Lepidoptera: Geometridae, Geometrinae)
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Species Identification in Malaise Trap Samples by DNA Barcoding Based on NGS Technologies and a Scoring Matrix
RESEARCH ARTICLE Species Identification in Malaise Trap Samples by DNA Barcoding Based on NGS Technologies and a Scoring Matrix Jérôme Morinière1*, Bruno Cancian de Araujo1, Athena Wai Lam1, Axel Hausmann1,3, Michael Balke1,3, Stefan Schmidt1, Lars Hendrich1, Dieter Doczkal1, Berthold Fartmann2, Samuel Arvidsson2, Gerhard Haszprunar1,3 1 SNSB, Bavarian State Collection of Zoology, Münchhausenstrasse 21, 81247, München, Germany, 2 LGC Genomics GmbH, Ostendstraße 25, TGS Haus 8, 12459, Berlin, Germany, 3 GeoBio-Center der a11111 LMU München, München, Germany * [email protected] Abstract OPEN ACCESS The German Barcoding initiatives BFB and GBOL have generated a reference library of Citation: Morinière J, Cancian de Araujo B, Lam AW, more than 16,000 metazoan species, which is now ready for applications concerning next Hausmann A, Balke M, Schmidt S, et al. (2016) generation molecular biodiversity assessments. To streamline the barcoding process, we Species Identification in Malaise Trap Samples by have developed a meta-barcoding pipeline: We pre-sorted a single malaise trap sample DNA Barcoding Based on NGS Technologies and a Scoring Matrix. PLoS ONE 11(5): e0155497. (obtained during one week in August 2014, southern Germany) into 12 arthropod orders doi:10.1371/journal.pone.0155497 and extracted DNA from pooled individuals of each order separately, in order to facilitate Editor: Diego Fontaneto, Consiglio Nazionale delle DNA extraction and avoid time consuming single specimen selection. Aliquots of each ordi- Ricerche (CNR), ITALY nal-level DNA extract were combined to roughly simulate a DNA extract from a non-sorted Received: January 26, 2016 malaise sample. Each DNA extract was amplified using four primer sets targeting the CO1- 5’ fragment. -
Proceedings of the Tenth Forum Herbulot 2018. Integrative Taxonomy, a Multidisciplinary Approach to Answer Compli- Cated Taxonomic Questions
SPIXIANA 42 2 291-320 München, Dezember 2019 ISSN 0341-8391 Proceedings of the tenth FORUM HERBULOT 2018. Integrative taxonomy, a multidisciplinary approach to answer compli- cated taxonomic questions (Stuttgart, Germany, 11-16 June 2018) Axel Hausmann & Hossein Rajaei (eds) Hausmann, A. & Rajaei, H. (eds) 2019. Proceedings of the tenth FORUM HERBULOT 2018. Integrative taxonomy, a multidisciplinary approach to answer complicated taxonomic questions (Stuttgart, Germany, 11-16 June 2018). Spixiana 42 (2): 291- 320. The tenth International Congress of FORUM HERBULOT on “Integrative taxonomy, a multidisciplinary approach to answer complicated taxonomic questions” took place in the Staatliches Museum für Naturkunde Stuttgart (SMNS), from 11.- 16.06.2018, with 77 participants and 52 scientific presentations. The proceedings provide short information on the meeting and the abstracts of the oral presenta- tions. Axel Hausmann (corresponding author), SNSB – ZSM, Bavarian State Collection of Zoology, Münchhausenstr. 21, 81247 Munich, Germany; e-mail: [email protected] Short report and results Axel Hausmann & Hossein Rajaei Hausmann, A. & Rajaei, H. 2019. Short report and results. Pp. 291-292 in: Hausmann, A. & Rajaei, H. (eds). Proceedings of the tenth FORUM HERBULOT 2018. Integrative taxonomy, a multidisciplinary approach to answer complicated taxonomic questions (Stuttgart, Germany, 11-16 June 2018). Spixiana 42 (2). Axel Hausmann (corresponding author), SNSB – ZSM, Bavarian State Collection of Zoology, Münchhausenstr. 21, 81247 Mu- nich, Germany; e-mail: [email protected] The meeting was organized by an organization The conference started with a lecture on the ground- team of the ‘Staatliches Museum für Naturkunde breaking effects of “Willi Hennig and the synthesis of Stuttgart’ (SMNS). -
Testing the Global Malaise Trap Program – How Well Does the Current Barcode Reference Library Identify Flying Insects in Germany?
