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Complete Chloroplast Genomes of Three Medicinal Alpinia Species: Genome Organization, Comparative Analyses and Phylogenetic Relationships in Family Zingiberaceae
plants Article Complete Chloroplast Genomes of Three Medicinal Alpinia Species: Genome Organization, Comparative Analyses and Phylogenetic Relationships in Family Zingiberaceae Dong-Mei Li *, Gen-Fa Zhu *, Ye-Chun Xu, Yuan-Jun Ye and Jin-Mei Liu Guangdong Key Lab of Ornamental Plant Germplasm Innovation and Utilization, Environmental Horticulture Research Institute, Guangdong Academy of Agricultural Sciences, Guangzhou 510640, China; [email protected] (Y.-C.X.); [email protected] (Y.-J.Y.); [email protected] (J.-M.L.) * Correspondence: [email protected] (D.-M.L.); [email protected] (G.-F.Z.); Tel.: +86-20-875-93429 (D.-M.L.) Received: 6 February 2020; Accepted: 20 February 2020; Published: 24 February 2020 Abstract: Alpinia katsumadai (A. katsumadai), Alpinia oxyphylla (A. oxyphylla) and Alpinia pumila (A. pumila), which belong to the family Zingiberaceae, exhibit multiple medicinal properties. The chloroplast genome of a non-model plant provides valuable information for species identification and phylogenetic analysis. Here, we sequenced three complete chloroplast genomes of A. katsumadai, A. oxyphylla sampled from Guangdong and A. pumila, and analyzed the published chloroplast genomes of Alpinia zerumbet (A. zerumbet) and A. oxyphylla sampled from Hainan to retrieve useful chloroplast molecular resources for Alpinia. The five Alpinia chloroplast genomes possessed typical quadripartite structures comprising of a large single copy (LSC, 87,248–87,667 bp), a small single copy (SSC, 15,306–18,295 bp) and a pair of inverted repeats (IR, 26,917–29,707 bp). They had similar gene contents, gene orders and GC contents, but were slightly different in the numbers of small sequence repeats (SSRs) and long repeats. -
3Rd INTERNATIONAL WILDLIFE SYMPOSIUM
3rd INTERNATIONAL WILDLIFE SYMPOSIUM “Conserving Sumatran Wildlife Heritage for Sustainable Livelihood” PROCEEDING ISBN: 978-602-0860-13-8 Organized by: RESEARCH AND DEVELOPMENT CENTER OF ENVIRONMENT INSTITUTE FOR RESEARCH AND COMMUNITY SERVICE UNIVERSITY OF LAMPUNG 2016 i PROCEEDING IWS 2016 Person in charge: Warsono, Ph.D. Steering Committee: Dr. Hartoyo, M.Si. Organizing Commettee: Dr. Erdi Suroso, M.T.A. Editors: Dr. Endang Nurcahyani, M.Si. Dr. Ir. Sumaryo Gs, M.Si. Published by: Research and Development Center of Environment Institute for Research and Community Service University of Lampung Jl. Sumantri Brojonegoro No. 1, Bandar Lampung 35145 Phone: +62-721-705173, Fax. +621-721-773798 E-mail: [email protected] ISBN: 978-602-0860-13-8 All right reserved (including those of translation into other languages). No part of this book may be reproduced in any form – by photoprinting, microfilm, or any other means – nor transmitted or translated into a machine language without written permission from the publishers. Registered names, trademarks, etc. Used in this book, even when not specially marked as such, are nor to be considered unpropected by law. ii WELCOMING SPEECH FROM CHAIR PERSON OF THE ORGANIZING COMMITTEE Distinguished guests, - Minister of Environment and Forestry Republic of Indonesia, Dr. Siti Nurbaya or representing, - Rector University of Lampung, Prof. Dr. Ir. Hasriadi Mat Akin, M.P. - Honorable Keynote Speaker, Invited Speakers, participants, sponshorships, ladies and gentlemen Assalamu’alaikum warohmatullohi wabarokatuh. May God bless all of us. Tabik pun. It gives me great pleasure to extend to you all a very warm welcome to the 3rd International Wildlife Symposium (IWS 2016), here in Bandar Lampung. -
