisome proliferator- activated receptors (PPAR) signaling in the lactation process, oxidative phosphorylation and metabolic pathways. -
Cellular Senescence Bypass Screen Identifies New Putative Tumor
Oncogene (2008) 27, 1961–1970 & 2008 Nature Publishing Group All rights reserved 0950-9232/08 $30.00 www.nature.com/onc ORIGINAL ARTICLE Cellular senescence bypass screen identifies new putative tumor suppressor genes JFM Leal1, J Fominaya1, A Casco´ n2, MV Guijarro1, C Blanco-Aparicio1, M Lleonart3, ME Castro1, SRamon y Cajal 3, M Robledo2, DH Beach4 and A Carnero1 1Experimental Therapeutics Programme, Centro Nacional de Investigaciones Oncolo´gicas (CNIO), Madrid, Spain; 2Molecular Pathology Programme, Centro Nacional de Investigaciones Oncolo´gicas (CNIO), Madrid, Spain; 3Departamento de Patologı´a, Hospital Vall d’Hebron, Barcelona, Spain and 4Institute for Cell and Molecular Sciences, Center for Cutaneous Biology, London, UK Senescence is a mechanism that limits cellular lifespan and Introduction constitutes a barrier against cellular immortalization. To identify new senescence regulatory genes that might play a Replicative senescence is characterized by a progressive role in tumorigenesis, we have designed and performed a loss of proliferative potential with the increase of popu- large-scale antisense-based genetic screen in primary lation doublings, resulting in a permanent and irrever- mouse embryo fibroblasts (MEFs). Out of this screen, sible cell-cycle arrest. Although the process of senescence we have identified five different genes through which loss occurs both in vitro and in vivo (Dimri et al., 1995; of function partially bypasses senescence. These genes Schmitt et al., 2002; Shay and Roninson, 2004; Braig belong to very different biochemical families: csn2 et al., 2005; Collado et al., 2005; Michaloglou et al., (component of the Cop9 signalosome), aldose reductase 2005), the transition to the senescent phenotype is (a metabolic enzyme) and brf1 (subunit of the RNA commonly studied in culture where a cell population polymerase II complex), S-adenosyl homocysteine hydro- can be grown and monitored. -
Rabbit Anti-COPS3/FITC Conjugated Antibody-SL23085R-FITC
SunLong Biotech Co.,LTD Tel: 0086-571- 56623320 Fax:0086-571- 56623318 E-mail:[email protected] www.sunlongbiotech.com Rabbit Anti-COPS3/FITC Conjugated antibody SL23085R-FITC Product Name: Anti-COPS3/FITC Chinese Name: FITC标记的COP9信号复合体亚基3抗体 COP9 Signalosome Complex Subunit 3; CSN10; JAB1 Containing Signalosome Alias: Subunit 3; SGN3; Signalosome Subunit 3; CSN3_HUMAN. Organism Species: Rabbit Clonality: Polyclonal React Species: ICC=1:50-200IF=1:50-200 Applications: not yet tested in other applications. optimal dilutions/concentrations should be determined by the end user. Molecular weight: 48kDa Form: Lyophilized or Liquid Concentration: 2mg/1ml immunogen: KLH conjugated synthetic peptide derived from human COPS3 Lsotype: IgG Purification: affinity purified by Protein A Storage Buffer: 0.01M TBS(pH7.4) with 1% BSA, 0.03% Proclin300 and 50% Glycerol. Storewww.sunlongbiotech.com at -20 °C for one year. Avoid repeated freeze/thaw cycles. The lyophilized antibody is stable at room temperature for at least one month and for greater than a year Storage: when kept at -20°C. When reconstituted in sterile pH 7.4 0.01M PBS or diluent of antibody the antibody is stable for at least two weeks at 2-4 °C. background: The protein encoded by this gene possesses kinase activity that phosphorylates regulators involved in signal transduction. It phosphorylates I kappa-Balpha, p105, and c-Jun. It acts as a docking site for complex-mediated phosphorylation. The gene is Product Detail: located within the Smith-Magenis syndrome region on chromosome 17. Two transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Nov 2010]. -
Horse Breeds - Volume 2
Horse breeds - Volume 2 A Wikipedia Compilation by Michael A. Linton Contents Articles Danish Warmblood 1 Danube Delta horse 3 Dølehest 4 Dutch harness horse 7 Dutch Heavy Draft 10 Dutch Warmblood 12 East Bulgarian 15 Estonian Draft 16 Estonian horse 17 Falabella 19 Finnhorse 22 Fjord horse 42 Florida Cracker Horse 47 Fouta 50 Frederiksborg horse 51 Freiberger 53 French Trotter 55 Friesian cross 57 Friesian horse 59 Friesian Sporthorse 64 Furioso-North Star 66 Galiceno 68 Galician Pony 70 Gelderland horse 71 Georgian Grande Horse 74 Giara horse 76 Gidran 78 Groningen horse 79 Gypsy horse 82 Hackney Horse 94 Haflinger 97 Hanoverian horse 106 Heck horse 113 Heihe horse 115 Henson horse 116 Hirzai 117 Hispano-Bretón 118 Hispano-Árabe 119 Holsteiner horse 120 Hungarian Warmblood 129 Icelandic horse 130 Indian Half-Bred 