Localization of the Oxidative Defect in Phytanic Acid Degradation in Patients with Refsum's Disease
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Retention Indices for Frequently Reported Compounds of Plant Essential Oils
Retention Indices for Frequently Reported Compounds of Plant Essential Oils V. I. Babushok,a) P. J. Linstrom, and I. G. Zenkevichb) National Institute of Standards and Technology, Gaithersburg, Maryland 20899, USA (Received 1 August 2011; accepted 27 September 2011; published online 29 November 2011) Gas chromatographic retention indices were evaluated for 505 frequently reported plant essential oil components using a large retention index database. Retention data are presented for three types of commonly used stationary phases: dimethyl silicone (nonpolar), dimethyl sili- cone with 5% phenyl groups (slightly polar), and polyethylene glycol (polar) stationary phases. The evaluations are based on the treatment of multiple measurements with the number of data records ranging from about 5 to 800 per compound. Data analysis was limited to temperature programmed conditions. The data reported include the average and median values of retention index with standard deviations and confidence intervals. VC 2011 by the U.S. Secretary of Commerce on behalf of the United States. All rights reserved. [doi:10.1063/1.3653552] Key words: essential oils; gas chromatography; Kova´ts indices; linear indices; retention indices; identification; flavor; olfaction. CONTENTS 1. Introduction The practical applications of plant essential oils are very 1. Introduction................................ 1 diverse. They are used for the production of food, drugs, per- fumes, aromatherapy, and many other applications.1–4 The 2. Retention Indices ........................... 2 need for identification of essential oil components ranges 3. Retention Data Presentation and Discussion . 2 from product quality control to basic research. The identifi- 4. Summary.................................. 45 cation of unknown compounds remains a complex problem, in spite of great progress made in analytical techniques over 5. -
Abstract DRAYTON, JOSEPHINE BENTLEY
Abstract DRAYTON, JOSEPHINE BENTLEY. Methylated Medium- and Long-Chain Fatty Acids as Novel Sources of Anaplerotic Carbon for Exercising Mice. (Under the direction of Dr. Jack Odle and Dr. Lin Xi.) We hypothesized that methylated fatty acids (e.g. 2-methylpentanoic acid (2MeP), phytanic acid or pristanic acid) would provide a novel source of anaplerotic carbon and thereby enhance fatty acid oxidation, especially under stressed conditions when tricarboxylic acid (TCA) cycle intermediates are depleted. The optimal dose of 2MeP, hexanoic acid (C6) and pristanic acid for increasing in vitro [1-14C]-oleic acid oxidation in liver or skeletal muscle homogenates from fasted mice was determined using incremental doses of 0, 0.25, 0.5, 0.75, or 1.0 mM. The 0.25 mM amount maximally stimulated liver tissue oxidation of 14 14 14 [1- C]-oleate to CO2 and [ C]-acid soluble products (ASP; P < 0.05). Similar incubations of 0.25 mM 2MeP, C6, palmitate, phytanic acid, or pristanic acid or 0.1 mM malate or propionyl-CoA were conducted with liver or skeletal muscle homogenates from exercised or sedentary mice. In vitro oxidation of [1-14C]-oleic acid in liver homogenates with 2MeP 14 14 increased mitochondrial CO2 accumulation (P <0.05), but no change in [ C]-ASP accumulation as compared to C6 (P > 0.05). Phytanic acid treatment increased [14C]-ASP accumulation in liver tissue as compared to palmitate (P < 0.05). Exercise increased [14C] accumulations (P < 0.05). Results were consistent with our hypothesis that methyl-branched fatty acids (2-MeP, phytanic and pristanic acids) provide a novel source of anaplerotic carbon and thereby stimulate in vitro fatty acid oxidation in liver and skeletal muscle tissues. -
VITAMIN K1 | C31H46O2 - Pubchem
