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Downloaded from Birdtree.Org [48] to Take Into Account Phylogenetic Uncertainty in the Comparative Analyses [67]
bioRxiv preprint doi: https://doi.org/10.1101/586362; this version posted November 19, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. RESEARCH ARTICLE Open Access Distribution of iridescent colours in Open Peer-Review hummingbird communities results Open Data from the interplay between Open Code selection for camouflage and communication Cite as: preprint Posted: 15th November 2019 Hugo Gruson1, Marianne Elias2, Juan L. Parra3, Christine Recommender: Sébastien Lavergne Andraud4, Serge Berthier5, Claire Doutrelant1, & Doris Reviewers: Gomez1,5 XXX Correspondence: 1 [email protected] CEFE, Univ Montpellier, CNRS, Univ Paul Valéry Montpellier 3, EPHE, IRD, Montpellier, France 2 ISYEB, CNRS, MNHN, Sorbonne Université, EPHE, 45 rue Buffon CP50, Paris, France 3 Grupo de Ecología y Evolución de Vertrebados, Instituto de Biología, Universidad de Antioquia, Medellín, Colombia 4 CRC, MNHN, Ministère de la Culture et de la Communication, CNRS, Paris, France 5 INSP, Sorbonne Université, CNRS, Paris, France This article has been peer-reviewed and recommended by Peer Community In Evolutionary Biology Peer Community In Evolutionary Biology 1 of 33 bioRxiv preprint doi: https://doi.org/10.1101/586362; this version posted November 19, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Abstract Identification errors between closely related, co-occurring, species may lead to misdirected social interactions such as costly interbreeding or misdirected aggression. This selects for divergence in traits involved in species identification among co-occurring species, resulting from character displacement. -
Hummingbird (Family Trochilidae) Research: Welfare-Conscious Study Techniques for Live Hummingbirds and Processing of Hummingbird Specimens
Special Publications Museum of Texas Tech University Number xx76 19xx January XXXX 20212010 Hummingbird (Family Trochilidae) Research: Welfare-conscious Study Techniques for Live Hummingbirds and Processing of Hummingbird Specimens Lisa A. Tell, Jenny A. Hazlehurst, Ruta R. Bandivadekar, Jennifer C. Brown, Austin R. Spence, Donald R. Powers, Dalen W. Agnew, Leslie W. Woods, and Andrew Engilis, Jr. Dedications To Sandra Ogletree, who was an exceptional friend and colleague. Her love for family, friends, and birds inspired us all. May her smile and laughter leave a lasting impression of time spent with her and an indelible footprint in our hearts. To my parents, sister, husband, and children. Thank you for all of your love and unconditional support. To my friends and mentors, Drs. Mitchell Bush, Scott Citino, John Pascoe and Bill Lasley. Thank you for your endless encouragement and for always believing in me. ~ Lisa A. Tell Front cover: Photographic images illustrating various aspects of hummingbird research. Images provided courtesy of Don M. Preisler with the exception of the top right image (courtesy of Dr. Lynda Goff). SPECIAL PUBLICATIONS Museum of Texas Tech University Number 76 Hummingbird (Family Trochilidae) Research: Welfare- conscious Study Techniques for Live Hummingbirds and Processing of Hummingbird Specimens Lisa A. Tell, Jenny A. Hazlehurst, Ruta R. Bandivadekar, Jennifer C. Brown, Austin R. Spence, Donald R. Powers, Dalen W. Agnew, Leslie W. Woods, and Andrew Engilis, Jr. Layout and Design: Lisa Bradley Cover Design: Lisa A. Tell and Don M. Preisler Production Editor: Lisa Bradley Copyright 2021, Museum of Texas Tech University This publication is available free of charge in PDF format from the website of the Natural Sciences Research Laboratory, Museum of Texas Tech University (www.depts.ttu.edu/nsrl). -
