Chr2 Coming of Age
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
From Channelrhodopsins to Optogenetics ACCESS
Perspective OPEN From channelrhodopsins to optogenetics ACCESS From channelrhodopsins to optogenetics We did not expect that research on the and identified the role of Ca2þ influx in forming a single protein complex (Braun molecular mechanism of algal phototaxis flagellar beat frequency changes (Halldal, & Hegemann, 1999). or archaeal light-driven ion transport 1957, Schmidt & Eckert, 1976). Then Oleg In parallel, biophysicists had character- might interest readers of a medical Sineshchekov from Moscow State Uni- ized the precise nature of light-regulated journal when we conceived and per- versity recorded electrical light responses ion transport across cellular membranes. formed our experiments a decade ago. On from Haematococcus pluvialis, an alga Some of these studies started with the other hand, it did not escape our known for the production of the anti- investigations on animal rhodopsin and attention that channelrhodopsin is helping oxidant Astaxanthine (Litvin et al, 1978). even suggested rhodopsin-mediated an ever-increasing number of researchers Oleg used a suction pipette technique light-induced calcium entry with rhodop- to address their specific questions. For applied at the time by Dennis Baylor for sin itself as the carrier for calcium (Cone, example, the channelrhodopsin approach recording photocurrents from bovine 1972). Several decades later, we know is used to study the molecular events photoreceptor rods and cones. But Oleg’s that animal-type rhodopsins are G pro- during the induction of synaptic plasticity publication gave no hints about the type tein-coupled receptors indirectly modu- or to map long-range connections from of photoreceptor involved. Kenneth W. lating ion channel activity via signalling one side of the brain to the other, and to Foster however, a physicist at Mount molecules. -
Optogenetics: Using Light to Control the Brain by Edward S. Boyden, Ph.D
Optogenetics: Using Light to Control the Brain By Edward S. Boyden, Ph.D. Courtesy of the MIT McGovern Institute, Julie Pryor, Charles Jennings, Sputnik Animation, and Ed Boyden. Editor’s note: The brain is densely packed with interconnected neurons, but until about six years ago, it was difficult for researchers to isolate neurons and neuron types to determine their individual roles in brain processes. In 2004 however, scientists, including author Edward S. Boyden, Ph.D., found that the neural expression of a protein, channelrhodopsin-2 (ChR2), allowed light to activate or silence brain cells. This technology, now known as optogenetics, is helping scientists determine the functions of specific neurons in the brain, and could play a significant role in treating medical issues as diverse as sleep disorders and vision impairment. Article available online at http://dana.org/news/cerebrum/detail.aspx?id=34614 1 The brain is an incredibly densely wired computational circuit, made out of an enormous number of interconnected cells called neurons, which compute using electrical signals. These neurons are heterogeneous, falling into many different classes that vary in their shapes, molecular compositions, wiring patterns, and the ways in which they change in disease states. It is difficult to analyze how these different classes of neurons work together in the intact brain to mediate the complex computations that support sensations, emotions, decisions, and movements—and how flaws in specific neuron classes result in brain disorders. Ideally, one would study the brain using a technology that would enable the control of the electrical activity of just one type of neuron, embedded within a neural circuit, in order to determine the role that that type of neuron plays in the computations and functions of the brain. -
On the Technology Prospects and Investment Opportunities for Scalable Neuroscience
