Arctic Biodiversity Assessment
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Phylogeny of the Cetrarioid Core (Parmeliaceae) Based on Five
The Lichenologist 41(5): 489–511 (2009) © 2009 British Lichen Society doi:10.1017/S0024282909990090 Printed in the United Kingdom Phylogeny of the cetrarioid core (Parmeliaceae) based on five genetic markers Arne THELL, Filip HÖGNABBA, John A. ELIX, Tassilo FEUERER, Ingvar KÄRNEFELT, Leena MYLLYS, Tiina RANDLANE, Andres SAAG, Soili STENROOS, Teuvo AHTI and Mark R. D. SEAWARD Abstract: Fourteen genera belong to a monophyletic core of cetrarioid lichens, Ahtiana, Allocetraria, Arctocetraria, Cetraria, Cetrariella, Cetreliopsis, Flavocetraria, Kaernefeltia, Masonhalea, Nephromopsis, Tuckermanella, Tuckermannopsis, Usnocetraria and Vulpicida. A total of 71 samples representing 65 species (of 90 worldwide) and all type species of the genera are included in phylogentic analyses based on a complete ITS matrix and incomplete sets of group I intron, -tubulin, GAPDH and mtSSU sequences. Eleven of the species included in the study are analysed phylogenetically for the first time, and of the 178 sequences, 67 are newly constructed. Two phylogenetic trees, one based solely on the complete ITS-matrix and a second based on total information, are similar, but not entirely identical. About half of the species are gathered in a strongly supported clade composed of the genera Allocetraria, Cetraria s. str., Cetrariella and Vulpicida. Arctocetraria, Cetreliopsis, Kaernefeltia and Tuckermanella are monophyletic genera, whereas Cetraria, Flavocetraria and Tuckermannopsis are polyphyletic. The taxonomy in current use is compared with the phylogenetic results, and future, probable or potential adjustments to the phylogeny are discussed. The single non-DNA character with a strong correlation to phylogeny based on DNA-sequences is conidial shape. The secondary chemistry of the poorly known species Cetraria annae is analyzed for the first time; the cortex contains usnic acid and atranorin, whereas isonephrosterinic, nephrosterinic, lichesterinic, protolichesterinic and squamatic acids occur in the medulla. -
Chorioactidaceae: a New Family in the Pezizales (Ascomycota) with Four Genera
mycological research 112 (2008) 513–527 journal homepage: www.elsevier.com/locate/mycres Chorioactidaceae: a new family in the Pezizales (Ascomycota) with four genera Donald H. PFISTER*, Caroline SLATER, Karen HANSENy Harvard University Herbaria – Farlow Herbarium of Cryptogamic Botany, Department of Organismic and Evolutionary Biology, Harvard University, 22 Divinity Avenue, Cambridge, MA 02138, USA article info abstract Article history: Molecular phylogenetic and comparative morphological studies provide evidence for the Received 15 June 2007 recognition of a new family, Chorioactidaceae, in the Pezizales. Four genera are placed in Received in revised form the family: Chorioactis, Desmazierella, Neournula, and Wolfina. Based on parsimony, like- 1 November 2007 lihood, and Bayesian analyses of LSU, SSU, and RPB2 sequence data, Chorioactidaceae repre- Accepted 29 November 2007 sents a sister clade to the Sarcosomataceae, to which some of these taxa were previously Corresponding Editor: referred. Morphologically these genera are similar in pigmentation, excipular construction, H. Thorsten Lumbsch and asci, which mostly have terminal opercula and rounded, sometimes forked, bases without croziers. Ascospores have cyanophilic walls or cyanophilic surface ornamentation Keywords: in the form of ridges or warts. So far as is known the ascospores and the cells of the LSU paraphyses of all species are multinucleate. The six species recognized in these four genera RPB2 all have limited geographical distributions in the northern hemisphere. Sarcoscyphaceae ª 2007 The British Mycological Society. Published by Elsevier Ltd. All rights reserved. Sarcosomataceae SSU Introduction indicated a relationship of these taxa to the Sarcosomataceae and discussed the group as the Chorioactis clade. Only six spe- The Pezizales, operculate cup-fungi, have been put on rela- cies are assigned to these genera, most of which are infre- tively stable phylogenetic footing as summarized by Hansen quently collected. -
Melampsora Medusae
