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Population Ecology: Theory, Methods, Lenses Dr. Bill Fagan
Population ecology: Theory, methods, lenses Dr. Bill Fagan Population Ecology & Spatial Ecology A) Core principles of population growth B) Spatial problems and methods for modeling them C) Integrodifference equations as a robust platform Population Ecology & Spatial Ecology A) Core principles of population growth B) Spatial problems and methods for modeling them C) Integrodifference equations as a robust platform Socio – Environmental Issues: 1. Fisheries 2. Invasive Species 3. Biological Control 4. Ecological Footprints 5. Critical Patch Size / Reserve Design A) Core principles of population growth Berryman: On principles, laws, and theory in population ecology. Oikos. 2003 1) Exponential population growth as a null baseline. What causes deviations from that ? The Basics of Discrete Time Models Have Form Nt1 f Nt , Nt1, Nt2 ,... where N is the thing you are measuring and t is an index representing blocks of time. Constant time step = 1 unit (year, month, day, second) Time is discrete, #’s need not be In many cases Nt1 f Nt Reduced Form Status next time step depends only on where system is now. history is unimportant Alternatively: N t 1 f N t , N t 1 , N t 2 ... history is important wide applicability 1) Many ecological phenomenon change discretely - insects don’t hatch out all day long, only in morning - rodents are less mobile near full moon - seeds germinate in spring daily censuses 2) Data were collected at discrete times yearly censuses The Simplest Discrete Time Model N t1 N t “Geometric” Growth Equation N Thing we -
Concept of Population Ecology
Mini Review Int J Environ Sci Nat Res Volume 12 Issue 1 - June 2018 Copyright © All rights are reserved by Nida Tabassum Khan DOI: 10.19080/IJESNR.2018.12.555828 Concept of Population Ecology Nida Tabassum Khan* Department of Biotechnology, Faculty of Life Sciences and Informatics, Balochistan University of Information Technology Engineering and Management Sciences, Pakistan Submission: May 29, 2018; Published: June 06, 2018 *Corresponding author: Nida Tabassum Khan, Department of Biotechnology, Balochistan University, Quetta, Pakistan, Tel: ; Email: Abstract Population ecology deals with the study of the structure and subtleties of a population which comprises of a group of interacting organisms of the same specie that occupies a given area. The demographic structure of a population is a key factor which is characterized by the number of is growing, shrinking or remain constant in terms of its size. individual members (population size) present at each developmental stage of their cycle to identify whether the population of a specific specie Keywords: Population size; Population density; Gene pool; Life tables Introduction of random genetic drift therefore variation is easily sustained Population ecology deals with the study of the structure in large populations than in smaller ones [10]. Natural selection and subtleties of a population which comprises of a group of selects the most favorable phenotypes suited for an organism interacting organisms of the same specie that occupies a given survival thereby reducing variation within populations [11]. area [1]. Populations can be characterized as local which is a Population structure determines the arrays of demographic group of less number of individuals occupying a small area or variation such as mode of reproduction, age, reproduction met which is a group of local populations linked by disbanding frequency, offspring counts, gender ratio of newborns etc within/ members [2]. -
Maximum Sustainable Yield from Interacting Fish Stocks in an Uncertain World: Two Policy Choices and Underlying Trade-Offs Arxiv
Maximum sustainable yield from interacting fish stocks in an uncertain world: two policy choices and underlying trade-offs Adrian Farcas Centre for Environment, Fisheries & Aquaculture Science Pakefield Road, Lowestoft NR33 0HT, United Kingdom [email protected] Axel G. Rossberg∗ Queen Mary University of London, School of Biological and Chemical Sciences, 327 Mile End Rd, London E1, United Kingdom and Centre for Environment, Fisheries & Aquaculture Science Pakefield Road, Lowestoft NR33 0HT, United Kingdom [email protected] 26 May 2016 c Crown copyright Abstract The case of fisheries management illustrates how the inherent structural instability of ecosystems can have deep-running policy implications. We