Reference File
References added since publication of 2007 CRC Handbook of Avian Body Masses Abadie, K. B., J. Pérez Z., and M. Valverde. 2006. Primer reporte de colonias del Martín Peruano Progne murphyi. Cotinga 24:99-101. Ackerman, J. T., J. Y. Takekawa, J. D. Bluso, J. L. Yee, and C. A. Eagles-Smith. 2008. Gender identification of Caspian Terns using external morphology and discriminant function analysis. Wilson Journal of Ornithology 120:378-383. Alarcos, S., C. de la Cruz, E. Solís, J. Valencia, and M. J. García-Baquero. 2007. Sex determination of Iberian Azure-winged Magpies Cyanopica cyanus cooki by discriminant analysis of external measurements. Ringing & Migration 23:211-216. Albayrak, T., A. Besnard, and A. Erdoğan. 2011. Morphometric variation and population relationships of Krüeper’s Nuthatch (Sitta krueperi) in Turkey. Wilson Journal of Ornithology 123:734-740. Aleixo, A., C. E. B. Portes, A. Whittaker, J. D. Weckstein, L. Pedreira Gonzaga, K. J. Zimmer, C. C. Ribas, and J. M. Bates. 2013. Molecular systematics and taxonomic revision of the Curve-billed Scythebill complex (Campylorhamphus procurvoides: Dendrocolaptidae), with description of a new species from western Amazonian Brazil. Pp. 253-257, In: del Hoyo, J., A Elliott, J. Sargatal, and D.A. Christie (eds). Handbook of the birds of the world. Special volume: new species and global index. Lynx Edicions, Barcelona, Spain. Volume 1. Alfano, A. 2014. Pygmy Nightjar (Nyctopolus hirundinaeus). Neotropical Birds Online (T.S. Schulenberg, ed.). Cornell Laboratory of Ornithology, Ithaca, NY. Alvarenga, H. M. F., E. Höfling, and L. F. Silveira. 2002. Notharchus swainsoni (Gray, 1846) é uma espécie válida. -
Threatened Birds of the Americas
TANAGER-FINCH Oreothraupis arremonops V/R10 This cloud-forest undergrowth species has a poorly known and patchy distribution in the West Andes of Colombia and in north-western Ecuador, with few recent records. However, large tracts of apparently suitable habitat remain in protected areas, the reason for its apparent rarity being essentially unknown. DISTRIBUTION The Tanager-finch (see Remarks 1) is known from just a few apparently disjunct areas on the West Andes in Antioquia, Valle, Cauca and Nariño departments, Colombia, and also from Imbabura and Pichincha provinces, north-western Ecuador, where localities (coordinates from Paynter and Traylor 1977, 1981) are as follows: Colombia (Antioquia) Hacienda Potreros (c.6°39’N 76°09’W; on the western slope of the West Andes, south-west of Frontino), where a male (in USNM) was taken at 1,980 m in June 1950 (also Carriker 1959); (Valle) in the region of Alto Anchicayá (c.3°37’N 76°53’W), where the species has fairly recently been recorded (Orejuela 1983); (Cauca) in the vicinity of Cerro Munchique (2°32’N 76°57’W), where the bird is regularly found on the western slope (Hilty and Brown 1986), specific localities including: La Costa (untraced, but c.10 km north of Cerro Munchique), where a female (in ANSP) was taken at 1,830 m in March 1938 (also Meyer de Schauensee 1948-1952), Cocal (2°31’N 77°00’W; north-west of Cerro Munchique), where two specimens were collected at 1,830 m (Chapman 1917a), El Tambo (2°25’N 76°49’W; on the east slope of the West Andes), whence come specimens taken at 1,370 -
Trends in Nectar Concentration and Hummingbird Visitation
