Threshold Harvesting As a Conservation Or Exploitation Strategy in Population Management
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Maximum Sustainable Yield from Interacting Fish Stocks in an Uncertain World: Two Policy Choices and Underlying Trade-Offs Arxiv
Maximum sustainable yield from interacting fish stocks in an uncertain world: two policy choices and underlying trade-offs Adrian Farcas Centre for Environment, Fisheries & Aquaculture Science Pakefield Road, Lowestoft NR33 0HT, United Kingdom [email protected] Axel G. Rossberg∗ Queen Mary University of London, School of Biological and Chemical Sciences, 327 Mile End Rd, London E1, United Kingdom and Centre for Environment, Fisheries & Aquaculture Science Pakefield Road, Lowestoft NR33 0HT, United Kingdom [email protected] 26 May 2016 c Crown copyright Abstract The case of fisheries management illustrates how the inherent structural instability of ecosystems can have deep-running policy implications. We contrast ten types of management plans to achieve maximum sustainable yields (MSY) from multiple stocks and compare their effectiveness based on a management strategy evalua- tion (MSE) that uses complex food webs in its operating model. Plans that target specific stock sizes (BMSY) consistently led to higher yields than plans targeting spe- cific fishing pressures (FMSY). A new self-optimising control rule, introduced here arXiv:1412.0199v6 [q-bio.PE] 31 May 2016 for its robustness to structural instability, led to intermediate yields. Most plans outperformed single-species management plans with pressure targets set without considering multispecies interactions. However, more refined plans to \maximise the yield from each stock separately", in the sense of a Nash equilibrium, produced total yields comparable to plans aiming to maximise total harvested biomass, and were more robust to structural instability. Our analyses highlight trade-offs between yields, amenability to negotiations, pressures on biodiversity, and continuity with current approaches in the European context. -
Ecoevoapps: Interactive Apps for Teaching Theoretical Models In
bioRxiv preprint doi: https://doi.org/10.1101/2021.06.18.449026; this version posted June 19, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. 1 Last rendered: 18 Jun 2021 2 Running head: EcoEvoApps 3 EcoEvoApps: Interactive Apps for Teaching Theoretical 4 Models in Ecology and Evolutionary Biology 5 Preprint for bioRxiv 6 Keywords: active learning, pedagogy, mathematical modeling, R package, shiny apps 7 Word count: 4959 words in the Main Body; 148 words in the Abstract 8 Supplementary materials: Supplemental PDF with 7 components (S1-S7) 1∗ 1∗ 2∗ 1 9 Authors: Rosa M. McGuire , Kenji T. Hayashi , Xinyi Yan , Madeline C. Cowen , Marcel C. 1 3 3,4 10 Vaz , Lauren L. Sullivan , Gaurav S. Kandlikar 1 11 Department of Ecology and Evolutionary Biology, University of California, Los Angeles 2 12 Department of Integrative Biology, University of Texas at Austin 3 13 Division of Biological Sciences, University of Missouri, Columbia 4 14 Division of Plant Sciences, University of Missouri, Columbia ∗ 15 These authors contributed equally to the writing of the manuscript, and author order was 16 decided with a random number generator. 17 Authors for correspondence: 18 Rosa M. McGuire: [email protected] 19 Kenji T. Hayashi: [email protected] 20 Xinyi Yan: [email protected] 21 Gaurav S. Kandlikar: [email protected] 22 Coauthor contact information: 23 Madeline C. Cowen: [email protected] 24 Marcel C. -
Synthetic Mutualism and the Intervention Dilemma
life Review Synthetic Mutualism and the Intervention Dilemma Jai A. Denton 1,† ID and Chaitanya S. Gokhale 2,*,† ID 1 Genomics and Regulatory Systems Unit, Okinawa Institute of Science and Technology, Onna-son 904-0412, Japan; [email protected] 2 Research Group for Theoretical models of Eco-Evolutionary Dynamics, Max Planck Institute for Evolutionary Biology, 24304 Plön, Germany * Correspondence: [email protected]; Tel.: +49-45-2276-3574 † These authors contributed equally to this work. Received: 30 October 2018; Accepted: 23 January 2019; Published: 28 January 2019 Abstract: Ecosystems are complex networks of interacting individuals co-evolving with their environment. As such, changes to an interaction can influence the whole ecosystem. However, to predict the outcome of these