Floral Ontogeny in Alpinia Oxyphylla Miq. (Zingiberaceae) and Its Systematic Significance
Gardens’Floral Ontogeny Bulletin in Alpinia Singapore oxyphylla 59 (1&2): 221-230. 2007 221 Floral Ontogeny in Alpinia oxyphylla Miq. (Zingiberaceae) and Its Systematic Significance 1, 2 1 1 * 1 1 J.-J. SONG , P. ZOU , J.-P. LIAO , Y.-J. TANG AND Z.-Y. CHEN 1 South China Botanical Garden, Chinese Academy of Sciences, Guangzhou 510650, China 2 College of life science, Shenzhen University, Shenzhen 518060, China *Corresponding author: [email protected] Abstract Floral organ development of Alpinia oxyphylla Miq. begins with the initiation of sepal primordia, and then the three common primordia comprising petal and inner whorl androecial members. Each common primordium separates into a dorsal petal and a ventral androecial member. The adaxial common primordium begins to separate first to produce the functional stamen and the adaxial petal. Subsequently the two abaxial common primordia separate to form two abaxial inner androecial members and two abaxial petals. After the three common primordia completed their differentiation, three outer androecial members are formed, of which the two adaxial primordia have a slow growth and finally become two lateral staminodes, while the abaxial primordium ceases growth and disappears gradually. The gynoecium is the last floral structure to initiate. Soon after the initiation of gynoecial primordium, the two abaxial inner androecial members form two secondary primordia. Compared to the development of the anther on the fertile stamen, the secondary primordia may be homologous with the primordia of the pollen sacs. This provides new evidence supporting the view that the labellum was derived from the two inner whorled androecial members. Introduction The Zingiberales is a natural order of monocotyledons consisting of eight families, namely, Heliconiaceae, Strelitziaceae, Lowiaceae, Musaceae, Zin- giberaceae, Costaceae, Cannaceae and Marantaceae (Tomlinson, 1982; Dahlgren and Rasmussen, 1983). -
ANNEX B Recommended Planting List for Jurong Lake District
N ANNEX B Recommended Planting List for Jurong Lake District Supports Wildlife Suitable for S/N Species Common Name Habit Conservation status Remarks Small Insects Butterflies Mammals (e.g. Roadsides/ Birds Parks (Bees etc) &/or Moths Bats, Squirrels) Streetscape A rare variety that is not in cultivation. It only grows in 1 Adenia macrophylla var singaporeana - Climber Vulnerable swamp areas in Singapore and Southern Johore. Able to tolerate full sun Scrambling, thorny climber with fragrant flowers; in 2 Oxyceros longiflorus - Climber Vulnerable back mangroves & areas near the sea Clusters of red, lipstick like 3 Aeschynanthus parvifolius Lipstick plant Epiphyte Locally Extinct flowers On trees near the sea and in swamp forests; able to 4 Myrmecodia tuberosa - Epiphyte Locally Extinct tolerate full sun. Attracts ants 5 Amydrium medium - Epiphytic Climber Endangered Previously unknown in cultivation; large plant that 6 Poikilospermum suaveolens - Epiphytic Climber Vulnerable attracts many bird and insect species 7 Bromheadia borneensis - Epiphytic Orchid Locally Extinct Sold as Eria pudica; old 8 Bryobium pudicum - Epiphytic Orchid Locally Extinct mangroves Old mangroves, riversides 9 Bulbophyllum acuminatum - Epiphytic Orchid Locally Extinct and forests 10 Bulbophyllum apodum - Epiphytic Orchid Critically Endangered Sold as Bulbophyllum 11 Bulbophyllum blumei - Epiphytic Orchid Locally Extinct cuspidilingue 12 Bulbophyllum clandestinum - Epiphytic Orchid Locally Extinct 13 Bulbophyllum conccinum - Epiphytic Orchid -
Checklist of the Zingiberaceae of Malesia