SIT Graduate Institute/SIT Study Abroad SIT Digital Collections Independent Study Project (ISP) Collection SIT Study Abroad Fall 2016 Trends in Nectar Concentration and Hummingbird Visitation: Investigating different variables in three flowers of the Ecuadorian Cloud Forest: Guzmania jaramilloi, Gasteranthus quitensis, and Besleria solanoides Sophie Wolbert SIT Study Abroad Follow this and additional works at: https://digitalcollections.sit.edu/isp_collection Part of the Animal Studies Commons, Community-Based Research Commons, Environmental Studies Commons, Latin American Studies Commons, and the Plant Biology Commons Recommended Citation Wolbert, Sophie, "Trends in Nectar Concentration and Hummingbird Visitation: Investigating different variables in three flowers of the Ecuadorian Cloud Forest: Guzmania jaramilloi, Gasteranthus quitensis, and Besleria solanoides" (2016). Independent Study Project (ISP) Collection. 2470. https://digitalcollections.sit.edu/isp_collection/2470 This Unpublished Paper is brought to you for free and open access by the SIT Study Abroad at SIT Digital Collections. It has been accepted for inclusion in Independent Study Project (ISP) Collection by an authorized administrator of SIT Digital Collections. For more information, please contact [email protected]. Wolbert 1 Trends in Nectar Concentration and Hummingbird Visitation: Investigating different variables in three flowers of the Ecuadorian Cloud Forest: Guzmania jaramilloi, Gasteranthus quitensis, and Besleria solanoides Author: Wolbert, Sophie Academic -
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Journal of Caribbean Ornithology RESEARCH ARTICLE Vol. 33:1–14. 2020 Composition of bird community in Portachuelo Pass (Henri Pittier National Park, Venezuela) Cristina Sainz-Borgo Jhonathan Miranda Miguel Lentino Photo: Pedro Arturo Amaro Journal of Caribbean Ornithology jco.birdscaribbean.org ISSN 1544-4953 RESEARCH ARTICLE Vol. 33:1–14. 2020 birdscaribbean.org Composition of bird community in Portachuelo Pass (Henri Pittier National Park, Venezuela) Cristina Sainz-Borgo1, Jhonathan Miranda2, and Miguel Lentino3 Abstract The purpose of this study was to describe the composition of the bird community in Portachuelo Pass, located in Henri Pittier National Park, Venezuela. Portachuelo Pass is an important route for migratory birds between northern South America and the Southern Cone. During 11 months of sampling between 2010 and 2012, we captured 1,460 birds belonging to 125 identified species, 29 families, and 9 orders. The families with the highest relative abundance and species richness were Trochilidae and Thraupidae and the most common species were the Violet-chested Hummingbird (Sternoclyta cyanopectus), Olive-striped Flycatcher (Mionectes olivaceus), Plain-brown Woodcreeper (Dendrocincla fuliginosa), Orange-bellied Euphonia (Euphonia xanthogaster), Violet-fronted Brilliant (Heliodoxa leadbeateri), Vaux’s Swift (Chaetura vauxi), Red-eared Parakeet (Pyrrhura hoematotis), Golden-tailed Sapphire (Chrysuronia oenone), Black-hooded Thrush (Turdus olivater), and Gray-rumped Swift (Chaetura cinereiventris). These species represented 52.4% of total captures and 8.0% of identified species. We captured 5 endemic species and 8 migratory species. The months of greatest relative abundance and species richness were June and July 2010 and January 2011. Birds captured belonged to the following feeding guilds: insectivorous, nectarivorous-insectivorous, frugivorous, frugivorous-insectivorous, granivorous, frugivorous-folivorous, omnivorous, carnivorous, and frugivorous-graniv- orous. -
Assessing the Extinction Probability of the Purple-Winged Ground Dove, an Enigmatic Bamboo Specialist