European and Mediterranean Plant Protection Organization PM 7/93 (1) Organisation Europe´enne et Me´diterrane´enne pour la Protection des Plantes Diagnostics Diagnostic Melampsora medusae Specific scope Specific approval and amendment This standard describes a diagnostic protocol for Melampsora Approved in 2009–09. medusae1 Populus trichocarpa, and their interspecific hybrids (Frey et al., Introduction 2005). In Europe, most of the cultivated poplars are P. · eur- Melampsora medusae Thu¨men is one of the causal agents of americana (P. deltoides · P. nigra)andP. · interamericana poplar rust. The main species involved in this disease in Europe (P. trichocarpa · P. deltoides) hybrids. In addition, Shain (1988) on cultivated poplars are Melampsora larici-populina and showed evidence for the existence of two formae speciales within Melampsora allii-populina. All three species cause abundant M. medusae and named them M. medusae f. sp. deltoidae and uredinia production on leaves, which can lead to premature M. medusae f. sp. tremuloidae according to their primary host, defoliation and growth reduction. After several years of severe Populus deltoides and Populus tremuloides, respectively. Neither infection leading to repeated defoliation, the disease may predis- the EU directive, nor the EPPO make the distinction between pose the trees to dieback or even death for the younger trees. these two formae speciales but only refer to M. medusae.Not- Melampsora rust is a very common disease of poplar trees, which withstanding, since M. medusae was only reported in Europe on can cause severe economic losses in commercial poplar cultiva- poplars from the sections Aigeiros and Tacamahaca,andin tion because of the emergence and spread of new pathotypes of respect with the host specialization, it can be stated that only M. -
Diversity and Distribution of Lichen-Associated Fungi in the Ny-Ålesund Region (Svalbard, High Arctic) As Revealed by 454 Pyrosequencing
www.nature.com/scientificreports OPEN Diversity and distribution of lichen- associated fungi in the Ny-Ålesund Region (Svalbard, High Arctic) as Received: 31 March 2015 Accepted: 20 August 2015 revealed by 454 pyrosequencing Published: 14 October 2015 Tao Zhang1, Xin-Li Wei2, Yu-Qin Zhang1, Hong-Yu Liu1 & Li-Yan Yu1 This study assessed the diversity and distribution of fungal communities associated with seven lichen species in the Ny-Ålesund Region (Svalbard, High Arctic) using Roche 454 pyrosequencing with fungal-specific primers targeting the internal transcribed spacer (ITS) region of the ribosomal rRNA gene. Lichen-associated fungal communities showed high diversity, with a total of 42,259 reads belonging to 370 operational taxonomic units (OTUs) being found. Of these OTUs, 294 belonged to Ascomycota, 54 to Basidiomycota, 2 to Zygomycota, and 20 to unknown fungi. Leotiomycetes, Dothideomycetes, and Eurotiomycetes were the major classes, whereas the dominant orders were Helotiales, Capnodiales, and Chaetothyriales. Interestingly, most fungal OTUs were closely related to fungi from various habitats (e.g., soil, rock, plant tissues) in the Arctic, Antarctic and alpine regions, which suggests that living in association with lichen thalli may be a transient stage of life cycle for these fungi and that long-distance dispersal may be important to the fungi in the Arctic. In addition, host-related factors shaped the lichen-associated fungal communities in this region. Taken together, these results suggest that lichens thalli act as reservoirs of diverse fungi from various niches, which may improve our understanding of fungal evolution and ecology in the Arctic. The Arctic is one of the most pristine regions of the planet, and its environment exhibits extreme condi- tions (e.g., low temperature, strong winds, permafrost, and long periods of darkness and light) and offers unique opportunities to explore extremophiles. -
Evolution of Isoprenyl Diphosphate Synthase-Like Terpene
www.nature.com/scientificreports OPEN Evolution of isoprenyl diphosphate synthase‑like terpene synthases in fungi Guo Wei1, Franziska Eberl2, Xinlu Chen1, Chi Zhang1, Sybille B. Unsicker2, Tobias G. Köllner2, Jonathan Gershenzon2 & Feng Chen1* Terpene synthases (TPSs) and trans‑isoprenyl diphosphate synthases (IDSs) are among the core enzymes for creating the enormous diversity of terpenoids. Despite having no sequence homology, TPSs and IDSs share a conserved “α terpenoid synthase fold” and a trinuclear metal cluster for catalysis, implying a common ancestry with TPSs hypothesized to evolve from IDSs anciently. Here we report on the identifcation and functional characterization of novel IDS-like TPSs (ILTPSs) in fungi that evolved from IDS relatively recently, indicating recurrent evolution of TPSs from IDSs. Through large-scale bioinformatic analyses of fungal IDSs, putative ILTPSs that belong to the geranylgeranyl diphosphate synthase (GGDPS) family of IDSs were identifed in three