On the Technology Prospects and Investment Opportunities for Scalable Neuroscience Thomas Dean1,2,3 Biafra Ahanonu3 Mainak Chowdhury3 Anjali Datta3 Andre Esteva3 Daniel Eth3 Nobie Redmon3 Oleg Rumyantsev3 Ysis Tarter3 1 Google Research, 2 Brown University, 3 Stanford University Contents 1 Executive Summary 1 2 Introduction 4 3 Evolving Imaging Technologies 6 4 Macroscale Reporting Devices 10 5 Automating Systems Neuroscience 14 6 Synthetic Neurobiology 16 7 Nanotechnology 20 8 Acknowledgements 28 A Leveraging Sequencing for Recording — Biafra Ahanonu 28 B Scalable Analytics and Data Mining — Mainak Chowdhury 32 C Macroscale Imaging Technologies — Anjali Datta 35 D Nanoscale Recording and Wireless Readout — Andre Esteva 38 E Hybrid Biological and Nanotechnology Solutions — Daniel Eth 41 F Advances in Contrast Agents and Tissue Preparation — Nobie Redmon 44 G Microendoscopy and Optically Coupled Implants — Oleg Rumyantsev 46 H Opportunities for Automating Laboratory Procedures — Ysis Tarter 49 i 1 Executive Summary Two major initiatives to accelerate research in the brain sciences have focused attention on devel- oping a new generation of scientific instruments for neuroscience. These instruments will be used to record static (structural) and dynamic (behavioral) information at unprecedented spatial and temporal resolution and report out that information in a form suitable for computational analysis. We distinguish between recording — taking measurements of individual cells and the extracellu- lar matrix — and reporting — transcoding, packaging and transmitting the resulting information for subsequent analysis — as these represent very different challenges as we scale the relevant technologies to support simultaneously tracking the many neurons that comprise neural circuits of interest. We investigate a diverse set of technologies with the purpose of anticipating their devel- opment over the span of the next 10 years and categorizing their impact in terms of short-term [1-2 years], medium-term [2-5 years] and longer-term [5-10 years] deliverables. -
Coherent Control of Optogenetic Switching by Stimulated Depletion
Coherent Control of Optogenetic Switching by Stimulated Depletion Quenching Zachary Quine1, Alexei Goun1, Karl Gerhardt, 2, Jeffrey Tabor2, Herschel Rabitz1 1Department of Chemistry, Princeton University 2Department of Bioengineering, Rice University October 29, 2018 Abstract Optogenetics is a revolutionary new field of biotechnology, achieving optical control over biological functions in living cells by genetically inserting light sensitive proteins into cellular signaling pathways. Applications of optogenetic switches are expanding rapidly, but the technique is hampered by spectral cross-talk: the broad absorption spectra of compatible biochemical chromophores limits the number of switches that can be independently controlled and restricts the dynamic range of each switch. In the present work we develop and implement a non-linear optical photoswitching capability, Stimulated Depletion Quenching (SDQ), is used to overcome spectral cross-talk by exploiting the molecules' unique dynamic response to ultrashort laser pulses. SDQ is employed to enhance the control of Cph8, a photo- reversible phytochrome based optogenetic switch designed to control gene expression in E. Coli bacteria. The Cph8 switch can not be fully converted to it's biologically inactive state (PFR) by linear photos- witching, as spectral cross-talk causes a reverse photoswitching reaction to revert to it back to the active state (PR). SDQ selectively halts this reverse reaction while allowing the forward reaction to proceed. arXiv:1810.11432v1 [q-bio.QM] 26 Oct 2018 The -
Chronic Neurovascular Dysfunction in a Preclinical Model of Repeated Mild Traumatic Brain Injury
Chronic Neurovascular Dysfunction in a Preclinical Model of Repeated Mild Traumatic Brain Injury by Conner Adams A thesis submitted in conformity with the requirements for the degree of Master of Science Department of Medical Biophysics University of Toronto © Copyright by Conner Adams 2018 Chronic Neurovascular Dysfunction in a Preclinical Model of Repeated Mild Traumatic Brain Injury Conner Adams Master of Science Department of Medical Biophysics University of Toronto 2018 Abstract: Outcomes associated with repeated mild traumatic brain injury (mTBI) are considerably worse than those of a single mTBI. Despite higher prevalence relative to moderate injuries, the repeated mTBI’s pathological progression has been understudied. For moderate-to-severe TBI, metabolic mismatch has been identified as a key component in pathological progression, and hence amenable to therapeutic targeting. Here, I present a mouse model of repeated mTBI induced via three controlled