contrast ten types of management plans to achieve maximum sustainable yields (MSY) from multiple stocks and compare their effectiveness based on a management strategy evalua- tion (MSE) that uses complex food webs in its operating model. Plans that target specific stock sizes (BMSY) consistently led to higher yields than plans targeting spe- cific fishing pressures (FMSY). A new self-optimising control rule, introduced here arXiv:1412.0199v6 [q-bio.PE] 31 May 2016 for its robustness to structural instability, led to intermediate yields. Most plans outperformed single-species management plans with pressure targets set without considering multispecies interactions. However, more refined plans to \maximise the yield from each stock separately", in the sense of a Nash equilibrium, produced total yields comparable to plans aiming to maximise total harvested biomass, and were more robust to structural instability. Our analyses highlight trade-offs between yields, amenability to negotiations, pressures on biodiversity, and continuity with current approaches in the European context. -
Synthetic Mutualism and the Intervention Dilemma
life Review Synthetic Mutualism and the Intervention Dilemma Jai A. Denton 1,† ID and Chaitanya S. Gokhale 2,*,† ID 1 Genomics and Regulatory Systems Unit, Okinawa Institute of Science and Technology, Onna-son 904-0412, Japan; [email protected] 2 Research Group for Theoretical models of Eco-Evolutionary Dynamics, Max Planck Institute for Evolutionary Biology, 24304 Plön, Germany * Correspondence: [email protected]; Tel.: +49-45-2276-3574 † These authors contributed equally to this work. Received: 30 October 2018; Accepted: 23 January 2019; Published: 28 January 2019 Abstract: Ecosystems are complex networks of interacting individuals co-evolving with their environment. As such, changes to an interaction can influence the whole ecosystem. However, to predict the outcome of these changes, considerable understanding of processes driving the system is required. Synthetic biology provides powerful tools to aid this understanding, but these developments also allow us to change specific interactions. Of particular interest is the ecological importance of mutualism, a subset of cooperative interactions. Mutualism occurs when individuals of different species provide a reciprocal fitness benefit. We review available experimental techniques of synthetic biology focused on engineered synthetic mutualistic systems. Components of these systems have defined interactions that can be altered to model naturally occurring relationships. Integrations between experimental systems and theoretical models, each informing the use or development of the other, allow predictions to be made about the nature of complex relationships. The predictions range from stability of microbial communities in extreme environments to the collapse of ecosystems due to dangerous levels of human intervention. With such caveats, we evaluate the promise of synthetic biology from the perspective of ethics and laws regarding biological alterations, whether on Earth or beyond. -
Introduction to Theoretical Ecology
Introduction to Theoretical Ecology Natal, 2011 Objectives After this week: The student understands the concept of a biological system in equilibrium and knows that equilibria can be stable or unstable. The student understands the basics of how coupled differential equations can be analyzed graphically, including phase plane analysis and nullclines. The student can analyze the stability of the equilibria of a one-dimensional differential equation model graphically. The student has a basic understanding of what a bifurcation point is. The student can relate alternative stable states to a 1D bifurcation plot (e.g. catastrophe fold). Study material / for further study: This text Scheffer, M. 2009. Critical Transitions in Nature and Society, Princeton University Press, Princeton and Oxford. Scheffer, M. 1998. Ecology of Shallow Lakes. 1 edition. Chapman and Hall, London. Edelstein-Keshet, L. 1988. Mathematical models in biology. 1 edition. McGraw-Hill, Inc., New York. Tentative programme (maybe too tight for the exercises) Monday 9:00-10:30 Introduction Modelling + introduction Forrester diagram + 1D models (stability graphs) 10:30-13:00 GRIND Practical CO2 chamber - Ethiopian Wolf Tuesday 9:00-10:00 Introduction bifurcation (Allee effect) and Phase plane analysis (Lotka-Volterra competition) 10:00-13:00 GRIND Practical Lotka-Volterra competition + Sahara Wednesday 9:00-13:00 GRIND Practical – Sahara (continued) and Algae-zooplankton Thursday 9:00-13:00 GRIND practical – Algae zooplankton spatial heterogeneity Friday 9:00-12:00 GRIND practical- Algae zooplankton fish 12:00-13:00 Practical summary/explanation of results - Wrap up 1 An introduction to models What is a model? The word 'model' is used widely in every-day language. -