Biodiversity Data Journal 4: e10671 doi: 10.3897/BDJ.4.e10671 General Article Testing the Global Malaise Trap Program – How well does the current barcode reference library identify flying insects in Germany? Matthias F. Geiger‡, Jerome Moriniere§, Axel Hausmann§, Gerhard Haszprunar§, Wolfgang Wägele‡, Paul D.N. Hebert|, Björn Rulik ‡ ‡ Zoologisches Forschungsmuseum Alexander Koenig, Bonn, Germany § SNSB-Zoologische Staatssammlung, München, Germany | Centre for Biodiversity Genomics, Biodiversity Institute of Ontario, University of Guelph, Guelph, Canada Corresponding author: Matthias F. Geiger ([email protected]) Academic editor: Lyubomir Penev Received: 28 Sep 2016 | Accepted: 29 Nov 2016 | Published: 01 Dec 2016 Citation: Geiger M, Moriniere J, Hausmann A, Haszprunar G, Wägele W, Hebert P, Rulik B (2016) Testing the Global Malaise Trap Program – How well does the current barcode reference library identify flying insects in Germany? Biodiversity Data Journal 4: e10671. https://doi.org/10.3897/BDJ.4.e10671 Abstract Background Biodiversity patterns are inherently complex and difficult to comprehensively assess. Yet, deciphering shifts in species composition through time and space are crucial for efficient and successful management of ecosystem services, as well as for predicting change. To better understand species diversity patterns, Germany participated in the Global Malaise Trap Program, a world-wide collection program for arthropods using this sampling method followed by their DNA barcode analysis. Traps were deployed at two localities: “Nationalpark Bayerischer Wald” in Bavaria, the largest terrestrial Natura 2000 area in Germany, and the nature conservation area Landskrone, an EU habitats directive site in the Rhine Valley. Arthropods were collected from May to September to track shifts in the taxonomic composition and temporal succession at these locations. -
Bosco Palazzi
SHILAP Revista de Lepidopterología ISSN: 0300-5267 ISSN: 2340-4078 [email protected] Sociedad Hispano-Luso-Americana de Lepidopterología España Bella, S; Parenzan, P.; Russo, P. Diversity of the Macrolepidoptera from a “Bosco Palazzi” area in a woodland of Quercus trojana Webb., in southeastern Murgia (Apulia region, Italy) (Insecta: Lepidoptera) SHILAP Revista de Lepidopterología, vol. 46, no. 182, 2018, April-June, pp. 315-345 Sociedad Hispano-Luso-Americana de Lepidopterología España Available in: https://www.redalyc.org/articulo.oa?id=45559600012 How to cite Complete issue Scientific Information System Redalyc More information about this article Network of Scientific Journals from Latin America and the Caribbean, Spain and Journal's webpage in redalyc.org Portugal Project academic non-profit, developed under the open access initiative SHILAP Revta. lepid., 46 (182) junio 2018: 315-345 eISSN: 2340-4078 ISSN: 0300-5267 Diversity of the Macrolepidoptera from a “Bosco Palazzi” area in a woodland of Quercus trojana Webb., in southeastern Murgia (Apulia region, Italy) (Insecta: Lepidoptera) S. Bella, P. Parenzan & P. Russo Abstract This study summarises the known records of the Macrolepidoptera species of the “Bosco Palazzi” area near the municipality of Putignano (Apulia region) in the Murgia mountains in southern Italy. The list of species is based on historical bibliographic data along with new material collected by other entomologists in the last few decades. A total of 207 species belonging to the families Cossidae (3 species), Drepanidae (4 species), Lasiocampidae (7 species), Limacodidae (1 species), Saturniidae (2 species), Sphingidae (5 species), Brahmaeidae (1 species), Geometridae (55 species), Notodontidae (5 species), Nolidae (3 species), Euteliidae (1 species), Noctuidae (96 species), and Erebidae (24 species) were identified. -
