A Taxonomic Revision of Cheilodactylidae and Latridae (Centrarchiformes: Cirrhitoidei) Using Morphological and Genomic Characters
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Comprehensive Phylogeny of Ray-Finned Fishes (Actinopterygii) Based on Transcriptomic and Genomic Data
Comprehensive phylogeny of ray-finned fishes (Actinopterygii) based on transcriptomic and genomic data Lily C. Hughesa,b,1,2, Guillermo Ortía,b,1,2, Yu Huangc,d,1, Ying Sunc,e,1, Carole C. Baldwinb, Andrew W. Thompsona,b, Dahiana Arcilaa,b, Ricardo Betancur-R.b,f, Chenhong Lig, Leandro Beckerh, Nicolás Bellorah, Xiaomeng Zhaoc,d, Xiaofeng Lic,d, Min Wangc, Chao Fangd, Bing Xiec, Zhuocheng Zhoui, Hai Huangj, Songlin Chenk, Byrappa Venkateshl,2, and Qiong Shic,d,2 aDepartment of Biological Sciences, The George Washington University, Washington, DC 20052; bNational Museum of Natural History, Smithsonian Institution, Washington, DC 20560; cShenzhen Key Lab of Marine Genomics, Guangdong Provincial Key Lab of Molecular Breeding in Marine Economic Animals, Beijing Genomics Institute Academy of Marine Sciences, Beijing Genomics Institute Marine, Beijing Genomics Institute, 518083 Shenzhen, China; dBeijing Genomics Institute Education Center, University of Chinese Academy of Sciences, 518083 Shenzhen, China; eChina National GeneBank, Beijing Genomics Institute-Shenzhen, 518120 Shenzhen, China; fDepartment of Biology, University of Puerto Rico–Rio Piedras, San Juan 00931, Puerto Rico; gKey Laboratory of Exploration and Utilization of Aquatic Genetic Resources, Shanghai Ocean University, Ministry of Education, 201306 Shanghai, China; hLaboratorio de Ictiología y Acuicultura Experimental, Universidad Nacional del Comahue–CONICET, 8400 Bariloche, Argentina; iProfessional Committee of Native Aquatic Organisms and Water Ecosystem, China Fisheries Association, 100125 Beijing, China; jCollege of Life Science and Ecology, Hainan Tropical Ocean University, 572022 Sanya, China; kYellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, 266071 Qingdao, China; and lComparative Genomics Laboratory, Institute of Molecular and Cell Biology, A*STAR, Biopolis, 138673 Singapore Edited by Scott V. -
Reef Fish Monitoring Te Tapuwae O Rongokako Marine Reserve
Reef Fish Monitoring Te Tapuwae o Rongokako Marine Reserve Technical Support - Marine East Coast Hawke’s Bay Conservancy Debbie Freeman OCTOBER 2005 Published By Department of Conservation East Coast Hawkes Bay Conservancy PO Box 668 Gisborne 4040, New Zeland Cover: Banded wrasse Photo: I. Nilsson Title page: Koheru Photo: M. Blackwell Acknowledgments: Blue maomao Photo: J. Quirk © Copyright October 2005, New Zealand Department of Conservation ISSN 1175-026X ISBN 978-0-478-14143-6 (paperback) ISBN 978-0-478-14193-1 (Web pdf) Techincal Support Series Number: 25 In the interest of forest conservation, DOC Science Publishing supports paperless electronic publishing. When printing, recycled paper is used wherever possible. C ontents Abstract 4 Introduction 5 Methods 6 Results 10 Discussion 20 Fish fauna 20 Protection effects 21 Reserve age and design 21 Experimental design and monitoring methods 22 Illegal fishing 23 Environmental factors 24 Acknowledgements 24 References 25 Abstract Reef fish monitoring was undertaken within and surrounding Te Tapuwae o Rongokako Marine Reserve, on the North Island’s East Coast, between 2000 and 2004. The objective of the monitoring was to describe the reef fish communities and to establish whether populations within the marine reserve were demonstrating any changes in abundance or size that could be attributable to the removal of fishing pressure. The underwater visual census method was used to survey the four lo- cations (marine reserve and three non-reserve locations). It was found that all four locations were characterised by moderate densities of spot- ties, scarlet wrasse and reef-associated planktivores such as blue maomao, sweep and butterfly perch. -
Global Patterns of Ranavirus Detections
