Common Coralline Algae of Northern New Zealand an Identification Guide
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High CO2 Reduces the Settlement of a Spawning Coral on Three Common Species of Crustose Coralline Algae
Vol. 475: 93–99, 2013 MARINE ECOLOGY PROGRESS SERIES Published February 14 doi: 10.3354/meps10096 Mar Ecol Prog Ser High CO2 reduces the settlement of a spawning coral on three common species of crustose coralline algae Christopher Doropoulos1,2,*, Guillermo Diaz-Pulido2,3 1School of Biological Sciences, The University of Queensland, St Lucia, Queensland 4072, Australia 2Australian Research Council Centre of Excellence for Coral Reef Studies, Queensland 4072, Australia 3School of Environment and Australian Rivers Institute, Griffith University, Nathan, Queensland 4111, Australia ABSTRACT: Concern about the impacts of ocean acidification (OA) on ecosystem function has prompted many studies to focus on larval recruitment, demonstrating declines in settlement and early growth at elevated CO2 concentrations. Since larval settlement is often driven by particular cues governed by crustose coralline algae (CCA), it is important to determine whether OA reduces larval recruitment with specific CCA and the generality of any effects. We tested the effect of elevated CO2 on the survival and settlement of larvae from the common spawning coral Acropora selago with 3 ecologically important species of CCA, Porolithon onkodes, Sporolithon sp., and Titanoderma sp. After 3 d in no-choice laboratory assays at 447, 705, and 1214 µatm pCO2, the rates of coral settlement declined as pCO2 increased with all CCA taxa. The magnitude of the effect was highest with Titanoderma sp., decreasing by 87% from the ambient to highest CO2 treatment. In general, there were high rates of larval mortality, which were greater with the P. onkodes and Sporolithon sp. treatments (~80%) compared to the Titanoderma sp. treatment (65%). -
Supplementary Material
Supplementary Material SM1. Post-Processing of Images for Automated Classification Imagery was collected without artificial light and using a fisheye lens to maximise light capture, therefore each image needed to be processed prior annotation in order to balance colour and to minimise the non-linear distortion introduced by the fisheye lens (Figure S1). Initially, colour balance and lenses distortion correction were manually applied on the raw images using Photoshop (Adobe Systems, California, USA). However, in order to optimize the manual post-processing time of thousands of images, more recent images from the Indian Ocean and Pacific Ocean were post- processed using compressed images (jpeg format) and an automatic batch processing in Photoshop and ImageMagick, the latter an open-source software for image processing (www.imagemagick.org). In view of this, the performance of the automated image annotation on images without colour balance was contrasted against images colour balanced using manual post-processing (on raw images) and the automatic batch processing (on jpeg images). For this evaluation, the error metric described in the main text (Materials and Methods) was applied to the images from following regions: the Maldives and the Great Barrier Reef (Figures S2 and S3). We found that the colour balance applied regardless the type of processing (manual vs automatic) had an important beneficial effect on the performance of the automated image annotation as errors were reduced for critical labels in both regions (e.g., Algae labels; Figures S2 and S3). Importantly, no major differences in the performance of the automated annotations were observed between manual and automated adjustments for colour balance. -
Three Challenges to Contemporaneous Taxonomy from a Licheno-Mycological Perspective
Megataxa 001 (1): 078–103 ISSN 2703-3082 (print edition) https://www.mapress.com/j/mt/ MEGATAXA Copyright © 2020 Magnolia Press Review ISSN 2703-3090 (online edition) https://doi.org/10.11646/megataxa.1.1.16 Three challenges to contemporaneous taxonomy from a licheno-mycological perspective ROBERT LÜCKING Botanischer Garten und Botanisches Museum, Freie Universität Berlin, Königin-Luise-Straße 6–8, 14195 Berlin, Germany �[email protected]; https://orcid.org/0000-0002-3431-4636 Abstract Nagoya Protocol, and does not need additional “policing”. Indeed, the Nagoya Protocol puts the heaviest burden on This paper discusses three issues that challenge contempora- taxonomy and researchers cataloguing biodiversity, whereas neous taxonomy, with