Desktop Biodiversity Report
Desktop Biodiversity Report Land at Balcombe Parish ESD/14/747 Prepared for Katherine Daniel (Balcombe Parish Council) 13th February 2014 This report is not to be passed on to third parties without prior permission of the Sussex Biodiversity Record Centre. Please be aware that printing maps from this report requires an appropriate OS licence. Sussex Biodiversity Record Centre report regarding land at Balcombe Parish 13/02/2014 Prepared for Katherine Daniel Balcombe Parish Council ESD/14/74 The following information is included in this report: Maps Sussex Protected Species Register Sussex Bat Inventory Sussex Bird Inventory UK BAP Species Inventory Sussex Rare Species Inventory Sussex Invasive Alien Species Full Species List Environmental Survey Directory SNCI M12 - Sedgy & Scott's Gills; M22 - Balcombe Lake & associated woodlands; M35 - Balcombe Marsh; M39 - Balcombe Estate Rocks; M40 - Ardingly Reservior & Loder Valley Nature Reserve; M42 - Rowhill & Station Pastures. SSSI Worth Forest. Other Designations/Ownership Area of Outstanding Natural Beauty; Environmental Stewardship Agreement; Local Nature Reserve; National Trust Property. Habitats Ancient tree; Ancient woodland; Ghyll woodland; Lowland calcareous grassland; Lowland fen; Lowland heathland; Traditional orchard. Important information regarding this report It must not be assumed that this report contains the definitive species information for the site concerned. The species data held by the Sussex Biodiversity Record Centre (SxBRC) is collated from the biological recording community in Sussex. However, there are many areas of Sussex where the records held are limited, either spatially or taxonomically. A desktop biodiversity report from SxBRC will give the user a clear indication of what biological recording has taken place within the area of their enquiry. -
Diversity of Caterpillars (Order Lepidoptera) in Khaoyai National Park, Nakhon Ratchasima Province
Proceedings of International Conference on Biodiversity: IBD2019 (2019); 102 - 115 Diversity of Caterpillars (Order Lepidoptera) in KhaoYai National Park, Nakhon Ratchasima Province Paradorn Dokchan1,2*, Nanthasak Pinkaew1, Sunisa Sanguansub1 and Sravut Klorvuttimontara3 1Department of Entomology, Faculty of Agriculture at Kamphaeng Saen, Kasetsart University KamphaengSaen Campus, Kamphaeng Saen Dictrict, Nakhon Pathom, Thailand 2Environmental Entomology Research and Development Centre, Faculty of Agriculture at KamphaengSaen, Kasetsart University KamphaengSaen Campus, KamphaengSaen District, Nakhon Pathom, Thailand 3Faculty of Liberal Arts and Science, Kasetsart University Kamphaeng Saen Campus, Kamphaeng Saen District, Nakhon Pathom, Thailand *Corresponding author e-mail:[email protected] Abstract: The study of caterpillars diversity was started by sampled caterpillars from 500 meters line transect every 100 meters above mean sea level from 100 meters above mean sea level thru 1,200 meters above sea level in KhaoYai National Park. Caterpillars were sampled every month from January 2017 – June 2017. A total of 3,434 specimens were identified to 86 species, 55 genera, and 19 families and 37 morphospecies. The most abundant species was Euremablanda (n=1,280). The highest diversity was found in 500 meters above mean sea level (H'= 2.66) and the similarity of caterpillar that occurred in different elevation was low. Keywords: caterpillars, elevation, diversity, KhaoYai National Park. Introduction Khao Yai National Park is a Thailand's first national park, it is the third largest national park in Thailand. Situated mainly in Nakhon Ratchasima Province. Khao Yai is part of Dong Phayayen-Khao Yai Forest Complex, a world heritage site declared by UNESCO. In at least five different forest type, Khao Yai National Park has complex ecosystem with richness of plant and animal such as mammal bird reptile and insects. -