NOTE Global patterns of ranavirus detections Jesse L. Brunnera*, Deanna H. Olsonb, Matthew J. Grayc, Debra L. Millerd, and Amanda L.J. Duffuse aSchool of Biological Sciences, Washington State University, Pullman, WA 99164-4236, USA; bUSDA Forest Service, Pacific Northwest Research Station, Corvallis, OR 97331-8550, USA; cDepartment of Forestry, Wildlife and Fisheries, University of Tennessee Institute of Agriculture, Knoxville, TN 37996-4563, USA; dCollege of Veterinary Medicine, University of Tennessee Institute of Agriculture, Knoxville, TN 37996-4563, USA; eDepartment of Natural Sciences, Gordon State College, Barnesville, GA 30204, USA *[email protected] Abstract Ranaviruses are emerging pathogens of poikilothermic vertebrates. In 2015 the Global Ranavirus Reporting System (GRRS) was established as a centralized, open access, online database for reports of the presence (and absence) of ranavirus around the globe. The GRRS has multiple data layers (e.g., location, date, host(s) species, and methods of detection) of use to those studying the epidemiol- ogy, ecology, and evolution of this group of viruses. Here we summarize the temporal, spatial, diag- nostic, and host-taxonomic patterns of ranavirus reports in the GRRS. The number, distribution, and host diversity of ranavirus reports have increased dramatically since the mid 1990s, presumably in response to increased interest in ranaviruses and the conservation of their hosts, and also the availability of molecular diagnostics. Yet there are clear geographic and taxonomic biases among the OPEN ACCESS reports. We encourage ranavirus researchers to add their studies to the portal because such collation can provide collaborative opportunities and unique insights to our developing knowledge of this For personal use only. -
Pacific Plate Biogeography, with Special Reference to Shorefishes
Pacific Plate Biogeography, with Special Reference to Shorefishes VICTOR G. SPRINGER m SMITHSONIAN CONTRIBUTIONS TO ZOOLOGY • NUMBER 367 SERIES PUBLICATIONS OF THE SMITHSONIAN INSTITUTION Emphasis upon publication as a means of "diffusing knowledge" was expressed by the first Secretary of the Smithsonian. In his formal plan for the Institution, Joseph Henry outlined a program that included the following statement: "It is proposed to publish a series of reports, giving an account of the new discoveries in science, and of the changes made from year to year in all branches of knowledge." This theme of basic research has been adhered to through the years by thousands of titles issued in series publications under the Smithsonian imprint, commencing with Smithsonian Contributions to Knowledge in 1848 and continuing with the following active series: Smithsonian Contributions to Anthropology Smithsonian Contributions to Astrophysics Smithsonian Contributions to Botany Smithsonian Contributions to the Earth Sciences Smithsonian Contributions to the Marine Sciences Smithsonian Contributions to Paleobiology Smithsonian Contributions to Zoo/ogy Smithsonian Studies in Air and Space Smithsonian Studies in History and Technology In these series, the Institution publishes small papers and full-scale monographs that report the research and collections of its various museums and bureaux or of professional colleagues in the world cf science and scholarship. The publications are distributed by mailing lists to libraries, universities, and similar institutions throughout the world. Papers or monographs submitted for series publication are received by the Smithsonian Institution Press, subject to its own review for format and style, only through departments of the various Smithsonian museums or bureaux, where the manuscripts are given substantive review. -
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Appendix 1 FISH SPECIES IDENTIFIED FROM THE COASTAL EAST CAPE REGION Surveys of the East Cape Region (Bay of Plenty and East Coast) were conducted during 1992, 1993, and 1999 (see Tables 1, 2, and 4 for locality data), with additional records from the National Fish Collection. FAMILY, SPECIES, AND AUTHORITY COMMON NAME STATIONS Lamnidae Isurus oxyrinchus Rafinesque mako shark (P) E20o Squalidae Squalus mitsukurii Jordon & Snyder piked spurdog (D) W Dasyatidae Dasyatis brevicaudata (Hutton) shorttailed stingray E19o Myliobatidae eMyliobatis tenuicaudatus (Hector) eagle ray E03° Anguillidae Anguilla australis Richardson shortfin eel (F) W eAnguilla dieffenbachii Gray longfin eel (F) W Muraenidae Gymnothorax prasinus (Richardson) yellow moray E05o, E08° Ophichthyidae Scolecenchelys australis (MacLeay) shortfinned worm eel E01, E10, E11, E28, E29, E33, E48 Congridae Conger verreauxi Kaup southern conger eel E03, E07, E09, E12°, E13, E16, E18, E22o, E23o, E25o, E31, E33 Conger wilsoni (Bloch & Schneider) northern conger eel W; E05, E09, E12, E27 Conger sp. conger E01°, E31o Engraulidae Engraulis australis (White) anchovy (P) E Clupeidae Sardinops neopilchardus (Steindachner) pilchard (P) E Gonorynchidae Gonorynchus forsteri Ogilby sandfish (D) E Retropinnidae eRetropinna retropinna (Richardson) smelt (F) W; E Galaxiidae Galaxias maculatus (Jenyns) inanga (F) W; E Bythitidae eBidenichthys beeblebroxi Paulin grey brotula E01, E03, E08, E09, E10, E12, E18, E19, E21, E23, E27, E28, E29, E31, E33, E34 eBrosmodorsalis persicinus Paulin & Roberts pink brotula E02, E07, E10°, E18, E22, E29, E31, E33o eDermatopsis macrodon Ogilby fleshfish E08, E31 Moridae Austrophycis marginata (Günther) dwarf cod (D) E Continued next page > e = NZ endemic species. D = deepwater species (> 50 m depth); E = estuarine species; F = freshwater species; P = pelagic species; U = species of uncertain identity. -
A Checklist of Fishes of the Aldermen Islands, North-Eastern New Zealand, with Additions to the Fishes of Red Mercury Island
13 A CHECKLIST OF FISHES OF THE ALDERMEN ISLANDS, NORTH-EASTERN NEW ZEALAND, WITH ADDITIONS TO THE FISHES OF RED MERCURY ISLAND by Roger V. Grace* SUMMARY Sixty-five species of marine fishes are listed for the Aldermen Islands, and additions made to an earlier list for Red Mercury Island (Grace, 1972), 35 km to the north. Warm water affinities of the faunas are briefly discussed. INTRODUCTION During recent years, and particularly the last four years, over 30 species of fishes have been added to the New Zealand fish fauna through observation by divers, mainly at the Poor Knights Islands (Russell, 1971; Stephenson, 1970, 1971; Doak, 1972; Whitley, 1968). A high proportion of the fishes of northern New Zealand have strong sub-tropical affinities (Moreland, 1958), and there is considerable evidence (Doak, 1972) to suggest that many of the recently discovered species are new arrivals from tropical and subtropical areas. These fishes probably arrive as eggs or larvae, carried by favourable ocean currents, and find suitable habitats for their development at the Poor Knights Islands, where the warm currents that transported the young fish or eggs maintain a water temperature higher than that on the adjacent coast, or islands to the south. Unless these fishes are able to establish breeding populations in New Zealand waters, they are likely to be merely transient. If they become established, they may begin to spread and colonise other off-shore islands and the coast. In order to monitor any spreading of new arrivals, or die-off due to inability to breed, it is desirable to compile a series of fish lists, as complete as possible, for the off-shore islands of the north-east coast of New Zealand. -
Latris Lineata) in a Data Limited Situation
Assessing the population dynamics and stock viability of striped trumpeter (Latris lineata) in a data limited situation Sean Tracey B. App. Sci. [Fisheries](AMC) A thesis submitted for the degree of Doctor of Philosophy University of Tasmania February 2007 Supervisors Dr. J. Lyle Dr. A. Hobday For my family...Anj and Kails Statement of access I, the undersigned, the author of this thesis, understand that the University of Tas- mania will make it available for use within the university library and, by microfilm or other photographic means, and allow access to users in other approved libraries. All users consulting this thesis will have to sign the following statement: ‘In consulting this thesis I agree not to copy or closely paraphrase it in whole or in part, or use the results in any other work (written or otherwise) without the signed consent of the author; and to make proper written acknowledgment for any other assistance which I have obtained from it.’ Beyond this, I do not wish to place any restrictions on access to this thesis. Signed: .......................................Date:........................................ Sean Tracey Candidate University of Tasmania Declaration I declare that this thesis is my own work and has not been submitted in any form for another degree or diploma at any university or other institution of tertiary edu- cation. Information derived from the published or unpublished work of others has been acknowledged in the text and a list of references is given. Signed: .......................................Date:........................................ Sean Tracey Candidate University of Tasmania Statement of co-authorship Chapters 2 – 5 of this thesis have been prepared as scientific manuscripts. -
Cirrhitidae 3321