fevo-09-624959 April 29, 2021 Time: 12:42 # 1 ORIGINAL RESEARCH published: 29 April 2021 doi: 10.3389/fevo.2021.624959 Assessing the Extinction Probability of the Purple-winged Ground Dove, an Enigmatic Bamboo Specialist Alexander C. Lees1,2*, Christian Devenish1, Juan Ignacio Areta3, Carlos Barros de Araújo4,5, Carlos Keller6, Ben Phalan7 and Luís Fábio Silveira8 1 Ecology and Environment Research Centre (EERC), Department of Natural Sciences, Manchester Metropolitan University, Manchester, United Kingdom, 2 Cornell Lab of Ornithology, Cornell University, Ithaca, NY, United States, 3 Laboratorio de Ecología, Comportamiento y Sonidos Naturales, Instituto de Bio y Geociencias del Noroeste Argentino (IBIGEO-CONICET), Salta, Argentina, 4 Programa de Pós-Graduação em Ecologia e Monitoramento Ambiental, Centro de Ciências Aplicadas e Educação, Universidade Federal da Paraíba, Rio Tinto, Brazil, 5 Programa de Pós-graduação em Ciências Biológicas, Universidade Estadual de Londrina, Londrina, Brazil, 6 Independent Researcher, Rio de Janeiro, Brazil, 7 Centre for Conservation of Atlantic Forest Birds, Parque das Aves, Foz do Iguaçu, Brazil, 8 Seção de Aves, Museu de Zoologia da Universidade de São Paulo, São Paulo, Brazil The continued loss, fragmentation, and degradation of forest habitats are driving an Edited by: extinction crisis for tropical and subtropical bird species. This loss is particularly acute in Bruktawit Abdu Mahamued, the Atlantic Forest of South America, where it is unclear whether several endemic bird Kotebe Metropolitan University (KMU), Ethiopia species are extinct or extant. We collate and model spatiotemporal distributional data Reviewed by: for one such “lost” species, the Purple-winged Ground Dove Paraclaravis geoffroyi, John Woinarski, a Critically Endangered endemic of the Atlantic Forest biome, which is nomadic Charles Darwin University, Australia Sam Turvey, and apparently dependent on masting bamboo stands. -
ECUADOR: the Andes Introtour and High Andes Extension 10Th- 19Th November 2019
Tropical Birding - Trip Report Ecuador: The Andes Introtour, November 2019 A Tropical Birding SET DEPARTURE tour ECUADOR: The Andes Introtour and High Andes Extension th th 10 - 19 November 2019 TOUR LEADER: Jose Illanes Report and photos by Jose Illanes Andean Condor from Antisana National Park This is one Tropical Birding’s most popular tours and I have guided it numerous times. It’s always fun and offers so many memorable birds. Ecuador is a wonderful country to visit with beautiful landscapes, rich culture, and many friendly people that you will meet along the way. Some of the highlights picked by the group were Andean Condor, White-throated Screech-Owl, Giant Antpitta, Jameson’s Snipe, Giant Hummingbird, Black-tipped Cotinga, Sword-billed Hummingbird, Club-winged Manakin, Lyre-tailed Nightjar, Lanceolated Monklet, Flame-faced Tanager, Toucan Barbet, Violet-tailed Sylph, Undulated Antpitta, Andean Gull, Blue-black Grassquit, and the attractive Blue-winged Mountain-Tanager. Our total species count on the trip (including the extension) was around 368 seen and 31 heard only. www.tropicalbirding.com +1-409-515-9110 [email protected] p.1 Tropical Birding - Trip Report Ecuador: The Andes Introtour, November 2019 Torrent Duck at Guango Lodge on the extension November 11: After having arrived in Quito the night before, we had our first birding this morning in the Yanacocha Reserve owned by the Jocotoco Foundation, which is not that far from Ecuador’s capital. Our first stop was along the entrance road near a water pumping station, where we started out by seeing Streak- throated Bush-Tyrant, Brown-backed Chat-Tyrant, Cinereous Conebill, White-throated Tyrannulet, a very responsive Superciliaried Hemispingus, Black-crested Warbler, and the striking Crimson-mantled Woodpecker. -