The Isabella Plantation Conservation Management Plan February 2012
The Isabella Plantation Conservation Management Plan February 2012 Isabella Plantation Landscape Conservation Management Plan 2012 Prepared by The Royal Parks January 2012 The Royal Parks Rangers Lodge Hyde Park London W2 2UH Tel: 020 7298 2000 Fax: 020 7402 3298 [email protected] i Isabella Plantation Conservation Management Plan CONTENTS 1.0 INTRODUCTION .............................................................................. 3 Richmond Park ............................................................................................................................................. 3 The Management Plan ................................................................................................................................ 4 Aims of the Isabella Plantation Management Plan ................................................................................ 4 Structure of the Plan .................................................................................................................................. 6 2.0 GENERAL AND MANAGEMENT CONTEXT ............................... 7 Location ......................................................................................................................................................... 7 Existing TRP Management Framework ................................................................................................ 10 Management Structure of Richmond Park .......................................................................................... 10 Landscape Management -
º'‡ Èõàπõπ§ ∫ (Lepidoptera: Geometridae) ¢Õ߇¢Μ√—°…“Æ
π‘æπ∏åµâπ©∫—∫ º’‡ ◊ÈÕÀπÕπ§◊∫ (Lepidoptera: Geometridae) ¢Õ߇¢µ√—°…“æ—π∏ÿå —µ«åªÉ“ Œ“≈“-∫“≈“ ®—ßÀ«—¥π√“∏‘«“ »ÿ¿ƒ°…å «—≤π ‘∑∏‘Ï 1 ™—¬«—≤πå ª√–¡«≈2 ÿ√‰°√ ‡æ‘Ë¡§”3 ·≈– »‘√‘æ√ ∑ÕßÕ“√’¬å 4 Abstract Watanasit, S.1, Pramual, C.1, Permkam, S.2, and Thong-Aree, S.3 Geometrid moths (Lepidoptera: Geometridae) in Hala-Bala Wildlife Sanctuary, Narathiwat Province Songklanakarin J. Sci. Technol., 2004, 26(2) : 197-210 The purpose of this research was to investigate the species diversity and abundance of geometrid moths in tropical rain forest of Hala-Bala Wildlife Sanctuary (< 200 meters above sea level), Narathiwat Province, southern Thailand. Field data were collected every 2 months from July 2001 to July 2002. Three light traps were placed 200 meters apart. Moths were collected every 2 hours between 18.00 - 24.00 pm for 1Department of Biology, Faculty of Science, 2Department of Pest Management, Faculty of Natural Resourecs, Prince of Songkla University, Hat Yai, Songkhla, 90112, 3Peat Swamp Hala-Bala Research Station, Narathiwat, 96160 Thailand. 1«∑.¡. ( —µ««‘∑¬“) √Õß»“ µ√“®“√¬å 2«∑.¡. (𑇫»«‘∑¬“) π—°»÷°…“ ¿“§«‘™“™’««‘∑¬“ §≥–«‘∑¬“»“ µ√å 3Ph.D. (Entomology) √Õß»“ µ√“®“√¬å ¿“§«‘™“°“√®—¥°“√»—µ√Ÿæ◊™ §≥–∑√—欓°√∏√√¡™“µ‘ ¡À“«‘∑¬“≈—¬ ߢ≈“π§√‘π∑√å Õ”‡¿ÕÀ“¥„À≠à ®—ßÀ«—¥ ߢ≈“ 90112 4«∑.¡. (™’««‘∑¬“ªÉ“‰¡â) π—°«‘™“°“√ ∂“π’«‘®—¬ —µ«åªÉ“ ªÉ“æ√ÿªÉ“Œ“≈“-∫“≈“ 96160 π√“∏‘«“ Corresponding e-mail : [email protected] √—∫µâπ©∫—∫ 10 µÿ≈“§¡ 2546 √—∫≈ßæ‘¡æå 18 µÿ≈“§¡ 2546 Songklanakarin J. Sci. Technol. Geometrid moths in Hala-Bala Wildlife Sanctuary, Narathiwat Vol. 26 No. 2 Mar.-Apr. 2004 198 Watanasit, S., et al. 3 consecutive nights. Seven hundred and fifty six individuals of geometrid moths comprising 5 subfamilies, 17 tribes, 67 genera and 129 species were collected and identified. -
Manual Versus Automatic Moth Sampling at Equal Light Sources - a Comparison of Catches from Mt