species of Melampsora. Among the GGDPS family of the two Melampsora species experimentally characterized, one enzyme was verifed to be bona fde GGDPS and all others were demonstrated to function as TPSs. Melampsora ILTPSs displayed kinetic parameters similar to those of classic TPSs. Key residues underlying the determination of GGDPS versus ILTPS activity and functional divergence of ILTPSs were identifed. Phylogenetic analysis implies a recent origination of these ILTPSs from a GGDPS progenitor in fungi, after the split of Melampsora from other genera within the class of Pucciniomycetes. For the poplar leaf rust fungus Melampsora larici-populina, the transcripts of its ILTPS genes were detected in infected poplar leaves, suggesting possible involvement of these recently evolved ILTPS genes in the infection process. -
2. Typification of Gyromitra Fastigiata and Helvella Grandis
Preliminary phylogenetic and morphological studies in the Gyromitra gigas lineage (Pezizales). 2. Typification of Gyromitra fastigiata and Helvella grandis Nicolas VAN VOOREN Abstract: Helvella fastigiata and H. grandis are epitypified with material collected in the original area. Matteo CARBONE Gyromitra grandis is proposed as a new combination and regarded as a priority synonym of G. fastigiata. The status of Gyromitra slonevskii is also discussed. photographs of fresh specimens and original plates illustrate the article. Keywords: ascomycota, phylogeny, taxonomy, four new typifications. Ascomycete.org, 11 (3) : 69–74 Mise en ligne le 08/05/2019 Résumé : Helvella fastigiata et H. grandis sont épitypifiés avec du matériel récolté dans la région d’origine. 10.25664/ART-0261 Gyromitra grandis est proposé comme combinaison nouvelle et regardé comme synonyme prioritaire de G. fastigiata. le statut de Gyromitra slonevskii est également discuté. Des photographies de spécimens frais et des planches originales illustrent cet article. Riassunto: Helvella fastigiata e H. grandis vengono epitipificate con materiale raccolto nelle rispettive zone d’origine. Gyromitra grandis viene proposta come nuova combinazione e ritenuta sinonimo prioritario di G. fastigiata. Viene inoltre discusso lo status di Gyromitra slonevskii. l’articolo viene corredato da foto di esem- plari freschi e delle tavole originali. Introduction paul-de-Varces, alt. 1160 m, 45.07999° n 5.627088° e, in a mixed for- est, 11 May 2004, leg. e. Mazet, pers. herb. n.V. 2004.05.01. During a preliminary morphological and phylogenetic study in the subgenus Discina (Fr.) Harmaja (Carbone et al., 2018), especially Results the group of species close to Gyromitra gigas (Krombh.) Quél., we sequenced collections of G. -
The Puzzle of Lichen Symbiosis
Digital Comprehensive Summaries of Uppsala Dissertations from the Faculty of Science and Technology 1503 The puzzle of lichen symbiosis Pieces from Thamnolia IOANA ONUT, -BRÄNNSTRÖM ACTA UNIVERSITATIS UPSALIENSIS ISSN 1651-6214 ISBN 978-91-554-9887-0 UPPSALA urn:nbn:se:uu:diva-319639 2017 Dissertation presented at Uppsala University to be publicly examined in Lindhalsalen, EBC, Norbyvägen 14, Uppsala, Thursday, 1 June 2017 at 09:15 for the degree of Doctor of Philosophy. The examination will be conducted in English. Faculty examiner: Associate Professor Anne Pringle (University of Wisconsin-Madison, Department of Botany). Abstract Onuț-Brännström, I. 2017. The puzzle of lichen symbiosis. Pieces from Thamnolia. Digital Comprehensive Summaries of Uppsala Dissertations from the Faculty of Science and Technology 1503. 62 pp. Uppsala: Acta Universitatis Upsaliensis. ISBN 978-91-554-9887-0. Symbiosis brought important evolutionary novelties to life on Earth. Lichens, the symbiotic entities formed by fungi, photosynthetic organisms and bacteria, represent an example of a successful adaptation in surviving hostile environments. Yet many aspects of the lichen symbiosis remain unexplored. This thesis aims at bringing insights into lichen biology and the importance of symbiosis in adaptation. I am using as model system a successful colonizer of tundra and alpine environments, the worm lichens Thamnolia, which seem to only reproduce vegetatively through symbiotic propagules. When the genetic architecture of the mating locus of the symbiotic fungal partner was analyzed with genomic and transcriptomic data, a sexual self-incompatible life style was revealed. However, a screen of the mating types ratios across natural populations detected only one of the mating types, suggesting that Thamnolia has no potential for sexual reproduction because of lack of mating partners. -
