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One Health Ejp Annual Scientific Meeting 2020 ONE HEALTH EJP ANNUAL SCIENTIFIC MEETING 2020 ONLINE MEETING, MAY 27TH - 29TH, 2020 PROCEEDINGS of the 2nd Annual Scientific Meeting of the One Health European Joint Programme on Foodborne Zoonoses, Antimicrobial Resistance and Emerging Threats OHEJP ASM 2020 Abstracts book Dear colleagues and friends, It was a great pleasure for the National Institute of Public Health and the Veterinary Research Institute to get the responsibility to organise the 2nd Annual Scientific Meeting of the One Health European Joint Programme (OHEJP) on Foodborne Zoonoses, Antimicrobial Resistance and Emerging threats, in Prague, the Czech Repub- lic, 27-29 May 2020. Unfortunately the COVID-19 pandemic crossed our plans and we had to cancel the planned face to face ren- dez-vous of the already registered high number of participants from all over the Europe and around the globe. The 178 submitted abstracts had been evaluated by the Scientific Committee, and program was already draft- ed. With determination to enable sharing all this new knowledge and scientific experiences, we turned to look- ing into options for hosting the event online. With the support from OHEJP core group and OHEJP Communi- cations Team at University of Surrey, UK, we are happy to welcome you to an online version of the conference. The conference is organised as part of the OHEJP, an EU Horizon 2020, co-funded scientific collaborative pro- gramme. The programme is strenghtening cooperation between 38 partners with the aim to provide evidence for prevention and control of foodborne and environmental contamination affecting human and animal health. We believe that despite the physical distancing we will have social and scientific close interactions during our web-based conference. The programme is structured into eight sessions including invited key note lectures from leading experts. The conference also holds poster presentations and a PhD student competition. Please, enjoy the conference remotely in same way as you would enjoy face to face. Get the best from networking for your scientific inspiration. Vladimír Príkazský Renata Karpíšková National Institute of Public Health Veterinary Research Institute Prague Brno Czech Republic Czech Republic One Health EJP has received funding from the European Union’s Horizon 2020 research and innovation pro- gramme under grant agreement No 773830 1 OHEJP ASM 2020 Abstracts book Local Organising Committee: The National Institute of Public Health Veterinary Research Institute Vladimír Príkazský Renáta Karpíšková Šrobárova 49/48 Hudcova 296/70 Prague Brno [email protected] [email protected] One Health EJP ASM Team: Statens Serum Institut SVA Pikka Jokelainen Karin Artursson Denmark Sweden [email protected] [email protected] Sciensano University of Surrey Hein Imberechts Jade Passey Belgium United Kingdom [email protected] [email protected] ANSES University of Surrey Arnaud Callegari Piyali Basu France United Kingdom [email protected] [email protected] University of Surrey University of Surrey Roberto La Ragione Elaine Campling United Kingdom United Kingdom [email protected] [email protected] OHEJPASM2020 Scientific Committee Elina Lahti Koenraad Van Hoorde Daniel Thomas López Dan Horton Ana Botelho Břetislav Koudela Vladimír Príkazský Renáta Karpíšková Pikka Jokelainen Roberto La Ragione Karin Artursson Hein Imberechts Local Organising Agency: V.M.Est, a.s. V.M.Est, a.s. Ing. Jaroslav Michajlovič Anna Brychová Závišova 13/66 Závišova 13/66 Prague Prague [email protected] [email protected] 2 OHEJP ASM 2020 Abstracts book CONTENTS Manal AbuOun FARMED: Fast Antimicrobial Resistance & Mobile-Element Detection using metagen- P 8 omics for animal and human on-site tests Irene Aldea First report of trimethoprim resistance gene dfrA36 on an IncF-plasmid in Escherichia P 9 coli isolated from day-old chicks Julio Alvarez Development of algorithms for automated detection of Salmonella outbreaks in Min- O 10 nesota, US Ana Amaro Identification of multidrug resistant Escherichia coli ST410 carrying blaCTX-M-15 and P 11 aac(6')Ib-cr in food producing animals Ana Amaro Plasmid-mediated resistance to critically important antibiotics in Escherichia coli iso- P 12 lated from food animals and retail meat Muna Anjum Comparison of different antimicrobial resistance whole genome sequencing pipelines O 13 within ARDIG Patrícia Antunes mcr-1-carrying Enterobacteriaceae strains from raw chicken meat are enriched in an- P 14 tibiotic and metal tolerance genes: an underestimated One Health threat Karin Artursson A One Health approach to teach children and the public about disease transmission P 15 and antimicrobial resistance Karin Artursson From national pioneers to a part of the One Health community – One Health