cortical impacts delivered at three day intervals for purpose of probing the aspects of the neurovascular coupling in chronic repeated mTBI in Thy1-ChR2 mice. Resting cerebral blood flow and cerebrovascular reactivity were investigated via arterial spin labelling MRI, and intracranial electrophysiological measurements of evoked neuronal responses to optogenetic photostimulation were performed. Immunohistochemistry revealed alterations in vascular organization and astrocyte reactivity. This work provided the first insights into the neurophysiological alterations post repeated mTBI and enables new understanding of the associated cerebrovascular deficits. ii Acknowledgements I would like to thank Bojana for demonstrating true leadership throughout my time in the lab. As my supervisor, she taught me a great deal about science and enforced the importance of character and dedication in all facets of life. -
CV Ernst Bamberg
Curriculum Vitae Prof. Dr. Ernst Bamberg Name: Ernst Bamberg Geboren: 9. November 1940 Forschungsschwerpunkte: Channelrhodopsin (Transportproteine), lichtgesteuerte Ionen, Informationsübertragung zwischen Nervenzellen, Optogenetik Ernst Bamberg ist Biophysiker. Gemeinsam mit Georg Nagel und Peter Hegemann entdeckte er die Channelrhodopsine (ChR1, 2). Ihre Anwendung als Licht-gesteuerte Kationenkanäle hat zu der inzwischen weltweit eingesetzten Methode der Optogenetik geführt. Akademischer und beruflicher Werdegang seit 1993 Direktor der Abteilung Biophysikalische Chemie am Max-Planck-Institut für Biophysik, Frankfurt/Main 1993 - 2009 C4-Professor für Biophysikalische Chemie an der Universität Frankfurt/Main 1983 Leiter einer Arbeitsgruppe am Max-Planck-Institut für Biophysik, Frankfurt/Main 1979 - 1983 Heisenberg-Stipendiat der Deutschen Forschungsgemeinschaft 1977 Habilitation mit einem biophysikalischen Thema zur Ionenpermeabilität und zur Kinetik von Peptidionenkanälen, Universität Konstanz seit 1971 Mitarbeiter der Universität Konstanz 1971 Promotion mit Untersuchungen zum Ionentransport an künstlichen Lipidmembranen, Universität Basel, Schweiz Studium der Physikalischen Chemie an der Universität Basel, Schweiz Auszeichnungen und verliehene Mitgliedschaften 2019 Rumford-Preis der Academy of Arts and Sciences Nationale Akademie der Wissenschaften Leopoldina www.leopoldina.org 1 2013 The Brain Prize, Grete Lundbeck European Brain Research Foundation 2012 K. J. Zülch-Preis der Gertrud Reemtsma-Stiftung seit 2011 Mitglied der Nationalen -
CV Peter Hegemann
Curriculum Vitae Prof. Dr. Peter Hegemann Name: Peter Hegemann Geboren: 11. Dezember 1954 Forschungsschwerpunkte: Kanalrhodopsine, Optogenetik, neuronale Netzwerke, Photobiologie der Grünalge (Chlamydomonas reinhardtii), Photorezeptoren Peter Hegemann ist Biophysiker. Schwerpunkt seiner Arbeit ist die Algenforschung. Er analysiert sensorische Photorezeptoren aus Mikroalgen und gilt als einer der Entdecker der Kanalrhodopsine. Diese lichtempfindlichen Proteine sind die Grundlage für das Wissenschaftsgebiet der Optogenetik, das Peter Hegemann mitbegründet hat. Die Optogenetik ermöglicht neuartige Untersuchungen von neuronalen Netzwerken. Akademischer und beruflicher Werdegang seit 2015 Hertie-Senior-Forschungsprofessur Neurowissenschaften, Hertie-Stiftung seit 2012 Gastwissenschaftler am Howard Hughes Medical Institute, Janelia Farm, Ashburn, USA seit 2005 Professor für experimentelle Biophysik an der Humboldt-Universität zu Berlin 1993 - 2004 Professor für Biochemie an der Universität Regensburg 1992 Habilitation an der Ludwig-Maximilians-Universität München 1986 - 1992 Forschungsgruppenleiter am Max-Planck-Institut für Biochemie in Martinsried 1985 - 1986 Forschungsaufenthalt am Physics Department der Universität Syracuse, USA 1984 Promotion am Max-Planck-Institut für Biochemie in Martinsried 1980 Diplom im Fach Biochemie 1975 - 1980 Studium der Chemie, Westfälische Wilhelms-Universität Münster und Ludwig- Maximilians-Universität München Nationale Akademie der Wissenschaften Leopoldina www.leopoldina.org 1 Funktionen in wissenschaftlichen -
Optogenetics Makes Sterile Mice Fertile Again 20 January 2015