Checklist of the Zingiberaceae of Malesia Mark Newman Amélie Lhuillier Axel Dalberg Poulsen BLUMEA Supplement 16 NATIONAAL HERBARIUM NEDERLAND, Universiteit Leiden branch 2004 ISSN 0006-5196 ISBN 90-71236-XX-X BLUMEA Supplement 16 © 2004 Nationaal Herbarium Nederland, Universiteit Leiden branch No part of this publication, apart from bibliographic data and brief quotations in critical reviews, may be reproduced, re-recorded or published in any form, including print, photocopy, microform, electronic or electromagnetic record without written permission. CHECKLIST OF THE ZINGIBERACEAE OF MALESIA MARK NEWMAN1, AMÉLIE LHUILLIER2 & AXEL DALBERG POULSEN3 SUMMARY A checklist of Malesian Zingiberaceae is provided, giving generic names, specific and infraspecific binomials and trinomials, basionyms, synonyms, protologues, type specimens and their locations and limited information on distributions. The revision status of accepted genera and some nomenclatural notes are included. In total 1,661 names are listed. INTRODUCTION This checklist is a precursor to a revision of the Zingiberaceae for Flora Malesiana (FM). It appears very nearly a century after the last monograph of the family (Schu- mann, 1904). During this time generic limits in the family have changed greatly and many new species have been described, while the forests in Malesia have declined catastrophically. There have been revisions of the Zingiberaceae for certain areas within Malesia, notably Holttumʼs Zingiberaceae of the Malay Peninsula (Holttum, 1950) and Smithʼs Review of Bornean Zingiberaceae (Smith, 1985, 1986, 1987, 1988, 1989). However, for large areas of Malesia, including Sumatra, the Philippines and all of eastern Malesia, there is still only a scattering of old papers in a number of European languages. -
The Complete Chloroplast Genome Sequence of Alpinia Oxyphylla Miq
RESEARCH ARTICLE The complete chloroplast genome sequence of Alpinia oxyphylla Miq. and comparison analysis within the Zingiberaceae family 1,2 2 3 2 2 1,2 Bingmiao GaoID , Lin Yuan , Tianle Tang , Jie Hou , Kun Pan *, Na Wei * 1 Hainan Provincial Key Laboratory of R&D on Tropical Herbs, Hainan Medical University, Haikou, China, 2 School of Pharmacy, Hainan Medical University, Haikou, China, 3 Environmental Science, School of Tropical and Laboratory Medicine, Hainan Medical University, Haikou, China * [email protected] (KP); [email protected] (NW) a1111111111 a1111111111 a1111111111 a1111111111 Abstract a1111111111 Alpinia oxyphylla Miq. (A. oxyphylla) is an important edible and traditional herbal medicine. In this study, the complete chloroplast genome of A. oxyphylla was sequenced, analysed, and compared to five species in the Zingiberaceae family. The size of the A. oxyphylla chlo- roplast genome was 161351 bp, which consisted of a large single-copy (LSC, 87248 bp) OPEN ACCESS and small single-copy (SSC, 16175 bp) region separated by a pair of inverted repeats (IRa Citation: Gao B, Yuan L, Tang T, Hou J, Pan K, Wei and IRb, 28964 bp each). The genome encoded 132 unique genes, including 87 protein- N (2019) The complete chloroplast genome coding genes, 37 tRNAs and four rRNAs. The GC content of the genome was 36.17%. A sequence of Alpinia oxyphylla Miq. and comparison analysis within the Zingiberaceae family. PLoS ONE total of 53 simple sequence repeats (SSRs) and 80 long repeats were identified in the A. 14(6): e0218817. https://doi.org/10.1371/journal. oxyphylla chloroplast genome. The chloroplast genome of A. -
Chapter 1: Introductio