changes, considerable understanding of processes driving the system is required. Synthetic biology provides powerful tools to aid this understanding, but these developments also allow us to change specific interactions. Of particular interest is the ecological importance of mutualism, a subset of cooperative interactions. Mutualism occurs when individuals of different species provide a reciprocal fitness benefit. We review available experimental techniques of synthetic biology focused on engineered synthetic mutualistic systems. Components of these systems have defined interactions that can be altered to model naturally occurring relationships. Integrations between experimental systems and theoretical models, each informing the use or development of the other, allow predictions to be made about the nature of complex relationships. The predictions range from stability of microbial communities in extreme environments to the collapse of ecosystems due to dangerous levels of human intervention. With such caveats, we evaluate the promise of synthetic biology from the perspective of ethics and laws regarding biological alterations, whether on Earth or beyond. -
Introduction to Theoretical Ecology
Introduction to Theoretical Ecology Natal, 2011 Objectives After this week: The student understands the concept of a biological system in equilibrium and knows that equilibria can be stable or unstable. The student understands the basics of how coupled differential equations can be analyzed graphically, including phase plane analysis and nullclines. The student can analyze the stability of the equilibria of a one-dimensional differential equation model graphically. The student has a basic understanding of what a bifurcation point is. The student can relate alternative stable states to a 1D bifurcation plot (e.g. catastrophe fold). Study material / for further study: This text Scheffer, M. 2009. Critical Transitions in Nature and Society, Princeton University Press, Princeton and Oxford. Scheffer, M. 1998. Ecology of Shallow Lakes. 1 edition. Chapman and Hall, London. Edelstein-Keshet, L. 1988. Mathematical models in biology. 1 edition. McGraw-Hill, Inc., New York. Tentative programme (maybe too tight for the exercises) Monday 9:00-10:30 Introduction Modelling + introduction Forrester diagram + 1D models (stability graphs) 10:30-13:00 GRIND Practical CO2 chamber - Ethiopian Wolf Tuesday 9:00-10:00 Introduction bifurcation (Allee effect) and Phase plane analysis (Lotka-Volterra competition) 10:00-13:00 GRIND Practical Lotka-Volterra competition + Sahara Wednesday 9:00-13:00 GRIND Practical – Sahara (continued) and Algae-zooplankton Thursday 9:00-13:00 GRIND practical – Algae zooplankton spatial heterogeneity Friday 9:00-12:00 GRIND practical- Algae zooplankton fish 12:00-13:00 Practical summary/explanation of results - Wrap up 1 An introduction to models What is a model? The word 'model' is used widely in every-day language. -
Population Genetic Consequences of the Allee Effect and The
Genetics: Early Online, published on July 9, 2014 as 10.1534/genetics.114.167569 Population genetic consequences of the Allee effect and the 2 role of offspring-number variation Meike J. Wittmann, Wilfried Gabriel, Dirk Metzler 4 Ludwig-Maximilians-Universit¨at M¨unchen, Department Biology II 82152 Planegg-Martinsried, Germany 6 Running title: Allee effect and genetic diversity Keywords: family size, founder effect, genetic diversity, introduced species, stochastic modeling 8 Corresponding author: Meike J. Wittmann Present address: Stanford University 10 Department of Biology 385 Serra Mall, Stanford, CA 94305-5020, USA 12 [email protected] 1 Copyright 2014. Abstract 14 A strong demographic Allee effect in which the expected population growth rate is nega- tive below a certain critical population size can cause high extinction probabilities in small 16 introduced populations. But many species are repeatedly introduced to the same location and eventually one population may overcome the Allee effect by chance. With the help of 18 stochastic models, we investigate how much genetic diversity such successful populations har- bor on average and how this depends on offspring-number variation, an important source of 20 stochastic variability in population size. We find that with increasing variability, the Allee effect increasingly promotes genetic diversity in successful populations. Successful Allee-effect 22 populations with highly variable population dynamics escape rapidly from the region of small population sizes and do not linger around the critical population size. Therefore, they are 24 exposed to relatively little genetic drift. It is also conceivable, however, that an Allee effect itself leads to an increase in offspring-number variation. -