Meta-Ecosystems: a Theoretical Framework for a Spatial Ecosystem Ecology
Ecology Letters, (2003) 6: 673–679 doi: 10.1046/j.1461-0248.2003.00483.x IDEAS AND PERSPECTIVES Meta-ecosystems: a theoretical framework for a spatial ecosystem ecology Abstract Michel Loreau1*, Nicolas This contribution proposes the meta-ecosystem concept as a natural extension of the Mouquet2,4 and Robert D. Holt3 metapopulation and metacommunity concepts. A meta-ecosystem is defined as a set of 1Laboratoire d’Ecologie, UMR ecosystems connected by spatial flows of energy, materials and organisms across 7625, Ecole Normale Supe´rieure, ecosystem boundaries. This concept provides a powerful theoretical tool to understand 46 rue d’Ulm, F–75230 Paris the emergent properties that arise from spatial coupling of local ecosystems, such as Cedex 05, France global source–sink constraints, diversity–productivity patterns, stabilization of ecosystem 2Department of Biological processes and indirect interactions at landscape or regional scales. The meta-ecosystem Science and School of perspective thereby has the potential to integrate the perspectives of community and Computational Science and Information Technology, Florida landscape ecology, to provide novel fundamental insights into the dynamics and State University, Tallahassee, FL functioning of ecosystems from local to global scales, and to increase our ability to 32306-1100, USA predict the consequences of land-use changes on biodiversity and the provision of 3Department of Zoology, ecosystem services to human societies. University of Florida, 111 Bartram Hall, Gainesville, FL Keywords 32611-8525, -
Community-Based Population Recovery of Overexploited Amazonian Wildlife
G Model PECON-41; No. of Pages 5 ARTICLE IN PRESS Perspectives in Ecology and Conservation xxx (2017) xxx–xxx ´ Supported by Boticario Group Foundation for Nature Protection www.perspectecolconserv.com Policy Forums Community-based population recovery of overexploited Amazonian wildlife a,∗ b c d e João Vitor Campos-Silva , Carlos A. Peres , André P. Antunes , João Valsecchi , Juarez Pezzuti a Institute of Biological and Health Sciences, Federal University of Alagoas, Av. Lourival Melo Mota, s/n, Tabuleiro do Martins, Maceió 57072-900, AL, Brazil b Centre for Ecology, Evolution and Conservation, School of Environmental Sciences, University of East Anglia, Norwich Research Park, Norwich NR47TJ, UK c Wildlife Conservation Society Brasil, Federal University of Amazonas, Av. Rodrigo Otavio, 3000, Manaus 69077-000, Amazonas, Brazil d Mamiraua Sustainable Development Institute (IDSM), Estrada da Bexiga 2584, Fonte Boa, Tefé, AM, Brazil e Centre for Advanced Amazon Studies, Federal University of Para, R. Augusto Correa 01, CEP 66075-110, Belém, PA, Brazil a b s t r a c t a r t i c l e i n f o Article history: The Amazon Basin experienced a pervasive process of resource overexploitation during the 20th-century, Received 3 June 2017 which induced severe population declines of many iconic vertebrate species. In addition to biodiversity Accepted 18 August 2017 loss and the ecological consequences of defaunation, food security of local communities was relentlessly threatened because wild meat had a historically pivotal role in protein acquisition by local dwellers. Keywords: Here we discuss the urgent need to regulate subsistence hunting by Amazonian semi-subsistence local Hunting regulation communities, which are far removed from the market and information economy. -
Theoretical Ecology Syllabus 2018 Revised