CHAPTER 1 INTRODUCTION Alpinia is a genus of over 250 species belonging to the family Zingiberaceae (Larsen et al.,1999). Most members of the genus are found in subtropical and tropical rain forests of Asia, Australia and Pacific Islands (Wu and Larsen, 2000; Smith, 1990). Some members of the genus are well known for ethnomedicinal importance, for example Alpinia mutica and Alpinia nutans while some are also utilised as spices, for example, Alpinia galanga (Larsen et al., 1999; Valkenburg and Bunyapraphatsara, 2001). Many botanists have described and recorded Alpinia species notably Roxburgh (1810), Schumann (1904), Ridley (1924), Holttum (1950) and Smith (1990). Currently, botanists refer to Smith’s (1990) infrageneric classification. In recent years, several researchers used molecular data to explore phylogenetic relationships within the genus Alpinia (Rangsiruji et al., 2000a; b and Kress et al., 2002; 2005a). However, neither the results of Rangsiruji et al. (2000a; b) nor Kress et al. (2005a) supported the classification of Alpinia proposed by Smith (1990). The phylogenetic analysis of Malaysian Alpinia is unsatisfactory because only two species from Malaysia were studied by Rangsiruji et al. (2000 a; b) and Kress et al. (2005a) namely Alpinia javanica and Alpinia rafflesiana although 25 species had been previously recorded in Peninsular Malaysia (Holtumm, 1950 and Lim, 2004; 2007). The Peninsular Malaysian Alpinia species were grouped under Smith’s 1990 section Alpinia (subsection Catimbium, Alpinia, Presleia and Cenolophon) and section Allughas (subsection Strobidia, Odontychium and Allughas) in Fig. 1.1. 1 Figure 1.1 Infrageneric classification of Alpinia adapted from Smith (1990). Insert shows Peninsular Malaysian species recorded by Holttum (1950). -
Antityrosinase Inhibitory Activity of Phytochemicals from Alpinia Aquatica Roscoe
Pharmaceutical Sciences, 2020, 26(2), 209-213 doi:10.34172/PS.2020.6 https://ps.tbzmed.ac.ir/ Short Communication Antityrosinase Inhibitory Activity of Phytochemicals from Alpinia aquatica Roscoe Nissha Bharrathi Romes1 , Wan Mohd Nuzul Hakimi Wan Salleh2* , Hasnah Mohd. Sirat1* , Zaini Assim3 1Department of Chemistry, Faculty of Science, Universiti Teknologi Malaysia (UTM), 81310 Johor Bahru, Johor, Malaysia. 2Department of Chemistry, Faculty of Science and Mathematics, Universiti Pendidikan Sultan Idris (UPSI), 35900 Tanjong Malim, Perak, Malaysia. 3Faculty of Resource Science and Technology, Universiti Malaysia Sarawak, Kota Samarahan, 93400 Kuching, Sarawak, Malaysia. Article Info Abstract Background: Genus Alpinia are commonly used as spices and ingredients in traditional Article History: medicines. In the present study, we attempted to isolate the phytochemicals from Alpinia Received: 15 November 2019 Accepted: 29 December 2019 aquatica and evaluate their tyrosinase inhibitory activity. ePublished: 27 June 2020 Methods: Phytochemical constituents of the extract were investigated using various chromatographic and spectroscopic methods. The chemical structures of the isolated Keywords: phytochemicals were established by analysis of their spectroscopic data, as compared to that -Zingiberaceae of reported data. Tyrosinase inhibitory activity was also tested on the extracts and selected -Alpinia aquatica compounds using mushroom tyrosinase as the enzyme. -Tyrosinase Results: Fractionation and purification of the extracts of Alpinia aquatica afforded seven known -Flavonoid compounds which are 5-hydroxy-3,7,4’-trimethoxyflavone 1( ), 4’,5-dihydroxy-3,7-dimethoxy- -Phytochemical flavone (2), 2-methoxy-8-(2’,4’,5’-trimethoxyphenyl)-1,4-naphthaquinone (3), cis-3S-(2’,4’,5’-tri- methoxyphenyl)-4S-[(E)-2’’’,4’’’,5’’’-trimethoxystyryl]cyclohexene (4), 2,4,5-trimethoxybenz- aldehyde (5), stigmasterol (6) and β-sitosterol (7). -
Therapeutic Potential of Zingiberaceae in Alzheimer's Disease