196 JOURNAL OF THE LEPIDOPTERISTS' SOr;IETY jounw/ of the Lepidopterists' Society 58(4), 2004, 196-202 MANUAL VERSUS AUTOMATIC MOTH SAMPLING AT EQUAL LIGHT SOURCES - A COMPARISON OF CATCHES FROM MT. KILIMANJARO JAN C. AXMACHER Institute 410(;, University of Hohenheim, 70593, Stuttgart, Germany; email: [email protected] AND KONRAD FIEDLER Department of Population Ecology, University of Vienna, Althanstrasse 14, A-lOgO Vienna, Austria; email: [email protected] ABSTRACT. Nocturnalmoth e nse mhles are frequently assessed using either catches from automatic light traps or lm~nually col lected samples at artIficial light sources. Up to now, Few studies have compared the influence of these methodological differences on the samples. We compared such samples, attracted by identical light sources, using geometrid moths in the m ontane rainforest belt of Mt. Kilimanjaro, Tanzania, as an example. The average numher of moths caught manually from 1900 h to 2200 h at a light tower - a reflective gauze cylinder with a lamp placed in the middle - was more than ten times higher than that caught in a light trap, with more than half of all spccies only recorded at the li&ht tower. With regard to individuals sampled., catches wcre biased towards the suhfamily Ennorninac in the traps (.51 % versus 30%) and towards Larentiinae in the manual samples (68% versus 44%). It remains to be tested whether the relatively higher reprcsentation of larger-sized Ennominae in the trap catches is due to .later flight activity m SOlne behavio ral differences related to body size. Diversitv (measured as Fisher's alpha) oT light tower catches decreased from clearings (22.4) and secondary forest (21.7) to mature forest (11.0), whjle in the traps, values incI'eased in the same order (Fisher's alpha: 6.0, 12.0, and 14.2). -
Nota Lepidopterologica
©Societas Europaea Lepidopterologica; download unter http://www.biodiversitylibrary.org/ und www.zobodat.at Nota lepid. 19 (1/2) : 91-106 ; 21.XL1996 ISSN 0342-7536 Systematic list of the geometrid moths of the Levant and neighbouring countries Part I : Orthostixinae and Geometrinae Axel Hausmann Zoologische Staatssammlung München, Münchhausenstr. 21, D-81247 München, Germany Summary Specific and subspecific names of the Orthostixinae and Geometrinae (Geo- metridae) occurring in the Levant and neighbouring countries are listed. In the study area 49 species group names refer to valid taxa : 43 species (occurrence of two of these is probable but they are not yet recorded) and six further taxa at subspecific level. Citation of original descriptions, locus typicus and some important synonyms are given. A brief survey of the distribution of the taxa within the study area is added. Zusammenfassmig Art- und Unterartnamen der in der Levante und den umliegenden Ländern vorkommenden Arten der Unterfamilien Orthostixinae und Geometrinae (Geometridae) werden aufgelistet. Im Untersuchungsgebiet beziehen sich 49 Namen der Artgruppe auf gültige Taxa : Neben 43 Arten (in zwei Fällen ist das Vorkommen zu erwarten, aber nicht abgesichert) sind sechs weitere Taxa auf Unterart-Niveau verbreitet. Es werden Originalbeschreibung, locus typicus und einige wichtige Synonyme erwähnt. Ein kurzer ÜberbÜck über die Verbreitung der Taxa im Untersuchungsgebiet wird angefügt. Introduction This is the first paper in the second of three series of publications by the author on the Geometridae of the Middle East. The three series are : 1) Morphology of the species and subspecies occurring in the Levantine basin and neighbouring countries ; with figures of male and female genitalia of all taxa, of venation of all genera, description of external structure of the imago and discussion of relationships at subspecies, species, genus and tribus level. -