AC27 Doc. 12.5
Original language: English AC27 Doc. 12.5 CONVENTION ON INTERNATIONAL TRADE IN ENDANGERED SPECIES OF WILD FAUNA AND FLORA ____________ Twenty-seventh meeting of the Animals Committee Veracruz (Mexico), 28 April – 3 May 2014 Interpretation and implementation of the Convention Review of Significant Trade in specimens of Appendix-II species [Resolution Conf. 12.8 (Rev. CoP13)] SELECTION OF SPECIES FOR TRADE REVIEWS FOLLOWING COP16 1. This document has been prepared by the Secretariat. 2. In Resolution Conf. 12.8 (Rev. CoP13) on Review of Significant Trade in specimens of Appendix-II species, the Conference of the Parties: DIRECTS the Animals and Plants Committees, in cooperation with the Secretariat and experts, and in consultation with range States, to review the biological, trade and other relevant information on Appendix-II species subject to significant levels of trade, to identify problems and solutions concerning the implementation of Article IV, paragraphs 2 (a), 3 and 6 (a)... 3. In accordance with paragraph a) of that Resolution under the section Regarding conduct of the Review of Significant Trade, the Secretariat requested UNEP-WCMC to produce a summary from the CITES Trade Database of annual report statistics showing the recorded net level of exports for Appendix-II species over the five most recent years. Its report is attached as Annex 1 (English only) to the present document. The raw data used to prepare this summary are available in document AC27 Inf. 2. 4. Paragraph b) of the same section directs the Animals Committee, on the basis of recorded trade levels and information available to it, the Secretariat, Parties or other relevant experts, to select species of priority concern for review (whether or not such species have been the subject of a previous review). -
Dated Phylogenetic and Biogeographic Inference of Migratory Behavior in Bee Hummingbirds Yuyini Licona-Vera and Juan Francisco Ornelas*
Licona-Vera and Ornelas BMC Evolutionary Biology (2017) 17:126 DOI 10.1186/s12862-017-0980-5 RESEARCH ARTICLE Open Access The conquering of North America: dated phylogenetic and biogeographic inference of migratory behavior in bee hummingbirds Yuyini Licona-Vera and Juan Francisco Ornelas* Abstract Background: Geographical and temporal patterns of diversification in bee hummingbirds (Mellisugini) were assessed with respect to the evolution of migration, critical for colonization of North America. We generated a dated multilocus phylogeny of the Mellisugini based on a dense sampling using Bayesian inference, maximum- likelihood and maximum parsimony methods, and reconstructed the ancestral states of distributional areas in a Bayesian framework and migratory behavior using maximum parsimony, maximum-likelihood and re-rooting methods. Results: All phylogenetic analyses confirmed monophyly of the Mellisugini and the inclusion of Atthis, Calothorax, Doricha, Eulidia, Mellisuga, Microstilbon, Myrmia, Tilmatura,andThaumastura. Mellisugini consists of two clades: (1) South American species (including Tilmatura dupontii), and (2) species distributed in North and Central America and the Caribbean islands. The second clade consists of four subclades: Mexican (Calothorax, Doricha)and Caribbean (Archilochus, Calliphlox, Mellisuga)sheartails,Calypte,andSelasphorus (incl. Atthis). Coalescent-based dating places the origin of the Mellisugini in the mid-to-late Miocene, with crown ages of most subclades in the early Pliocene, and subsequent species splits in the Pleistocene. Bee hummingbirds reached western North America by the end of the Miocene and the ancestral mellisuginid (bee hummingbirds) was reconstructed as sedentary, with four independent gains of migratory behavior during the evolution of the Mellisugini. Conclusions: Early colonization of North America and subsequent evolution of migration best explained biogeographic and diversification patterns within the Mellisugini. -