MS Editions BOLETIN LATINOAMERICANO Y DEL CARIBE DE PLANTAS MEDICINALES Y AROMÁTICAS 19 (5): 428 - 465 (2020) © / ISSN 0717 7917 / www.blacpma.ms-editions.cl Revisión / Review Therapeutic potential of Zingiberaceae in Alzheimer's disease [Potencial terapéutico de Zingiberaceae en la enfermedad de Alzheimer] Wanessa de Campos Bortolucci1, Jéssica Rezende Trettel2, Danilo Magnani Bernardi3, Marília Moraes Queiroz Souza3, Ana Daniela Lopes4, Evellyn Claudia Wietzikoski Lovato5, Francislaine Aparecida dos Reis Lívero3,6, Glacy Jaqueline da Silva4, Hélida Mara Magalhães2, Silvia Graciela Hülse de Souza2, Zilda Cristiani Gazim1 & Nelson Barros Colauto4 1Graduate Program in Biotechnology Applied to Agriculture, Universidade Paranaense, Umuarama, PR, Brazil 2Graduate Program in Biotechnology Applied to Agriculture, Universidade Paranaense, Umuarama, PR, Brazil 3Graduate Program in Medicinal Plants and Phytotherapeutics in Basic Attention, Universidade Paranaense, Umuarama, Brazil 4Graduate Program in Biotechnology Applied to Agriculture, Universidade Paranaense, Umuarama, PR, Brazil 5Graduate Program in Medicinal Plants and Phytotherapics in Basic Attention, Universidade Paranaense, Umuarama, PR, Brazil 6Graduate Program in Animal Science with Emphasis on Bioactive Products, Universidade Paranaense, Umuarama, PR, Brazil Contactos | Contacts: Glacy Jaqueline DA SILVA - E-mail address: [email protected] Abstract: Alzheimer's disease is the most common form of dementia and is highly prevalent in old age. Unlike current drugs, medicinal plants can have preventive and protective effects with less side effects. Given the great number of bioactive substances, plants from the Zingiberaceae Family have medicinal potential and currently are widely studied regarding its anti-Alzheimer's disease effects. The objective of this study was to provide an overview of advances in phytochemical composition studies, in vitro and in vivo pharmacological studies, and toxicological effects of the Zingiberaceae Family on Alzheimer's disease. -
Chapter 3: Results
CHAPTER 3 RESULTS 3.1 Specimen collection A total of 72 taxa were collected and identified to species level. In general, 21 species including a recently described species by Lim, CK (2007), Alpinia suriana, were recorded. Specimens which were successfully identified to species level were Alpinia aquatica, Alpinia capitellata, Alpinia cf. assimilis, Alpinia conchigera, Alpinia galanga, Alpinia javanica, Alpinia javanica var. colorata, Alpinia latilabris, Alpinia macrostephana, Alpinia malaccensis var. nobilis, Alpinia murdochii, Alpinia mutica, Alpinia oxymitra, Alpinia pahangensis, Alpinia petiolata, Alpinia rafflesiana, Alpinia scabra, Alpinia suriana, Alpinia vitellina, Alpinia vitellina var. cannifolia and Alpinia zerumbet. Generally all Alpinia species collection belongs under section Alpinia or section Allughas (in accordance to Smith’s classification, Smith 1990). 32 Table 3.1 List of species collected Collection Specimen Type of Forest/ Species (n) Location/Coordinates date ID Topography A. aquatica 19/6/2008 N9 Rimba Ilmu, UM (Kuala Conservatory/ (Retz.) Roscoe Lumpur) Lowland (3) 10/11/2010 N149 Hutan Simpan Menchali, Secondary forest Rompin (Pahang) (disturbed)/ Lowland 19/6/2008 N263 Rimba Ilmu, UM (Kuala Conservatory / Lumpur) Lowland A. capitellata 5/2/2012 N200 Suriana Gardens, Balik Conservatory / Jack. (3) Pulau (Penang) Lowland 5/2/2012 N201 Suriana Gardens, Balik Conservatory / Pulau (Penang) Lowland 5/2/2012 N202 Suriana Gardens, Balik Conservatory / Pulau (Penang) Lowland A. cf. assimilis 3/8/2009 N140 Suriana Gardens, Balik Conservatory / Ridl. (3) Pulau (Penang) Lowland 3/8/2009 N230 Suriana Gardens, Balik Conservatory / Pulau (Penang) Lowland 3/8/2009 N231 Suriana Gardens, Balik Conservatory / Pulau (Penang) Lowland A. conchigera 19/6/2008 N3 Rimba Ilmu, UM (Kuala Conservatory / Griff. -
Tropical Biology & C O N S E R V at I