Optogenetics makes sterile mice fertile again 20 January 2015 Hegemann, Ernst Bamberg, and Georg Nagel – proved that the light-sensitive membrane proteins of a unicellular green alga are ion channels and dubbed them channelrhodopsins. Channelrhodopsins can be inserted into cells by genetic engineering methods, making it possible to control cells with light. This discovery established a new research field, known as optogenetics. Optogenetics has been mainly used to control the electrical activity of nerve cells containing channelrhodopsin by light. Meanwhile, the Light stimulation restores flagellar beating. Flagellar optogenetic "toolbox" has been enlarged so that it waveform of sperm lacking the function SACY enzyme, is now possible to switch messenger-mediated but containing the light-activated bPAC, before (left) and signalling pathways in cells on and off. An after stimulation with blue light (right). Successive, important cellular messenger is cyclic AMP (cAMP), aligned, and superimposed images creating a which controls a wide range of functions such as “stop?motion” image, illustrating one flagellar beating heart rate, the sense of smell, learning, memory cycle. Scale bar: 30 µm. formation, and the fertilisation of eggs. This substance is synthesised by enzymes known as adenylate cyclases. Scientists from the Center of Advanced European In 2002, the first light-activated adenylate cyclase Studies and Research (caesar) in Bonn, an (PAC, for photo-activated adenylate cyclase) was Institute of the Max Planck Society, have discovered. Since then, researchers have succeeded for the first time in controlling the encountered more such enzymes. One of the latest function of sperm by optogenetics. They inserted a prominent examples is bPAC, a light-gated light-activated enzyme for cAMP synthesis into adenylate cyclase from soil bacteria, which was mouse sperm that lacked the endogenous identified by Peter Hegemann at the Humboldt enzyme. -
Optogenetics: 10 Years After Chr2 in Neurons—Views from the Community
Q&A Optogenetics: 10 years after ChR2 in neurons—views from the community Antoine Adamantidis, Silvia Arber, Jaideep S Bains, Ernst Bamberg, Antonello Bonci, György Buzsáki, Jessica A Cardin, Rui M Costa, Yang Dan, Yukiko Goda, Ann M Graybiel, Michael Häusser, Peter Hegemann, John R Huguenard, Thomas R Insel, Patricia H Janak, Daniel Johnston, Sheena A Josselyn, Christof Koch, Anatol C Kreitzer, Christian Lüscher, Robert C Malenka, Gero Miesenböck, Georg Nagel, Botond Roska, Mark J Schnitzer, Krishna V Shenoy, Ivan Soltesz, Scott M Sternson, Richard W Tsien, Roger Y Tsien, Gina G Turrigiano, Kay M Tye & Rachel I Wilson On the anniversary of the Boyden et al. (2005) paper that introduced the use of channelrhodopsin in neurons, Nature Neuroscience asks selected members of the community to comment on the utility, impact and future of this important technique. euroscientists have long dreamed of and applied to a vast array of questions both in technique has had on neuroscience, we were Nthe ability to control neuronal activ- neuroscience and beyond. curious to know how researchers in the field ity with exquisite spatiotemporal precision. In the intervening years, improvements to feel the advances in optogenetic approaches In this issue, we celebrate the tenth anniver- early techniques have provided the community have influenced their work, what they think sary of a paper published in the September with an optogenetics tool box that has opened the future holds in terms of the application 2005 issue of Nature Neuroscience by a team the door to experiments we could have once of these techniques and what they see as the Nature America, Inc. -
The Shaw Laureates (2004 – 2021)
The Shaw Laureates (2004 – 2021) YEAR Astronomy Life Science and Medicine Mathematical Sciences YEAR Astronomy Life Science and Medicine Mathematical Sciences David C Jewitt (USA) Franz-Ulrich Hartl (Germany) Two prizes awarded: 2012 Maxim Kontsevich (France) Jane Luu (USA) Arthur L Horwich (USA) (1) Stanley N Cohen (USA) 2004 P James E Peebles (USA) Herbert W Boyer (USA) Shiing-Shen Chern (China) Jeffrey C Hall (USA) Yuet-Wai Kan (USA) Steven A Balbus (UK) 2013 Michael Rosbash (USA) David L Donoho (USA) (2) Richard Doll (UK) John F Hawley (USA) Michael W Young (USA) Daniel Eisenstein (USA) Geoffrey Marcy (USA) Kazutoshi Mori (Japan) 2005 Michael Berridge (UK) Andrew John Wiles (UK) 2014 Shaun Cole (UK) George Lusztig (USA) Michel Mayor (Switzerland) Peter Walter (USA) John A Peacock (UK) Saul Perlmutter (USA) Bonnie L Bassler (USA) Gerd Faltings (Germany) David Mumford (USA) 2015 William J Borucki (USA) Adam Riess (USA) Xiaodong Wang (USA) E Peter Greenberg (USA) Henryk Iwaniec (USA) 2006 Wentsun Wu (China) Brian Schmidt (Australia) Ronald W P Drever (UK) Adrian P Bird (UK) 2016 Kip S Thorne (USA) Nigel J Hitchin (UK) Robert Langlands (USA) Huda Y Zoghbi (USA) 2007 Peter Goldreich (USA) Robert Lefkowitz (USA) Rainer Weiss (USA) Richard Taylor (UK) Ian R Gibbons (USA) János Kollár (USA) Ian Wilmut (UK) 2017 Simon D M White (Germany) Vladimir Arnold (Russia) Ronald D Vale (USA) Claire Voisin (France) 2008 Reinhard Genzel (Germany) Keith H S Campbell (UK) Ludwig Faddeev (Russia) Shinya Yamanaka (Japan) 2018 Jean-Loup Puget (France) Mary-Claire -
Acknowledgment of Reviewers, 2017
Acknowledgment of Reviewers, 2017 The PNAS editors would like to thank all the individuals who dedicated their considerable time and expertise to the journal by serving as reviewers in 2017. Their generous contribution is deeply appreciated. A Katarzyna P. Adamala Hiroji Aiba Christine Alewine Jean Alric Hillie Aaldering Andrew Adamatzky Erez Lieberman Aiden Caroline M. Alexander Eben Alsberg Lauri A. Aaltonen Jozef Adamcik Allison E. Aiello R. Todd Alexander Manfred Alsheimer Duur K. Aanen Igor Adameyko Iannis Aifantis Alfredo Alexander-Katz Grégoire Altan-Bonnet Matthew L. Aardema Vic Adamowicz Christopher Aiken Anastassia N. Lee Altenberg Dirk G. A. L. Aarts David J. Adams Roger D. Aines Alexandrova Galit Alter Adam R. Abate David J. Adams Tracy D. Ainsworth Frank Alexis Orly Alter Cory Abate-Shen Jonathan Adams Edoardo Airoldi Emil Alexov Florian Altermatt Peter Abbamonte Michael E. Adams Jacqueline Michael Alfaro Marcus Altfeld Abul K. Abbas Patti Adank Aitkenhead-Peterson Hashim M. Al-Hashimi Dario C. Altieri Emmanuel A. Abbe R. Alison Adcock Slimane Ait-Si-Ali Asfar Ali Katye E. Altieri Shahal Abbo Zach N. Adelman Joanna Aizenberg Nageeb Ali Amnon Altman David H. Abbott Robert S. Adelstein Javier Aizpurua Robin R. Ali John D. Altman Geoffrey W. Abbott Andrew Adey Jaffer A. Ajani Saleem H. Ali Steven Altschuler Nicholas L. Abbott W. Neil Adger Caroline M. Ajo-Franklin Karen Alim Andrea Alu Omar Abdel-Wahab Jess F. Adkins Myles Akabas Michael T. Alkire Veronica A. Alvarez Ibrokhim Y. Ralph Adolphs Michael Akam Suvarna Alladi Javier Álvarez Abdurakhmonov Markus Aebi Omar S. Akbari Frédéric H.-T. Allain Arturo Alvarez-Buylla Ikuro Abe Yehuda Afek Erol Akcay David Alland David Amabilino Junichi Abe Hagit P. -
Optogenetics and Its Influence on the Clinical Neurosciences
Journal, Vol. XXI, No. 1, 1-5, 2017 Cambridge Medicine Journal, 1-6, 2021 http://doi.dx.10.7244/cmj.2017.03.002http://doi.dx.10.7244/cmj.2020.12.002 Potential Applications of Three-dimensional Optogenetics and its influence on the clinical neurosciencesBioprinting in Regenerative Medicine Mateusz Gotowiec*1 Dominic Kwan 1UCL Medical School *Correspondence to: Mateusz Gotowiec, [email protected] In 1979, Francis Crick proposed an innovative solution: 1. Optogenetics – the basics of its action the use of light to control neurons [1]. His idea, combined with the prolonged effort of various scientists, resulted in Optogenetics is a unique domain in the complex of experi- a revolutionary technique – optogenetics - being chosen mental and therapeutic approaches in the field of neurobiol- DOI: 10.7244/cmj.2017.03.002 in 2010 as the "Method of the Year" across all branches ogy because it creates a possibility for the manipulation of of science and engineering [2, 3]. The first optogenetic normal and pathological neuronal networks, which cannot experiments commenced in 2005, however, it took several be achieved using any other techniques.Potential The underlying applications of three-dimensional years until this novel method began to be used in clinical idea behind this biological technique is the control of neu- neuroscience. In 2013, the European Brain Research Prize rons using light, primarily with photosensitive channels was awarded to Ernst Bamberg, Edward Boyden, Karl or pumps [6] which by changing ionic concentrationsbioprinting can in Regenerative Medicine Deisseroth, Peter Hegemann, Gero Miesenbock,¨ and Georg depolarise or hyperpolarise the whole cell. The aforemen- Nagel for their ‘invention and refinement of optogenetics’ tioned neuronal control is achieved through optogenetic ac- [4].