Fisheries Managementmanagement
ISSN 1020-5292 FAO TECHNICAL GUIDELINES FOR RESPONSIBLE FISHERIES 4 Suppl. 2 Add.1 FISHERIESFISHERIES MANAGEMENTMANAGEMENT These guidelines were produced as an addition to the FAO Technical Guidelines for 2. The ecosystem approach to fisheries Responsible Fisheries No. 4, Suppl. 2 entitled Fisheries management. The ecosystem approach to fisheries (EAF). Applying EAF in management requires the application of 2.1 Best practices in ecosystem modelling scientific methods and tools that go beyond the single-species approaches that have been the main sources of scientific advice. These guidelines have been developed to forfor informinginforming anan ecosystemecosystem approachapproach toto fisheriesfisheries assist users in the construction and application of ecosystem models for informing an EAF. It addresses all steps of the modelling process, encompassing scoping and specifying the model, implementation, evaluation and advice on how to present and use the outputs. The overall goal of the guidelines is to assist in ensuring that the best possible information and advice is generated from ecosystem models and used wisely in management. ISBN 978-92-5-105995-1 ISSN 1020-5292 9 7 8 9 2 5 1 0 5 9 9 5 1 TC/M/I0151E/1/05.08/1630 Cover illustration: Designed by Elda Longo. FAO TECHNICAL GUIDELINES FOR RESPONSIBLE FISHERIES 4 Suppl. 2 Add 1 FISHERIES MANAGEMENT 2.2. TheThe ecosystemecosystem approachapproach toto fisheriesfisheries 2.12.1 BestBest practicespractices inin ecosystemecosystem modellingmodelling forfor informinginforming anan ecosystemecosystem approachapproach toto fisheriesfisheries FOOD AND AGRICULTURE ORGANIZATION OF THE UNITED NATIONS Rome, 2008 The designations employed and the presentation of material in this information product do not imply the expression of any opinion whatsoever on the part of the Food and Agriculture Organization of the United Nations (FAO) concerning the legal or development status of any country, territory, city or area or of its authorities, or concerning the delimitation of its frontiers or boundaries. -
Meta-Ecosystems: a Theoretical Framework for a Spatial Ecosystem Ecology
Ecology Letters, (2003) 6: 673–679 doi: 10.1046/j.1461-0248.2003.00483.x IDEAS AND PERSPECTIVES Meta-ecosystems: a theoretical framework for a spatial ecosystem ecology Abstract Michel Loreau1*, Nicolas This contribution proposes the meta-ecosystem concept as a natural extension of the Mouquet2,4 and Robert D. Holt3 metapopulation and metacommunity concepts. A meta-ecosystem is defined as a set of 1Laboratoire d’Ecologie, UMR ecosystems connected by spatial flows of energy, materials and organisms across 7625, Ecole Normale Supe´rieure, ecosystem boundaries. This concept provides a powerful theoretical tool to understand 46 rue d’Ulm, F–75230 Paris the emergent properties that arise from spatial coupling of local ecosystems, such as Cedex 05, France global source–sink constraints, diversity–productivity patterns, stabilization of ecosystem 2Department of Biological processes and indirect interactions at landscape or regional scales. The meta-ecosystem Science and School of perspective thereby has the potential to integrate the perspectives of community and Computational Science and Information Technology, Florida landscape ecology, to provide novel fundamental insights into the dynamics and State University, Tallahassee, FL functioning of ecosystems from local to global scales, and to increase our ability to 32306-1100, USA predict the consequences of land-use changes on biodiversity and the provision of 3Department of Zoology, ecosystem services to human societies. University of Florida, 111 Bartram Hall, Gainesville, FL Keywords 32611-8525, -
AC28 Inf. 30 (English and Spanish Only / Únicamente En Inglés Y Español / Seulement En Anglais Et Espagnol)