click for previous page Perciformes: Percoidei: Cirrhitidae 3321 CIRRHITIDAE Hawkfishes by J.E. Randall iagnostic characters: Oblong fishes (size to about 30 cm), body depth 2 to 4.6 times in standard Dlength. A fringe of cirri on posterior edge of anterior nostril. Two indistinct spines on opercle. A row of canine teeth in jaws, the longest usually anteriorly in upper jaw and half-way back on lower jaw; a band of villiform teeth inside the canines, broader anteriorly (in lower jaw only anteriorly). One or more cirri projecting from tips of interspinous membranes of dorsal fin. Dorsal fin continuous, with X spines and 11 to 17 soft rays, notched between spinous and soft portions; anal fin with III spines and 5 to 7 (usually 6) soft rays; pectoral fins with 14 rays, the lower 5 to 7 rays unbranched and usually enlarged, with the membranes deeply incised; pelvic fins with I spine and 5 soft rays. Principal caudal-fin rays 15. Branchiostegal rays 6. Scales cycloid. Swimbladder absent. Vertebrae 26. Colour: variable with species. cirri lower pectoral-fin rays thickened and unbranched Remarks: The hawkfish family consists of 10 genera and 38 species, 33 of which occur in the Indo-Pacific region; 19 species are found in the Western Central Pacific. Habitat, biology, and fisheries: Cirrhitids are bottom-dwelling fishes of coral reefs or rocky substrata; the majority occur in shallow water. They use their thickened lower pectoral-fin rays to wedge themselves in position in areas subject to surge. All species are carnivorous, feeding mainly on benthic crustaceans. -
TNP SOK 2011 Internet
GARDEN ROUTE NATIONAL PARK : THE TSITSIKAMMA SANP ARKS SECTION STATE OF KNOWLEDGE Contributors: N. Hanekom 1, R.M. Randall 1, D. Bower, A. Riley 2 and N. Kruger 1 1 SANParks Scientific Services, Garden Route (Rondevlei Office), PO Box 176, Sedgefield, 6573 2 Knysna National Lakes Area, P.O. Box 314, Knysna, 6570 Most recent update: 10 May 2012 Disclaimer This report has been produced by SANParks to summarise information available on a specific conservation area. Production of the report, in either hard copy or electronic format, does not signify that: the referenced information necessarily reflect the views and policies of SANParks; the referenced information is either correct or accurate; SANParks retains copies of the referenced documents; SANParks will provide second parties with copies of the referenced documents. This standpoint has the premise that (i) reproduction of copywrited material is illegal, (ii) copying of unpublished reports and data produced by an external scientist without the author’s permission is unethical, and (iii) dissemination of unreviewed data or draft documentation is potentially misleading and hence illogical. This report should be cited as: Hanekom N., Randall R.M., Bower, D., Riley, A. & Kruger, N. 2012. Garden Route National Park: The Tsitsikamma Section – State of Knowledge. South African National Parks. TABLE OF CONTENTS 1. INTRODUCTION ...............................................................................................................2 2. ACCOUNT OF AREA........................................................................................................2 -
New Zealand Fishes a Field Guide to Common Species Caught by Bottom, Midwater, and Surface Fishing Cover Photos: Top – Kingfish (Seriola Lalandi), Malcolm Francis
New Zealand fishes A field guide to common species caught by bottom, midwater, and surface fishing Cover photos: Top – Kingfish (Seriola lalandi), Malcolm Francis. Top left – Snapper (Chrysophrys auratus), Malcolm Francis. Centre – Catch of hoki (Macruronus novaezelandiae), Neil Bagley (NIWA). Bottom left – Jack mackerel (Trachurus sp.), Malcolm Francis. Bottom – Orange roughy (Hoplostethus atlanticus), NIWA. New Zealand fishes A field guide to common species caught by bottom, midwater, and surface fishing New Zealand Aquatic Environment and Biodiversity Report No: 208 Prepared for Fisheries New Zealand by P. J. McMillan M. P. Francis G. D. James L. J. Paul P. Marriott E. J. Mackay B. A. Wood D. W. Stevens L. H. Griggs S. J. Baird C. D. Roberts‡ A. L. Stewart‡ C. D. Struthers‡ J. E. Robbins NIWA, Private Bag 14901, Wellington 6241 ‡ Museum of New Zealand Te Papa Tongarewa, PO Box 467, Wellington, 6011Wellington ISSN 1176-9440 (print) ISSN 1179-6480 (online) ISBN 978-1-98-859425-5 (print) ISBN 978-1-98-859426-2 (online) 2019 Disclaimer While every effort was made to ensure the information