Cabo Verde) (Lepidoptera: Geometridae)
2 NachrBl. bayer. Ent. 64 (1/2), 2015 Zur Kenntnis der Spanner-Fauna der Kapverden (Cabo Verde) (Lepidoptera: Geometridae) Eyjolf AISTLEITNER & Axel HAUSMANN Abstract Based on results from collecting at light, the senior author has gathered more than 300 data sets for geometrid moths from Cabo Verde in the years 1998 to 2013. These records belong to 16 species, two of them were new for science, four others were new for the archipelago. The checklist of geometrids of Cabo Verde could be extended from 16 species in the year of 2005 to 22 species today. Vorbemerkung und Dank Seit dem Jahre 1998 verbringt der Erstautor die Wintermonate auf den kapverdischen Inseln, wo er unterschiedliche Insektengruppen untersucht. In der vorliegenden Arbeit werden die faunistischen Ergebnisse und die Phänodaten der Spanner bis zum Jahre 2013 zur Kenntnis gebracht. 7 Phäno- gramme und 8 Fotos ergänzen die Ausführungen. Der herzliche Dank des Erstautors gilt seiner Frau Alcinda, die sich mit Interesse der ihr vorher völlig fremden Materie zuwandte und seine Arbeit verständnisvoll unterstützt sowie seiner Tochter Vanessa, die bei der Datenaufnahme helfend zur Seite stand. Einleitung Die Familie der Geometridae Cabo Verdes umfasste in der letzten publizierten Gesamtliste 16 Arten (BAEZ & GARCIA 2005, HAUSMANN & AISTLEITNER 2008). Zwei Arten wurden bereits kürzlich als neu für die Wissenschaft beschrieben (HAUSMANN 2009), einige Arten sind Insel-Neufunde. Die Gesamtverbreitung wird nach eigenen Recherchen des Zweitautors angegeben. Die Angaben zur Regionalverbreitung basieren auf BAEZ & GARCIA (2005) und wurden z.T. revidiert. Auf zwei kürzlich erschienene Publikationen über die Inseln Sal und Santo Antão wird hingewiesen (VIEIRA 2008; BALITEAU & BALITEAU 2011). -
Landscape-Scale Conservation of Farmland Moths
CHAPTER 8 Landscape-scale conservation of farmland moths Thomas Merckx and David W. Macdonald When through the old oak forest I am gone, Let me not wander in a barren dream John Keats, On Sitting Down to Read King Lear Once Again. 8.1 Scope of agri-environment schemes the ecosystem services (such as crop pollination, pest control, water retention, and soil protection) provided Biodiversity has declined substantially throughout by the adjoining non-farmed land. Nevertheless, some much of the European wider countryside. The most biodiversity of the original ecosystems may be re- promising tools to reverse these declines are widely tained within farmland ecosystems, its amount heavily thought to be agri-environment schemes (AES) (Don- dependent on the spatial extent and degree of farm- ald and Evans 2006). These governmental schemes land intensification. Indeed, although species typic- provide financial rewards for ‘environmentally ally ‘prefer’ one ecosystem, they often occur in, and friendly’ methods of farmland management. However, use resources from, neighbouring ecosystems (Pereira AES do not always produce significant biodiversity and Daily 2006; Dennis 2010). As such, many species benefits (Kleijn et al. 2006; Batáry et al. 2010). For ex- may manage to persist within farmland systems, with ample, in the UK, the broad and shallow ‘Entry Level at least some of them, such as the speckled wood Pa- Stewardship’ has often been unrewarding for wildlife rarge aegeria, originally a woodland butterfly, adapting (e.g. Davey et al. 2010, but see Baker et al. 2012), but, to these ‘novel’ ecosystems (Merckx et al. 2003). As a in many cases, the more targeted ‘higher level’ scheme result, extensively farmed systems can often be char- has exceeded expectations (Jeremy Thomas, pers.