LUNDY FUNGI: FURTHER SURVEYS 2004-2008 by JOHN N
Journal of the Lundy Field Society, 2, 2010 LUNDY FUNGI: FURTHER SURVEYS 2004-2008 by JOHN N. HEDGER1, J. DAVID GEORGE2, GARETH W. GRIFFITH3, DILUKA PEIRIS1 1School of Life Sciences, University of Westminster, 115 New Cavendish Street, London, W1M 8JS 2Natural History Museum, Cromwell Road, London, SW7 5BD 3Institute of Biological Environmental and Rural Sciences, University of Aberystwyth, SY23 3DD Corresponding author, e-mail: [email protected] ABSTRACT The results of four five-day field surveys of fungi carried out yearly on Lundy from 2004-08 are reported and the results compared with the previous survey by ourselves in 2003 and to records made prior to 2003 by members of the LFS. 240 taxa were identified of which 159 appear to be new records for the island. Seasonal distribution, habitat and resource preferences are discussed. Keywords: Fungi, ecology, biodiversity, conservation, grassland INTRODUCTION Hedger & George (2004) published a list of 108 taxa of fungi found on Lundy during a five-day survey carried out in October 2003. They also included in this paper the records of 95 species of fungi made from 1970 onwards, mostly abstracted from the Annual Reports of the Lundy Field Society, and found that their own survey had added 70 additional records, giving a total of 156 taxa. They concluded that further surveys would undoubtedly add to the database, especially since the autumn of 2003 had been exceptionally dry, and as a consequence the fruiting of the larger fleshy fungi on Lundy, especially the grassland species, had been very poor, resulting in under-recording. Further five-day surveys were therefore carried out each year from 2004-08, three in the autumn, 8-12 November 2004, 4-9 November 2007, 3-11 November 2008, one in winter, 23-27 January 2006 and one in spring, 9-16 April 2005. -
Garden's Bulletin Part2 13.Indd
Gardens’A Conspectus Bulletin of the Lichens Singapore (Lichenized 61 (2):Fungi) 437-481. of Singapore 2010 437 A Conspectus of the Lichens (Lichenized Fungi) of Singapore H.J.M. SIPMAN Free University of Berlin Botanical Garden and Museum Königin-Luise-Str. 6-8 D-14195 Berlin, Germany Abstract A total of 296 species of lichenized fungi are reported from Singapore and presented in an annotated list with local distributional information. It is based on herbarium and literature study and the fieldwork done in the year 2000. Unidentified samples suggest the figure to be an underestimation, while some of the listed species may have become extinct. Lists of synonyms and collectors are added. Introduction Tropical conurbations, the world’s most fast-growing habitat, have turned out to harbour significant numbers of lichenized fungi.A ptroot and Seaward (1999) and Aptroot and Sipman (2001) report no less than 308 species for the city of Hongkong. Singapore seems particularly suitable for a study of lichens in an urbanized tropical area because it has received regular attention from botanists during its development from primary lowland forest with small settlements ca 1800 to extensive plantations a century later and to the present urbanized area with large built-up high rise areas interspersed by parks and secondary forest. During 1800-1964 scattered lichen collections were made by visiting and resident general botanists, e.g., E. Almquist, O. Beccari, T.R. Chipp, Kiah, A.M. Lemaitre, A.C. Maingay, H. Möller. Their collections have been investigated and published by, e.g., Krempelhuber (1875, 1877), Nylander and Crombie (1884) and Müller Argoviensis (1893). -
A New Species of Aspicilia (Megasporaceae), with a New Lichenicolous Sagediopsis (Adelococcaceae), from the Falkland Islands
The Lichenologist (2021), 53, 307–315 doi:10.1017/S0024282921000244 Standard Paper A new species of Aspicilia (Megasporaceae), with a new lichenicolous Sagediopsis (Adelococcaceae), from the Falkland Islands Alan M. Fryday1 , Timothy B. Wheeler2 and Javier Etayo3 1Department of Plant Biology, Michigan State University, East Lansing, Michigan 48824, USA; 2Division of Biological Sciences, University of Montana, Missoula, Montana 59801, USA and 3Navarro Villoslada 16, 3° dcha., 31003 Pamplona, Navarra, Spain Abstract The new species Aspicilia malvinae is described from the Falkland Islands. It is the first species of Megasporaceae to be discovered on the islands and only the seventh to be reported from South America. It is distinguished from other species of Aspicilia by the unusual secondary metabolite chemistry (hypostictic acid) and molecular sequence data. The collections of the new species support two lichenicolous