AC28 Inf. 30 (English and Spanish only / únicamente en inglés y español / seulement en anglais et espagnol) CONVENTION ON INTERNATIONAL TRADE IN ENDANGERED SPECIES OF WILD FAUNA AND FLORA ___________________ Twenty-eighth meeting of the Animals Committee Tel Aviv (Israel), 30 August-3 September 2015 REPORT OF THE SECOND MEETING OF THE CFMC/OSPESCA/WECAFC/CRFM WORKING GROUP ON QUEEN CONCH The attached information document has been submitted by the Secretariat on behalf of the FAO Western Central Atlantic Fishery Commission in relation to agenda item 19.* * The geographical designations employed in this document do not imply the expression of any opinion whatsoever on the part of the CITES Secretariat (or the United Nations Environment Programme) concerning the legal status of any country, territory, or area, or concerning the delimitation of its frontiers or boundaries. The responsibility for the contents of the document rests exclusively with its author. AC28 Inf. 30 – p. 1 SLC/FIPS/SLM R1097 FAO Fisheries and Aquaculture Report ISSN 2070-6987 WESTERN CENTRAL ATLANTIC FISHERY COMMISSION Report of the SECOND MEETING OF THE CFMC/OSPESCA/WECAFC/CRFM WORKING GROUP ON QUEEN CONCH Panama City, Panama, 18–20 November 2014 DRAFT Prepared for the 28th meeting of the Animals Committee (A final version in English, French and Spanish is expected to be published by October 2015) 1 PREPARATION OF THIS DOCUMENT This is the report of the second meeting of the Caribbean Fisheries Management Council (CFMC), Organization for the Fisheries and Aquaculture Sector of the Central American Isthmus (OSPESCA), Western Central Atlantic Fishery Commission (WECAFC) and the Caribbean Regional Fisheries Mechanism (CRFM) Working Group on Queen Conch, held in Panama City, Panama, from 18 to 20 November 2014. -
Life History Strategies, Population Regulation, and Implications for Fisheries Management1
872 PERSPECTIVE / PERSPECTIVE Life history strategies, population regulation, and implications for fisheries management1 Kirk O. Winemiller Abstract: Life history theories attempt to explain the evolution of organism traits as adaptations to environmental vari- ation. A model involving three primary life history strategies (endpoints on a triangular surface) describes general pat- terns of variation more comprehensively than schemes that examine single traits or merely contrast fast versus slow life histories. It provides a general means to predict a priori the types of populations with high or low demographic resil- ience, production potential, and conformity to density-dependent regulation. Periodic (long-lived, high fecundity, high recruitment variation) and opportunistic (small, short-lived, high reproductive effort, high demographic resilience) strat- egies should conform poorly to models that assume density-dependent recruitment. Periodic-type species reveal greatest recruitment variation and compensatory reserve, but with poor conformity to stock–recruitment models. Equilibrium- type populations (low fecundity, large egg size, parental care) should conform better to assumptions of density- dependent recruitment, but have lower demographic resilience. The model’s predictions are explored relative to sustain- able harvest, endangered species conservation, supplemental stocking, and transferability of ecological indices. When detailed information is lacking, species ordination according to the triangular model provides qualitative -
Optimal Control of a Fishery Utilizing Compensation and Critical Depensation Models
Appl. Math. Inf. Sci. 14, No. 3, 467-479 (2020) 467 Applied Mathematics & Information Sciences An International Journal http://dx.doi.org/10.18576/amis/140314 Optimal Control of a Fishery Utilizing Compensation and Critical Depensation Models Mahmud Ibrahim Department of Mathematics, University of Cape Coast, Cape Coast, Ghana Received: 12 Dec. 2019, Revised: 2 Jan. 2020, Accepted: 15 Feb. 2020 Published online: 1 May 2020 Abstract: This study proposes optimal control problems with two different biological dynamics: a compensation model and a critical depensation model. The static equilibrium reference points of the models are defined and discussed. Also, bifurcation analyses on the models show the existence of transcritical and saddle-node bifurcations for the compensation and critical depensation models respectively. Pontyagin’s maximum principle is employed to determine the necessary conditions of the model. In addition, sufficiency conditions that guarantee the existence and uniqueness