Phylogenetic Patterns in the Trochilidae
The Auk 115(1):105-118, 1998 PHYLOGENETIC PATTERNS IN THE TROCHILIDAE JOHN A. GERWIN•'2 AND ROBERTM. ZINK L3 •Museumof NaturalScience and Department of Zoologyand Physiology, LouisianaState University, Baton Rouge, Louisiana 70803, USA ABSTRACT.--Althoughmany aspectsof hummingbirdbiology have been studied, few re- centanalyses of higher-levelsystematic relationships exist. Based on morphology, it hasbeen hypothesizedthat the Trochilidaeincludes six majorclades. We used starch-gel electropho- resisto constructand testphylogenetic hypotheses for representativesof the six clades,us- ing two speciesof swifts(Apodidae) as outgroups. Of 45 loci scored,38 werepolymorphic. The averageNei's geneticdistance (D) among14 hummingbirdtaxa was 0.625;D averaged 1.61between the swiftsand hummingbirds.These distances are large,and are consistent with othernonpasserine groups, suggesting that hummingbird taxa are relativelyold. Phy- logeneticanalyses generally were consistentwith the hypothesisthat hermitsare a sister groupto all othertrochilines. Within the Trochilinae, two broad groups are recognized, here calledtrochiline-A and B, whichcorrespond to the morphologicallydetermined "primitive" and"advanced" trochiline groups of Zusiand Bentz (1982). Androdon aequatorialis is genet- ically distinctbut generallyaligns with the trochiline-Agroup. Within the trochiline-B group,four radiationshypothesized by Zusi (pers.comm.), here called Bee, Amazilia ("Em- eralds"),Andean, and High Andean,were corroboratedby our analyses.Our distanceanal- ysissuggests a phylogeneticpattern -
Alpha Codes for 2168 Bird Species (And 113 Non-Species Taxa) in Accordance with the 62Nd AOU Supplement (2021), Sorted Taxonomically
Four-letter (English Name) and Six-letter (Scientific Name) Alpha Codes for 2168 Bird Species (and 113 Non-Species Taxa) in accordance with the 62nd AOU Supplement (2021), sorted taxonomically Prepared by Peter Pyle and David F. DeSante The Institute for Bird Populations www.birdpop.org ENGLISH NAME 4-LETTER CODE SCIENTIFIC NAME 6-LETTER CODE Highland Tinamou HITI Nothocercus bonapartei NOTBON Great Tinamou GRTI Tinamus major TINMAJ Little Tinamou LITI Crypturellus soui CRYSOU Thicket Tinamou THTI Crypturellus cinnamomeus CRYCIN Slaty-breasted Tinamou SBTI Crypturellus boucardi CRYBOU Choco Tinamou CHTI Crypturellus kerriae CRYKER White-faced Whistling-Duck WFWD Dendrocygna viduata DENVID Black-bellied Whistling-Duck BBWD Dendrocygna autumnalis DENAUT West Indian Whistling-Duck WIWD Dendrocygna arborea DENARB Fulvous Whistling-Duck FUWD Dendrocygna bicolor DENBIC Emperor Goose EMGO Anser canagicus ANSCAN Snow Goose SNGO Anser caerulescens ANSCAE + Lesser Snow Goose White-morph LSGW Anser caerulescens caerulescens ANSCCA + Lesser Snow Goose Intermediate-morph LSGI Anser caerulescens caerulescens ANSCCA + Lesser Snow Goose Blue-morph LSGB Anser caerulescens caerulescens ANSCCA + Greater Snow Goose White-morph GSGW Anser caerulescens atlantica ANSCAT + Greater Snow Goose Intermediate-morph GSGI Anser caerulescens atlantica ANSCAT + Greater Snow Goose Blue-morph GSGB Anser caerulescens atlantica ANSCAT + Snow X Ross's Goose Hybrid SRGH Anser caerulescens x rossii ANSCAR + Snow/Ross's Goose SRGO Anser caerulescens/rossii ANSCRO Ross's Goose