in this publication is accurate, Fisheries New Zealand does not accept any responsibility or liability for error of fact, omission, interpretation or opinion that may be present, nor for the consequences of any decisions based on this information. Requests for further copies should be directed to: Publications Logistics Officer Ministry for Primary Industries PO Box 2526 WELLINGTON 6140 Email: [email protected] Telephone: 0800 00 83 33 Facsimile: 04-894 0300 This publication is also available on the Ministry for Primary Industries website at http://www.mpi.govt.nz/news-and-resources/publications/ A higher resolution (larger) PDF of this guide is also available by application to: [email protected] Citation: McMillan, P.J.; Francis, M.P.; James, G.D.; Paul, L.J.; Marriott, P.; Mackay, E.; Wood, B.A.; Stevens, D.W.; Griggs, L.H.; Baird, S.J.; Roberts, C.D.; Stewart, A.L.; Struthers, C.D.; Robbins, J.E. -
Reef Fishes of the Bird's Head Peninsula, West
Check List 5(3): 587–628, 2009. ISSN: 1809-127X LISTS OF SPECIES Reef fishes of the Bird’s Head Peninsula, West Papua, Indonesia Gerald R. Allen 1 Mark V. Erdmann 2 1 Department of Aquatic Zoology, Western Australian Museum. Locked Bag 49, Welshpool DC, Perth, Western Australia 6986. E-mail: [email protected] 2 Conservation International Indonesia Marine Program. Jl. Dr. Muwardi No. 17, Renon, Denpasar 80235 Indonesia. Abstract A checklist of shallow (to 60 m depth) reef fishes is provided for the Bird’s Head Peninsula region of West Papua, Indonesia. The area, which occupies the extreme western end of New Guinea, contains the world’s most diverse assemblage of coral reef fishes. The current checklist, which includes both historical records and recent survey results, includes 1,511 species in 451 genera and 111 families. Respective species totals for the three main coral reef areas – Raja Ampat Islands, Fakfak-Kaimana coast, and Cenderawasih Bay – are 1320, 995, and 877. In addition to its extraordinary species diversity, the region exhibits a remarkable level of endemism considering its relatively small area. A total of 26 species in 14 families are currently considered to be confined to the region. Introduction and finally a complex geologic past highlighted The region consisting of eastern Indonesia, East by shifting island arcs, oceanic plate collisions, Timor, Sabah, Philippines, Papua New Guinea, and widely fluctuating sea levels (Polhemus and the Solomon Islands is the global centre of 2007). reef fish diversity (Allen 2008). Approximately 2,460 species or 60 percent of the entire reef fish The Bird’s Head Peninsula and surrounding fauna of the Indo-West Pacific inhabits this waters has attracted the attention of naturalists and region, which is commonly referred to as the scientists ever since it was first visited by Coral Triangle (CT). -
Biogenic Habitats on New Zealand's Continental Shelf. Part II
Biogenic habitats on New Zealand’s continental shelf. Part II: National field survey and analysis New Zealand Aquatic Environment and Biodiversity Report No. 202 E.G. Jones M.A. Morrison N. Davey S. Mills A. Pallentin S. George M. Kelly I. Tuck ISSN 1179-6480 (online) ISBN 978-1-77665-966-1 (online) September 2018 Requests for further copies should be directed to: Publications Logistics Officer Ministry for Primary Industries PO Box 2526 WELLINGTON 6140 Email: [email protected] Telephone: 0800 00 83 33 Facsimile: 04-894 0300 This publication is also available on the Ministry for Primary Industries websites at: http://www.mpi.govt.nz/news-and-resources/publications http://fs.fish.govt.nz go to Document library/Research reports © Crown Copyright – Fisheries New Zealand TABLE OF CONTENTS EXECUTIVE SUMMARY 1 1. INTRODUCTION 3 1.1 Overview 3 1.2 Objectives 4 2. METHODS 5 2.1 Selection of locations for sampling. 5 2.2 Field survey design and data collection approach 6 2.3 Onboard data collection 7 2.4 Selection of core areas for post-voyage processing. 8 Multibeam data processing 8 DTIS imagery analysis 10 Reference libraries 10 Still image analysis 10 Video analysis 11 Identification of biological samples 11 Sediment analysis 11 Grain-size analysis 11 Total organic matter 12 Calcium carbonate content 12 2.5 Data Analysis of Core Areas 12 Benthic community characterization of core areas 12 Relating benthic community data to environmental variables 13 Fish community analysis from DTIS video counts 14 2.6 Synopsis Section 15 3. RESULTS 17 3.1