136 Iomud 137 Irish Draught 138 Irish Sport Horse 141 Italian Heavy Draft 143 Italian Trotter 145 Jaca Navarra 146 Jutland horse 147 Kabarda horse 150 Kaimanawa horse 153 Karabair 156 Karabakh horse 158 Kathiawari 161 Kazakh horse 163 Kentucky Mountain Saddle Horse 165 Kiger Mustang 168 Kinsky horse 171 Kisber Felver 173 Kladruber 175 Knabstrupper 178 Konik 180 Kustanair 183 References Article Sources and Contributors 185 Image Sources, Licenses and Contributors 188 Article Licenses License 192 Danish Warmblood 1 Danish Warmblood Danish Warmblood Danish warmblood Alternative names Dansk Varmblod Country of origin Denmark Horse (Equus ferus caballus) The Danish Warmblood (Dansk Varmblod) is the modern sport horse breed of Denmark. Initially established in the mid-20th century, the breed was developed by crossing native Danish mares with elite stallions from established European bloodlines. -
Book of Abstracts of the 59Th Annual Meeting of the European Association for Animal Production
Book of Abstracts of the 59th Annual Meeting of the European Association for Animal Production Book of abstracts No. 14 (2008) Vilnius, Lithuania 24-27 August 2008 Wageningen Academic P u b l i s h e r s Book of Abstracts of the 59th Annual Meeting of the European Association for Animal Production EAAP - European Federation of Animal Science The European Association for Animal Production wishes to express its appreciation to the Ministero delle Politiche Agricole e Forestali (Italy) and the Associazione Italiana Allevatori (Italy) for their valuable support of its activities. Book of Abstracts of the 59th Annual Meeting of the European Association for Animal Production Vilnius, Lithuania, August 24th - 27th, 2008 This work is subject to copyright. All rights are reserved, whether the whole or part of the material is concerned. Nothing from this publication may be translated, reproduced, stored in a computerised system or published in any form or in any manner, including electronic, mechanical, reprographic or photographic, without prior written permission from the publisher, Wageningen Academic Publishers, P.O. Box 220, 6700 AE Wageningen, the Netherlands, www.WageningenAcademic.com The individual contributions in this publication and any liabilities arising from ISBN: 978-90-8686-074-6 them remain the responsibility of the e-ISBN: 978-90-8686-646-5 authors. DOI: 10.3920/978-90-8686-646-5 The designations employed and the presentation of material in this publication ISSN 1382-6077 do not imply the expression of any opinion whatsoever on the part of the European Association for Animal Production First published, 2008 concerning the legal status of any country, territory, city or area or of its authorities, or concerning the delimitation of its © Wageningen Academic Publishers frontiers or boundaries. -
The Ecological Value of Feral Populations in Europe
Safeguard for Agricultural Varieties in Europe SAVE Sicherung der landwirtschaftlichen ArtenVielfalt in Europa Sauvegarde pour l'Agriculture des Variétés d'Europe foundation SAVE Project-Office: Schneebergstrasse 17, CH-9000 St.Gallen Tel.: +41-71/ 222 74 10 Website: http://www.save-foundation.net Mail: [email protected] The Ecological Value of Feral Populations in Europe Project to review the current situation and develop a network for the management of feral and semi-feral animal populations Interim report, end of 2011: Initial recording and assessment of feral and semi-feral livestock populations in Europe Introduction In many countries and regions in Europe, there are populations of feral domestic breeds ("feral populations"). They are largely ignored by the public, unless they disturb agricul- ture and rural development. However, feral populations can make an important con- tribution to the conservation of traditional agro- ecosystems. In many places there large herbivores, im- portant for the conservation of the natural environment, are no longer present . This gap can be filled by feral or semi-feral livestock, such as horses or cattle. Further- more, these populations can be a model for extensive conservation of important genetic resources (such as so-called island popula- tions). The feral populations, Giara Pony, Italy ( http://www.fontesarda.it/imgsarde/giariasid.htm#tombe ) their situation and hus- bandry conditions and problems have never been researched in Europe. This project therefore aims to collect data and information on the occurrence of feral breeds and va- rieties of livestock, to promote the interdisciplinary networking of key people from in situ / on farm – conversation work and nature conservation and to develop best practice man- agement plans .