WILD 595 Fall 2018 Syllabus Theoretical Ecology – WILD 595 Fall Semester 2018 Instructor: Dr. Angie Luis ([email protected]) Suggested Readings An Illustrated Guide to Theoretical Ecology, Ted Case A Primer of Ecology, Nicholas Gotelli Additional readings will be assigned Tentative Class meeting times: Lecture/ Lab MW 8:30-9:50 Clapp 452 Discussion R 3:00-3:50 Clapp 452 Office Hours Mondays & Wednesdays 1-1:50 or by appointment, FOR 207A Overview This class is meant to provide a general toolbox of ecological modeling approaches. It will be more about how to model than about models themselves, but in illustration we will cover a variety of commonly used ecological and evolutionary models, ranging from behavior of individuals (optimality, game theory) to populations (structured and unstructured, logistic growth, matrix models) to communities (competition, predation, parasitism). The focus will be on formalizing conceptual ideas into a mathematical framework, and will not deal heavily with data. (Of course, data is important, but other courses here concentrate on data and model fitting.) This course will give you the skills to help comprehend theoretical papers and to create your own models. The course is a mix of lecture, lab (in R), case studies, and discussion. There will be a fairly high work load (hence 4 credits), with 2 lab assignments due most weeks, weekly readings, and will culminate with a project in which you will design a model for some aspect of your study system. The intention is for the project to be a chapter of your thesis/dissertation or a side-project that could be published. -
The Ecology of Mutualism
Annual Reviews www.annualreviews.org/aronline AngRev. Ecol. Syst. 1982.13:315--47 Copyright©1982 by Annual Reviews lnc. All rightsreserved THE ECOLOGY OF MUTUALISM Douglas 1t. Boucher Departementdes sciences biologiques, Universit~ du Quebec~ Montreal, C. P. 8888, Suet. A, Montreal, Quebec, CanadaH3C 3P8 Sam James Departmentof Ecologyand Evolutionary Biology, University of Michigan, Ann Arbor, Michigan, USA48109 Kathleen H. Keeler School of Life Sciences, University of Nebraska,Lincoln, Nebraska,USA 68588 INTRODUCTION Elementaryecology texts tell us that organismsinteract in three fundamen- tal ways, generally given the namescompetition, predation, and mutualism. The third memberhas gotten short shrift (264), and even its nameis not generally agreed on. Terms that may be considered synonyms,in whole or part, are symbiosis, commensalism,cooperation, protocooperation, mutual aid, facilitation, reciprocal altruism, and entraide. Weuse the term mutual- by University of Kanas-Lawrence & Edwards on 09/26/05. For personal use only. ism, defined as "an interaction betweenspecies that is beneficial to both," Annu. Rev. Ecol. Syst. 1982.13:315-347. Downloaded from arjournals.annualreviews.org since it has both historical priority (311) and general currency. Symbiosis is "the living together of two organismsin close association," and modifiers are used to specify dependenceon the interaction (facultative or obligate) and the range of species that can take part (oligophilic or polyphilic). We make the normal apologies concerning forcing continuous variation and diverse interactions into simple dichotomousclassifications, for these and all subsequentdefinitions. Thus mutualism can be defined, in brief, as a -b/q- interaction, while competition, predation, and eommensalismare respectively -/-, -/q-, and -t-/0. There remains, however,the question of howto define "benefit to the 315 0066-4162/82/1120-0315 $02.00 Annual Reviews www.annualreviews.org/aronline 316 BOUCHER, JAMES & KEELER species" without evoking group selection. -
Carrying Capacity
CarryingCapacity_Sayre.indd Page 54 12/22/11 7:31 PM user-f494 /203/BER00002/Enc82404_disk1of1/933782404/Enc82404_pagefiles Carrying Capacity Carrying capacity has been used to assess the limits of into a single defi nition probably would be “the maximum a wide variety of things, environments, and systems to or optimal amount of a substance or organism (X ) that convey or sustain other things, organisms, or popula- can or should be conveyed or supported by some encom- tions. Four major types of carrying capacity can be dis- passing thing or environment (Y ).” But the extraordinary tinguished; all but one have proved empirically and breadth of the concept so defi ned renders it extremely theoretically fl awed because the embedded assump- vague. As the repetitive use of the word or suggests, car- tions of carrying capacity limit its usefulness to rying capacity can be applied to almost any relationship, bounded, relatively small-scale systems with high at almost any scale; it can be a maximum or an optimum, degrees of human control. a normative or a positive concept, inductively or deduc- tively derived. Better, then, to examine its historical ori- gins and various uses, which can be organized into four he concept of carrying capacity predates and in many principal types: (1) shipping and engineering, beginning T ways prefi gures the concept of sustainability. It has in the 1840s; (2) livestock and game management, begin- been used in a wide variety of disciplines and applica- ning in the 1870s; (3) population biology, beginning in tions, although it is now most strongly associated with the 1950s; and (4) debates about human population and issues of global human population. -