examples from the fields of mycology for the intended target group, namely those seeking revenue and lichenology, formulated as three questions: (1) What is gain from nature, the protocol may not actually work effec- the importance of taxonomy in contemporaneous and future tively. The notion of currently freely accessible digital se- science and society? (2) An increasing methodological gap in quence information (DSI) to become subject to the protocol, alpha taxonomy: challenge or opportunity? (3) The Nagoya even after previous publication, is misguided and conflicts Protocol: improvement or impediment to the science of tax- with the guidelines for ethical scientific conduct. Through onomy? The importance of taxonomy in society is illustrated its implementation of the Nagoya Protocol, Colombia has using the example of popular field guides and digital me- set a welcome precedence how to exempt taxonomic and dia, a billion-dollar business, arguing that the desire to name systematic research from “access to genetic resources”, and species is an intrinsic feature of the cognitive component of hopefully other biodiversity-rich countries will follow this nature connectedness of humans. -
Succession of Crustose Coralline Red Algae (Rhodophyta) on Coralgal Reefs Exposed to Physical Disturbance in the Southwest Atlantic
Helgol Mar Res (2013) 67:687–696 DOI 10.1007/s10152-013-0354-3 ORIGINAL ARTICLE Succession of crustose coralline red algae (Rhodophyta) on coralgal reefs exposed to physical disturbance in the southwest Atlantic Rodrigo Mariath • Rafael Riosmena Rodriguez • Marcia A. O. Figueiredo Received: 4 November 2011 / Revised: 25 February 2013 / Accepted: 3 April 2013 / Published online: 14 May 2013 Ó Springer-Verlag Berlin Heidelberg and AWI 2013 Abstract Biological and physical disturbances create the abundant. Physical disturbance increased crust recruitment conditions for species succession in any biological eco- and the low-light environment created by sediments. The system. In particular, coral reefs are susceptible to this data demonstrated coexistence among crustose coralline process because of the complexity of their ecological species and a tolerance to physical disturbance, which relationships. In the southwest Atlantic, nearshore reefs are seemed to favor the thinner crusts of P. conicum over mostly coated by a thin layer of coralline crusts rather than thick-crust species during succession. The succession pat- stony corals. However, little is known about the succession tern observed in this subtropical Brazilian coral reef differs of crustose coralline algae. We studied this process by from that described for shallow tropical reef communities. means of a series of experimental and control discs exposed to physical disturbance. Our results showed that Keywords CCA Á Coral reef Á Benthic communities Á the dominant species in natural conditions, Pneophyllum Brazil conicum, had early recruits and later became dominant on the discs, replicating the community structure of the actual reef. This species had mature reproductive structures and Introduction available spores from the beginning of the colonization experiments. -
Tropical Coralline Algae (Diurnal Response)
Burdett, Heidi L. (2013) DMSP dynamics in marine coralline algal habitats. PhD thesis. http://theses.gla.ac.uk/4108/ Copyright and moral rights for this thesis are retained by the author A copy can be downloaded for personal non-commercial research or study This thesis cannot be reproduced or quoted extensively from without first obtaining permission in writing from the Author The content must not be changed in any way or sold commercially in any format or medium without the formal permission of the Author When referring to this work, full bibliographic details including the author, title, awarding institution and date of the thesis must be given Glasgow Theses Service http://theses.gla.ac.uk/ [email protected] DMSP Dynamics in Marine Coralline Algal Habitats Heidi L. Burdett MSc BSc (Hons) University of Plymouth Submitted in fulfilment of the requirements for the Degree of Doctor of Philosophy School of Geographical and Earth Sciences College of Science and Engineering University of Glasgow March 2013 © Heidi L. Burdett, 2013 ii Dedication In loving memory of my Grandads; you may not get to see this in person, but I hope it makes you proud nonetheless. John Hewitson Burdett 1917 – 2012 and Denis McCarthy 1923 - 1998 Heidi L. Burdett March 2013 iii Abstract Dimethylsulphoniopropionate (DMSP) is a dimethylated sulphur compound that appears to be produced by most marine algae and is a major component of the marine sulphur cycle. The majority of research to date has focused on the production of DMSP and its major breakdown product, the climatically important gas dimethylsulphide (DMS) (collectively DMS/P), by phytoplankton in the open ocean. -