j o u r n a l o f Vol. 15/2018 TROPICAL BIOLOGY & C O N S E R V A T I O N ISSN 1823-3902 E-ISSN 2550-1909 A JOURNAL OF THE INSTITUTE FOR TROPICAL BIOLOGY AND CONSERVATION UNIVERSITI MALAYSIA SABAH Journal of TROPICAL BIOLOGY & CONSERVATION A journal of the Institute for Tropical Biology and Conservation, Universiti Malaysia Sabah Editor-in-chief Dr. Abdul Hamid Ahmad (Assoc. Prof., Universiti Malaysia Sabah, Malaysia) Managing Editor Dr. Jaya Seelan Sathiya Seelan (Universiti Malaysia Sabah, Malaysia) Editorial Assistant Julia George Kunai (Universiti Malaysia Sabah, Malaysia) Editorial Board Dr. Henry Bernard (Assoc. Prof., Universiti Malaysia Sabah, Malaysia) Dr. Holger Thus (Natural History Museum, London) Dr. Homathevi Rahman (Assoc. Prof., Universiti Malaysia Sabah, Malaysia) Dr. Menno Schilthuizen (Prof., Leiden University, the Netherlands) Dr. Mohd. Tajuddin Abdullah (Prof., Universiti Malaysia Terengganu, Malaysia) Dr. Monica Suleiman (Assoc. Prof., Universiti Malaysia Sabah, Malaysia) Dr. Shigeki Matsunaga (Prof., the University of Tokyo, Japan) Reviewers Dr. Arthur Y.C. Chung Dr. Noor Haliza Hasan @ Ahmad (Forest Research Centre, Sabah, Malaysia) (Universiti Malaysia Sabah, Malaysia) Dr. Bruce Prideaux Dr. Norazah Mohd Suki (Prof.,Central Queensland University, Australia) (Assoc. Prof., Universiti Malaysia Sabah, Malaysia) Dr. Chua Tock Hing Dr. Paul Woodcock (Prof., Universiti Malaysia Sabah, Malaysia) (University of Leeds, United Kingdom) Dr. Chye Fook Yee Dr. Rita Megia (Prof., Universiti Malaysia Sabah, Malaysia) (Bogor Agricultural University Bogor, Indonesia) Dr. Faisal Ali Bin Anwarali Khan Dr. Ruth Kiew (Universiti Malaysia Sarawak, Malaysia) (Forest Research Institute Malaysia, Malaysia) Dr. Fiffy Hanisdah Saikim Dr. Steve Yanoviak (Universiti Malaysia Sabah, Malaysia) (Assoc. -
Genetic Structure and Relationships Within and Between Cultivated and Wild Korarima [Aframomum Corrorima (Braun) P.C.M
Chombe et al. BMC Genetics (2017) 18:72 DOI 10.1186/s12863-017-0540-4 RESEARCH ARTICLE Open Access Genetic structure and relationships within and between cultivated and wild korarima [Aframomum corrorima (Braun) P.C.M. Jansen] in Ethiopia as revealed by simple sequence repeat (SSR) markers Dagmawit Chombe1* , Endashaw Bekele1, Tomas Bryngelsson2, Abel Teshome2 and Mulatu Geleta2 Abstract Background: Korarima [Aframomum corrorima (Braun) P.C.M. Jansen] is a spice crop native to Ethiopia. Understanding the extent and partitioning of diversity within and among crop landraces and their wild relatives is among the first steps in conserving and measuring their genetic potential. The present study is aimed at characterizing the population genetic structure and relationships between cultivated and wild korarima in the southwestern part of Ethiopia. Results: We analyzed a total of 195 individuals representing seven wild and fourteen cultivated populations. Eleven polymorphic simple sequence repeat (SSR) markers were used. We observed a total of 53 alleles across the eleven loci and individuals. In total, 32 alleles were detected in the cultivated populations, whereas 49 alleles were detected in the wild populations. We found higher genetic diversity in wild populations than in the cultivated counterpart. This result implies the potential of wild korarima as a possible source for novel alleles contributing to the improvement of cultivated korarima. Analysis of molecular variance (AMOVA) showed significant but low differentiation between cultivated and wild korarima populations. Similarly, neighbour-joining and STRUCTURE analyses did not group cultivated and wild populations into two distinct clusters. The lack of clear differentiation between cultivated and wild populations could be explained by historical and contemporary gene flow between the two gene pools.