A Pragmatic Approach to Evaluating Models in Theoretical Ecology
Biology and Philosophy (2005) 20:231–255 Ó Springer 2005 DOI 10.1007/s10539-004-0478-6 Idealized, inaccurate but successful: A pragmatic approach to evaluating models in theoretical ecology JAY ODENBAUGH Department of Philosophy, Lewis and Clark College, Portland, Oregon 97219 (e-mail: jay@lclark. edu) Received 15 October 2003; accepted in revised form 21 May 2004 Key words: Accuracy, Ecology, Heuristic, Idealization, Mathematics, Model, Pragmatism, Prediction, Theory Abstract. Ecologists attempt to understand the diversity of life with mathematical models. Often, mathematical models contain simplifying idealizations designed to cope with the blooming, buzzing confusion of the natural world. This strategy frequently issues in models whose predictions are inaccurate. Critics of theoretical ecology argue that only predictively accurate models are successful and contribute to the applied work of conservation biologists. Hence, they think that much of the mathematical work of ecologists is poor science. Against this view, I argue that model building is successful even when models are predictively inaccurate for at least three reasons: models allow scientists to explore the possible behaviors of ecological systems; models give scientists simplified means by which they can investigate more complex systems by determining how the more complex system deviates from the simpler model; and models give scientists conceptual frameworks through which they can conduct experiments and fieldwork. Critics often mistake the purposes of model building, and once we recognize this, we can see their complaints are unjustified. Even though models in ecology are not always accurate in their assumptions and predictions, they still contribute to successful science. Introduction In this essay, I explore how simple models in theoretical ecology can be used to investigate and learn about complex populations, communities, and ecosys- tems. -
How Can We Predict and Determine the Ecological Carrying Capacity of a Predator Species in an Enclosed Wildlife Protected Area?
Forestry Research and Engineering: International Journal Review Article Open Access How can we predict and determine the ecological carrying capacity of a predator species in an enclosed wildlife protected area? Abstract Volume 4 Issue 1 - 2020 Knowledge and insights on the ecological carrying capacity of a predator species is crucial for the conservation and management of an enclosed wildlife protected area. The objective Solomon Ayele Tadesse of this review was to suggest and discuss the relevant factors and formulate quantitative College of Agriculture and Natural Resource Sciences, Ethiopia statistical model that helps accurately predict and determine the ecological carrying capacity of a predator species in an enclosed system. To accurately predict and determine Correspondence: Solomon Ayele Tadesse, Department of Natural Resources Management, College of Agriculture and the ecological carrying capacity of a predator species, theoretical and empirical quantitative Natural Resource Sciences, Debre Berhan University, Ethiopia, models should consider as many relevant factors as possible by which reliable and valid Tel +251-111-6815440/+251-946-703660, Fax +251-111- estimations can be made. Having considered several imperative factors, this review 6812065, Email suggested and formulated a quantitative statistical model that helps accurately predict and determine the ecological carrying capacity of a predator species in an enclosed system. It is Received: November 13, 2019 | Published: January 02, 2020 recommended that wildlife conservation researchers should consider the various essential factors in an integrated fashion while testing their hypotheses through experimental and/or observational scientific studies. More importantly, the application of multiple hypotheses testing will help improve the accuracy in making reliable and valid estimations on the ecological carrying capacity of a predator species in a complex natural system.