On the Fauna of Corallina Officinalis L
T~' Lt CL i:cJ:> i \lvVl Le (/Vl k'>~tj ; U B. 1> ! "I't,:<A.t.>U-'> k' If'/, t S'(,-.'-c k' "L K~. /3<- r-~-0-l,\ 2 Cf/.y - I:.:i( li--re. J)O"l/l,,- \.-1,\_ (;,..-:' H._ c>'(, HOVEDFAGSOPPGAVE I MARIN ZOOLOGI T.IL MAT.EMAT lSK-NATJJRVIT.ENSKAP EL la. EMBETSEKSAMEN ON THE FAUNA OF CORALLINA OFFlCINALIS L.' by Are Dommasnes CONTENTS Page; ABSTRACT 1 INTRODUCTIOt-l 1 THE LOCALITIES 2 THE GROWTH TYPES OF CORALLINA OFFICINALIS 5 TEMPERATURE AND SALINITY 6 COLLECTION AND EXAMINATION OF THE SAMPLES 7 THE FAUNA 9 Foraminifera 9 Cnidaria 10 Turbellaria 10 Nemertini 10 Nematoda 10 Polychaeta 11 Harpacticoida 13 Ostracoda 13 Isopoda 14 Tanaidacea 16 Amphipoda 16 Decapoda 19 Insecta 20 Halacaridae 20 Pycnogonida 20 Gastropoda 20 Bivalvia 22 Bryozoa 24 Echinodermata 25 Ascidiacea 25 DISCUSSION 26 The size of the animals 26 Effects of the wave exposure 27 Food and feeding-biology 29 Predation from animals living outside the Corallina growth 33 SOME COMMENTS, A~D SUGGESTIONS FOR FUTURE RESEARCH ON THE FAUNA OF CORALLIlIJA OFFICINALIS 34 SUMJ.VIARY 36 ACKNOWLEDGEMENTS 37 REFERENCES 38 ABSTRACT The fauna of Corallina officinalis has been studied at three localities south of Bergen, Norway. A list of species is given. A distinct distribution pattern is shown for some species, and this is discussed with reference to the wave exposure. The feeding-biology of the fauna is also discussed and some suggestions are given for future research on the fauna of Corallina officinalis. -I NTRODUCT I01~ When this rese~rch work started, my intention was to find (1) which animals lived in the Qorallina growths (2) how the fauna varied with wave exposure (3) how the fauna varied with depth and (4) the seasonal variations during the year. -
Morphology-Anatomy of Mesophyllum Macroblastum (Hapalidiaceae, Corallinales, Rhodophyta) in the Northern Adriatic Sea and a Key to Mediterranean Species of the Genus
Cryptogamie, Algologie, 2011, 32 (3): 223-242 © 2011 Adac. Tous droits réservés Morphology-anatomy of Mesophyllum macroblastum (Hapalidiaceae, Corallinales, Rhodophyta) in the Northern Adriatic Sea and a key to Mediterranean species of the genus Sara KALEB a, Annalisa FALACE a*, Gianfranco SARTONI b & William WOELKERLING c a Department of Life Science, University of Trieste, Italy b Department of Vegetal Biology, University of Florence, Italy c Department of Botany, La Trobe University, Bundoora, Victoria, Australia (Received 13 May 2010, accepted 15 October 2010) Abstract – The coralline red alga Mesophyllum (Hapalidiaceae) is recorded for the first time from the Gulf of Trieste (Northern Adriatic Sea) and gametangial plants of M. macro- blastum are recorded for the first time from the Mediterranean Sea. A morphological- anatomical account is provided, including comparisons with specimens from the western coast of Italy and with published data. Distribution and habitat information, comparison with Mediterranean species of Mesophyllum, and a dichotomous key to Mediterranean spe- cies are included along with brief comments on other species in the genus known to produce volcano-like tetrasporangial conceptacles. Corallinales / Hapalidiaceae / Mediterranean Sea / Mesophyllum macroblastum / Northern Adriatic / taxonomy Résumé – Le genre Mesophyllum (Hapalidiaceae), est signalé pour la première signali- sation pour le Gulf de Trieste (Nord Adriatique) et un pied gamétangial de Mesophyllum macroblastum (Foslie) Adey est observé pour la première fois en Méditerranée. M. macro- blastum est décrit et comparé avec des spécimens récoltés sur le littoral occidental de l’Italie. La distribution et des informations sur l’habitat, autant que la comparaison avec les espèces Méditerranéen de Mesophyllum sont reportées. -
Sequencing Type Material Resolves the Identity and Distribution of the Generitype Lithophyllum Incrustans, and Related European Species L