fungi: Endococcus propinquus s. lat., which is new to the Falkland Islands, and a new species of Sagediopsis with small perithecia and 3-septate ascospores c. 18–20 × 4–5 μm, which is described here as S. epimalvinae. A total of 60 new DNA sequences obtained from species of Megasporaceae (mostly Aspicilia) are also introduced. Key words: DNA sequences, Endococcus, Lecanora masafuerensis, lichen, southern South America, southern subpolar region (Accepted 18 March 2021) Introduction Materials and Methods Species of Megasporaceae Lumbsch et al. are surprisingly scarce Morphological methods in the Southern Hemisphere. Whereas 97 species are known Gross morphology was examined under a dissecting microscope from North America (Esslinger 2019), 104 from Russia and apothecial characteristics by light microscopy (compound (Urbanavichus 2010), 40 from Svalbard (Øvstedal et al. -
Studies of the Laboulbeniomycetes: Diversity, Evolution, and Patterns of Speciation
Studies of the Laboulbeniomycetes: Diversity, Evolution, and Patterns of Speciation The Harvard community has made this article openly available. Please share how this access benefits you. Your story matters Citable link http://nrs.harvard.edu/urn-3:HUL.InstRepos:40049989 Terms of Use This article was downloaded from Harvard University’s DASH repository, and is made available under the terms and conditions applicable to Other Posted Material, as set forth at http:// nrs.harvard.edu/urn-3:HUL.InstRepos:dash.current.terms-of- use#LAA ! STUDIES OF THE LABOULBENIOMYCETES: DIVERSITY, EVOLUTION, AND PATTERNS OF SPECIATION A dissertation presented by DANNY HAELEWATERS to THE DEPARTMENT OF ORGANISMIC AND EVOLUTIONARY BIOLOGY in partial fulfillment of the requirements for the degree of Doctor of Philosophy in the subject of Biology HARVARD UNIVERSITY Cambridge, Massachusetts April 2018 ! ! © 2018 – Danny Haelewaters All rights reserved. ! ! Dissertation Advisor: Professor Donald H. Pfister Danny Haelewaters STUDIES OF THE LABOULBENIOMYCETES: DIVERSITY, EVOLUTION, AND PATTERNS OF SPECIATION ABSTRACT CHAPTER 1: Laboulbeniales is one of the most morphologically and ecologically distinct orders of Ascomycota. These microscopic fungi are characterized by an ectoparasitic lifestyle on arthropods, determinate growth, lack of asexual state, high species richness and intractability to culture. DNA extraction and PCR amplification have proven difficult for multiple reasons. DNA isolation techniques and commercially available kits are tested enabling efficient and rapid genetic analysis of Laboulbeniales fungi. Success rates for the different techniques on different taxa are presented and discussed in the light of difficulties with micromanipulation, preservation techniques and negative results. CHAPTER 2: The class Laboulbeniomycetes comprises biotrophic parasites associated with arthropods and fungi. -
Thamnolia Subuliformis – (Ehrh.) Culb
SPECIES: Scientific [common] Thamnolia subuliformis – (Ehrh.) Culb. [Whiteworm lichen] Forest: Salmon–Challis National Forest Forest Reviewer: Jessica M Dhaemers; Brittni Brown; John Proctor, Rose Lehman Date of Review: 10/13/2017; 13 February 2018; 15 March 2018 Forest concurrence (or NO recommendation if new) for inclusion of species on list of potential SCC: (Enter Yes or No) FOREST REVIEW RESULTS: 1. The Forest concurs or recommends the species for inclusion on the list of potential SCC: Yes___ No_X__ 2. Rationale for not concurring is based on (check all that apply): Species is not native to the plan area _______ Species is not known to occur in the plan area _______ Species persistence in the plan area is not of substantial concern ___X____ FOREST REVIEW INFORMATION: 1. Is the Species Native to the Plan Area? Yes _X_ No___ If no, provide explanation and stop assessment. 2. Is the Species Known to Occur within the Planning Area? Yes _X _ No___ If no, stop assessment. Table 1. All Known Occurrences, Years, and Frequency within the Planning Area Year Number of Location of Observations (USFS Source of Information Observed Individuals District, Town, River, Road Intersection, HUC, etc.) 1987 Not Middle Fork Ranger District IDFG Element Occurrence EO reported Along the Middle Fork Salmon Number: 1 River, across from Hospital Bar; EO_ID: 3589 in Frank Church–River of No Old EO_ID: 9675 Return Wilderness and Middle Fork Salmon River Wild and Scenic River Corridor (Wild classification); moss-covered, north-facing small cliff band, 4,100 feet in elevation 1996 Not Lost River Ranger District Consortium of North American reported Vicinity of Mill Lake in Mill Lake Lichen Herbarium.