Sweden P 16 in 10 years Alžběta Baráková Retailed aquaculture products as a source of bacteria with mcr-mediated colistin re- P 17 sistance Teresita Bello Gonzalez Increase of Escherichia coli harbouring blaCTX-M-14 and blaCTX-M-15 isolated in cattle in the P 18 Netherlands: A continuous surveillance 2014-2018 Nadia Boisen OH-Harmony-Cap: One Health Harmonisation of Protocols for the Detection of Food- O 19 borne Pathogens and AMR Determinants Idesbald Boone Electronic data on food served in healthcare facilities in Italy and Germany O 20 Stefan Börjesson Wildlife, Agricultural soils, Water environments and antimicrobial resistance - what is P 21 known, needed and feasible for global Environmental Surveillance -WAWES Thomas Brauge Impact of disinfectant stress on the viability of Listeria monocytogenes cells in biofilm O 22 and on their transfer from surfaces to food Thomas Brauge Tracking antibioresistance in a North Sea largely harvested fish species: origin, drivers P 23 and human health issues Noah Brosseau Development of an aptamer-based test for Trichinella detection P 24 Kaye Burgess Bacterial Community Analysis of Slurry Amended Grassland P 25 Catherine Burgess Investigating the role of heavy metals in the environment as a selective pressure for P 26 the dissemination of antimicrobial resistance (HME-AMR) Catherine Burgess Bacterial abundance during storage and composting processes of pig manure P 27 Liam P Burke Shigatoxigenic Escherichia coli (STEC) contamination of private groundwater wells in P 28 the Republic of Ireland Elke Burow Selecting a biosecurity protocol to identify best practices for limitation of Salmonella P 29 and Hepatitis E virus occurrence in European pig farms Adriana Cabal Rosel FED-AMR: The role of free extracellular DNA in dissemination of antimicrobial resist- P 30 ance over ecosystem boundaries along the food/feed chain Ingrid Cardenas Rey Caecal microbiome dynamics of ESBL- Escherichia coli colonised and no colonised P 31 chickens Dominique Clermont Establishment of a shared MALDI-ToF reference spectra base, covering three patho- P 32 gens of interest Claudia Coipan Harmonization of molecular typing workflows – is it really necessary? An example O 33 from a large-scale international Salmonella Enteritidis outbreak Claudia Coipan Emergence of ESBL-producing Salmonella Kentucky blaCTX-M-14b in Europe O 34 Diana Connor MATRIX: Connecting dimensions in One Health surveillance P 35 Guido Cordoni Metagenomic Analysis of The Pig Gut Microbiota and association with Salmonella P 36 status Alessandra Cornacchia Detection of Klebsiella spp. in chicken meat: methods performance study P 37 3 OHEJP ASM 2020 Abstracts book Guido Correia Carreira ESBL/AmpC E.coli transmission in the broiler production chain: Linking models for O 38 primary production and processing Anna Czubkowska Bacterial foodborne pathogens in raw cow milk P 39 Filip Dámek Tropism and persistence of Toxoplasma gondii: from pork carcass to sausage and dry P 40 ham, a quantitative risk assessment Michele Luca D'Errico Factors affecting signals sharing of zoonotic events: a qualitative exploratory study in O 41 Italy Violeta Di Marzio Evaluation of antimicrobial resistance of Klebsiella pneumoniae strains in foods P 42 Adriano Di Pasquale The COHESIVE Information System: a cross EJP projects example O 43 Adriano Di Pasquale CgDIST a new methodology to inferring phylogeny P 44 Gina Duggan Investigating the shedding dynamics of Shiga-toxigenic Escherichia coli (STEC) using a O 45 whole genome sequencing approach Valérie Eijrond Intensive Livestock Farming: Is the risk for human health really the problem? O 46 Mahbod Entezami Mathematical and economic evaluation of cystic echinococcosis P 47 Ana Cristina Ferreira Brucella spp. core-genome to predict new markers for rapid identification of emerging P 48 species Matthias Filter RAKIP: Resources for harmonized annotation and efficient exchange of risk assess- O 49 ment models Matthias Filter The One Health Surveillance (OHS) Codex – a high level framework supporting mutual O 50 understanding and information exchange between One Health sectors Luca Freddi Brucella microti-like species in French frogs: environmental source or new host? O 51 Jakub Fusiak One Health EJP - RaDAR model inventory: a user-friendly tool for annotating and ex- P 52 changing models Anna Maria Gamża Understanding environmental transmission of Campylobacter in broilers: models and O 53 experiments Dagmar Gavačová „Exotic“ Salmonella infections associated with pet reptiles exposure identified in the P 54 Slovak Republic Mélanie Gay Characterisation and distribution of Cryptocotyle, potentially zoonotic parasite in ma- P 55 rine fish Tereza Gelbíčová Variability of mcr genes encoding colistin resistance from the natural
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