J. Phycol. 51, 791–807 (2015) © 2015 Phycological Society of America DOI: 10.1111/jpy.12319 SEQUENCING TYPE MATERIAL RESOLVES THE IDENTITY AND DISTRIBUTION OF THE GENERITYPE LITHOPHYLLUM INCRUSTANS, AND RELATED EUROPEAN SPECIES L. HIBERNICUM AND L. BATHYPORUM (CORALLINALES, RHODOPHYTA)1 Jazmin J. Hernandez-Kantun2 Botany Department, National Museum of Natural History, Smithsonian Institution, MRC 166 PO Box 37012, Washington District of Columbia, USA Irish Seaweed Research Group, Ryan Institute, National University of Ireland, University Road, Galway Ireland Fabio Rindi Dipartimento di Scienze della Vita e dell’Ambiente, Universita Politecnica delle Marche, Via Brecce Bianche, Ancona 60131, Italy Walter H. Adey Botany Department, National Museum of Natural History, Smithsonian Institution, MRC 166 PO Box 37012, Washington District of Columbia, USA Svenja Heesch Irish Seaweed Research Group, Ryan Institute, National University of Ireland, University Road, Galway Ireland Viviana Pena~ BIOCOST Research Group, Departamento de Bioloxıa Animal, Bioloxıa Vexetal e Ecoloxıa, Facultade de Ciencias, Universidade da Coruna,~ Campus de A Coruna,~ A Coruna~ 15071, Spain Equipe Exploration, Especes et Evolution, Institut de Systematique, Evolution, Biodiversite, UMR 7205 ISYEB CNRS, MNHN, UPMC, EPHE, Museum National d’Histoire Naturelle (MNHN), Sorbonne Universites, 57 rue Cuvier CP 39, Paris 75005, France Phycology Research Group, Ghent University, Krijgslaan 281, Building S8, Ghent 9000, Belgium Line Le Gall Equipe Exploration, Especes et Evolution, Institut de Systematique, Evolution, Biodiversite, UMR 7205 ISYEB CNRS, MNHN, UPMC, EPHE, Museum National d’Histoire Naturelle (MNHN), Sorbonne Universites, 57 rue Cuvier CP 39, Paris 75005, France and Paul W. Gabrielson Department of Biology and Herbarium, University of North Carolina, Chapel Hill, Coker Hall CB 3280, Chapel Hill, North Carolina 27599-3280, USA DNA sequences from type material in the belonging in Lithophyllum. -
Some Considerations for Analyzing Biodiversity Using Integrative
Some considerations for analyzing biodiversity using integrative metagenomics and gene networks Lucie Bittner, Sébastien Halary, Claude Payri, Corinne Cruaud, Bruno de Reviers, Philippe Lopez, Eric Bapteste To cite this version: Lucie Bittner, Sébastien Halary, Claude Payri, Corinne Cruaud, Bruno de Reviers, et al.. Some considerations for analyzing biodiversity using integrative metagenomics and gene networks. Biology Direct, BioMed Central, 2010, 5 (5), pp.47. 10.1186/1745-6150-5-47. hal-02922363 HAL Id: hal-02922363 https://hal.archives-ouvertes.fr/hal-02922363 Submitted on 26 Aug 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Bittner et al. Biology Direct 2010, 5:47 http://www.biology-direct.com/content/5/1/47 HYPOTHESIS Open Access Some considerations for analyzing biodiversity using integrative metagenomics and gene networks Lucie Bittner1†, Sébastien Halary2†, Claude Payri3, Corinne Cruaud4, Bruno de Reviers1, Philippe Lopez2, Eric Bapteste2* Abstract Background: Improving knowledge of biodiversity will benefit conservation biology, enhance bioremediation studies, and could lead to new medical treatments. However there is no standard approach to estimate and to compare the diversity of different environments, or to study its past, and possibly, future evolution. -
Jania Crassa Lamouroux (Rhodophyta, Corauinales), Nome Correto Para As Referencias De Jania Rubens Lamouroux No Brasil
Hoehnea 30(2): 111-120, 3 fig., 2003 Jania crassa Lamouroux (Rhodophyta, CoraUinales), nome correto para as referencias de Jania rubens Lamouroux no Brasil l 2 Carlos Wallace do Nascimento Moura ,3 e Silvia Maria Pita de Beauclair Guimaraes Recebido: 07.05.2002; aceito: 13.04.2003 ABSTRACT - (Jania crassa Lamouroux (Corallinales, Rhodophyta), correct name for the references of iania rubens Lamouroux in Brazil). By reviewing material ofgeniculated coralline algae from Brazil we found that a robust taxon occurring from north of Espirito Santo to Rio Grande do Sui States had erroneously been identi fted in the Brazilian literature as iania rubens (Linnaeus) Lamouroux. Detailed study of this material and comparison with similar species led us to identify it as iania crassa Lamouroux. It presents a dioecious erect epilithic thallus up to 9 cm length, large basal disc, laxly dichotomous branches, intergenicula long, 200-300(-400) J.lm wide and 6-20(40) tiers of medulary cells and genicula 180-240 J.lm long. These findings led us to establish that iania crassa presents a amphi-Atlantic distribution occurring on the African coast, Ac;:ores Arquipelago and Brazil. A comparison with related taxa is presented, stressing the need to review all the references of1. rubens to the Atlantic Ocean. Key words: iania crassa, taxonomy, articulated coralline algae, Western Atlantic RESUMO - (Jania crassa Lamouroux (Rhodophyta, Corallinales), nome correto para as referencias deiania rubens Lamouroux no Brasil). Ao rever 0 material de coralimiceas com geniculo do litoral do Brasil veriftcou-se a ocorrencia de uma especie do genero iania. 1. crassa Lamouroux. -