of the optimality system are defined. The characterization of the optimal control gives rise to both the boundary and interior solutions, with the former indicating that the resource should be harvested if and only if the value of the net revenue per unit harvest (due to the application of up to the maximum fishing effort) is at least the value of the shadow price of fish stock. Numerical simulations with empirical data on the sardinella are carried out to validate the theoretical results. Keywords: Optimal control, Compensation, Critical depensation, Bifurcation, Shadow price, Ghana sardinella fishery 1 Introduction harvesting of either species. The study showed that, with harvesting effort serving as a control, the system could be steered towards a desirable state, and so breaking its Fish stocks across the world are increasingly under cyclic behavior. -
Theoretical Ecology Syllabus 2018 Revised
WILD 595 Fall 2018 Syllabus Theoretical Ecology – WILD 595 Fall Semester 2018 Instructor: Dr. Angie Luis ([email protected]) Suggested Readings An Illustrated Guide to Theoretical Ecology, Ted Case A Primer of Ecology, Nicholas Gotelli Additional readings will be assigned Tentative Class meeting times: Lecture/ Lab MW 8:30-9:50 Clapp 452 Discussion R 3:00-3:50 Clapp 452 Office Hours Mondays & Wednesdays 1-1:50 or by appointment, FOR 207A Overview This class is meant to provide a general toolbox of ecological modeling approaches. It will be more about how to model than about models themselves, but in illustration we will cover a variety of commonly used ecological and evolutionary models, ranging from behavior of individuals (optimality, game theory) to populations (structured and unstructured, logistic growth, matrix models) to communities (competition, predation, parasitism). The focus will be on formalizing conceptual ideas into a mathematical framework, and will not deal heavily with data. (Of course, data is important, but other courses here concentrate on data and model fitting.) This course will give you the skills to help comprehend theoretical papers and to create your own models. The course is a mix of lecture, lab (in R), case studies, and discussion. There will be a fairly high work load (hence 4 credits), with 2 lab assignments due most weeks, weekly readings, and will culminate with a project in which you will design a model for some aspect of your study system. The intention is for the project to be a chapter of your thesis/dissertation or a side-project that could be published. -
Depensation: Evidence, Models and Implications
Paper 29 Disc FISH and FISHERIES, 2001, 2, 33±58 Depensation: evidence, models and implications Martin Liermann1 & Ray Hilborn2 1Quantitative Ecology and Resource Management, University of Washington, Seattle, WA 98115, USA; 2School of Fisheries Box 355020, University of Washington, Seattle, WA 98195, USA Abstract Correspondence: We review the evidence supporting depensation, describe models of two depensatory Martin Liermann, National Marine mechanisms and how they can be included in population dynamics models and Fisheries Service, discuss the implications of depensation. The evidence for depensation can be grouped North-west Fisheries into four mechanisms: reduced probability of fertilisation, impaired group dynamics, Science Center, 2725 Ahed conditioning of the environment and predator saturation. Examples of these Montlake Blvd. E., Bhed mechanisms come from a broad range of species including fishes, arthropods, birds, Seattle, WA 98112± Ched 2013, USA mammals and plants. Despite the large number of studies supporting depensatory Dhed Tel: +206 860 6781 mechanisms, there is very little evidence of depensation that is strong enough to be Fax: +206 860 3335 Ref marker important in a population's dynamics. However, because factors such as E-mail: martin. Fig marker demographic and environmental variability make depensatory population dynamics [email protected] Table marker difficult to detect, this lack of evidence should not be interpreted as evidence that Ref end depensatory dynamics are rare and unimportant. The majority of depensatory models Ref start Received 22 Sep 2000 are based on reduced probability of fertilisation and predator saturation. We review Accepted 29Nov 2000 the models of these mechanisms and different ways they can be incorporated in population dynamics models.