Impacts of Altered Physical and Biotic Conditions in Rocky Intertidal Systems: Implications for the Structure and Functioning of Complex Macroalgal Assemblages
Impacts of altered physical and biotic conditions in rocky intertidal systems: implications for the structure and functioning of complex macroalgal assemblages A thesis submitted in partial fulfilment of the requirements for the Degree of Doctor of Philosophy at the University of Canterbury, New Zealand Tommaso Alestra 2014 Abstract Complex biogenic habitats created by large canopy-forming macroalgae on intertidal and shallow subtidal rocky reefs worldwide are increasingly affected by degraded environmental conditions at local scales and global climate-driven changes. A better understanding of the mechanisms underlying the impacts of complex suites of anthropogenic stressors on algal forests is essential for the conservation and restoration of these habitats and of their ecological, economic and social values. This thesis tests physical and biological mechanisms underlying the impacts of different forms of natural and human-related disturbance on macroalgal assemblages dominated by fucoid canopies along the east coast of the South Island of New Zealand. A field removal experiment was initially set up to test assemblage responses to mechanical perturbations of increasing severity, simulating the impacts of disturbance agents affecting intertidal habitats such as storms and human trampling. Different combinations of assemblage components (i.e., canopy, mid-canopy and basal layer) were selectively removed, from the thinning of the canopy to the destruction of the entire assemblage. The recovery of the canopy-forming fucoids Hormosira banksii and Cystophora torulosa was affected by the intensity of the disturbance. For both species, even a 50% thinning had impacts lasting at least eighteen months, and recovery trajectories were longer following more intense perturbations. Independently of assemblage diversity and composition at different sites and shore heights, the recovery of the canopy relied entirely on the increase in abundance of these dominant fucoids in response to disturbance, indicating that functional redundancy is limited in this system. -
Snps Reveal Geographical Population Structure of Corallina Officinalis (Corallinaceae, Rhodophyta)
SNPs reveal geographical population structure of Corallina officinalis (Corallinaceae, Rhodophyta) Chris Yesson1, Amy Jackson2, Steve Russell2, Christopher J. Williamson2,3 and Juliet Brodie2 1 Institute of Zoology, Zoological Society of London, London, UK 2 Natural History Museum, Department of Life Sciences, London, UK 3 Schools of Biological and Geographical Sciences, University of Bristol, Bristol, UK CONTACT: Chris Yesson. Email: [email protected] 1 Abstract We present the first population genetics study of the calcifying coralline alga and ecosystem engineer Corallina officinalis. Eleven novel SNP markers were developed and tested using Kompetitive Allele Specific PCR (KASP) genotyping to assess the population structure based on five sites around the NE Atlantic (Iceland, three UK sites and Spain), spanning a wide latitudinal range of the species’ distribution. We examined population genetic patterns over the region using discriminate analysis of principal components (DAPC). All populations showed significant genetic differentiation, with a marginally insignificant pattern of isolation by distance (IBD) identified. The Icelandic population was most isolated, but still had genotypes in common with the population in Spain. The SNP markers presented here provide useful tools to assess the population connectivity of C. officinalis. This study is amongst the first to use SNPs on macroalgae and represents a significant step towards understanding the population structure of a widespread, habitat forming coralline alga in the NE Atlantic. KEYWORDS Marine red alga; Population genetics; Calcifying macroalga; Corallinales; SNPs; Corallina 2 Introduction Corallina officinalis is a calcified geniculate (i.e. articulated) coralline alga that is wide- spread on rocky shores in the North Atlantic (Guiry & Guiry, 2017; Brodie et al., 2013; Williamson et al., 2016).