VITAMIN K1 | C31H46O2 - PubChem https://pubchem.ncbi.nlm.nih.gov/compound/Phylloquinone#secti... NIH U.S. National Library of Medicine National Center for Biotechnology Information OPEN CHEMISTRY Search Compounds ! DATABASE VITAMIN K1 " Cite this Record # $ % & ' ( STRUCTURE VENDORS DRUG INFO PHARMACOLOGY LITERATURE PATENTS BIOACTIVITIES PubChem CID: 5284607 VITAMIN K1; Phytonadione; Phylloquinone; 84-80-0; Phytylmenadione; Chemical Names: Phyllochinon More... Molecular Formula: C31H46O2 Molecular Weight: 450.707 g/mol InChI Key: MBWXNTAXLNYFJB-NKFFZRIASA-N Drug Indication Therapeutic Uses Clinical Trials FDA Orange Book Drug Information: FDA UNII Safety Summary: Laboratory Chemical Safety Summary (LCSS) VITAMIN K1 is a family of phylloquinones that contains a ring of 2-methyl-1,4-naphthoquinone and an isoprenoid side chain. Members of this group of vitamin K 1 have only one double bond on the proximal isoprene unit. Rich sources of vitamin K 1 include green plants, algae, and photosynthetic bacteria. Vitamin K1 has antihemorrhagic and prothrombogenic activity. " from MeSH Vitamin K is a family of fat-soluble compounds with a common chemical structure based on 2-methyl-1, 4-naphthoquinone " Metabolite Description from Human Metabolome Database (HMDB) PUBCHEM ) COMPOUND ) VITAMIN K1 Modify Date: 2018-01-06; Create Date: 2004-09-16 1 di 57 12/01/18, 11:36 VITAMIN K1 | C31H46O2 - PubChem https://pubchem.ncbi.nlm.nih.gov/compound/Phylloquinone#secti... * Contents 1 2D Structure 2 3D Conformer 3 Names and Identifiers + 4 Chemical and Physical Properties 5 Related Records 6 Chemical Vendors 7 Drug and Medication Information 8 Pharmacology and Biochemistry 9 Use and Manufacturing 10 Identification 11 Safety and Hazards 12 Toxicity 13 Literature 14 Patents 15 Biomolecular Interactions and Pathways 16 Biological Test Results 17 Classification 18 Information Sources 2 di 57 12/01/18, 11:36 VITAMIN K1 | C31H46O2 - PubChem https://pubchem.ncbi.nlm.nih.gov/compound/Phylloquinone#secti.. -
Substrate Specificity of Rat Liver Mitochondrial Carnitine Palmitoyl Transferase I: Evidence Against S-Oxidation of Phytanic Acid in Rat Liver Mitochondria
FEBS 15107 FEBS Letters 359 (1995) 179 183 Substrate specificity of rat liver mitochondrial carnitine palmitoyl transferase I: evidence against s-oxidation of phytanic acid in rat liver mitochondria Harmeet Singh*, Alfred Poulos Department of Chemical Pathology, Women's and Children's Hospital 72 King William Road, North Adelaide, SA 5006, Australia Received 23 December 1994 demonstrated that CPTI activity is reversibly inhibited by Abstract The two branched chain fatty acids pristanic acid malonyl-CoA. Recently, it has been shown that malonyl-CoA (2,6,10,14-tetramethylpentadecanoic acid) and phytanic acid inhibits peroxisomal, microsomal and plasma membrane car- (3,7,11,15-tetramethylhexadecanoic acid) were converted to co- nitine acyl transferases [8,10,13]. Therefore, in order to under- enzyme A thioesters by rat liver mitochondrial outer membranes. However, these branched chain fatty acids could not be converted stand the role of CPTI in fatty acid oxidation, CPTI must be to pristanoyl and phytanoyl carnitines, respectively, by mitochon- separated from other carnitine acyl transferases. In view of the drial outer membranes. As expected, the unbranched long chain difficulties in isolating CPTI in the active state, we decided to fatty acids, stearic acid and palmitic acid, were rapidly converted investigate CPTI activity in highly purified mitochondrial outer to stearoyl and palmitoyl carnitines, respectively, by mitochon- membranes from rat liver. We present evidence that branched drial outer membranes. These observations indicate that the chain fatty acids with ~- or fl-methyl groups are poor substrates branched chain fatty acids could not be transported into mito- for CPTI, suggesting that these branched chain fatty acids chondria. -
Ataxia with Loss of Purkinje Cells in a Mouse Model for Refsum Disease
Ataxia with loss of Purkinje cells in a mouse model for Refsum disease Sacha Ferdinandussea,1,2, Anna W. M. Zomerb,1, Jasper C. Komena, Christina E. van den Brinkb, Melissa Thanosa, Frank P. T. Hamersc, Ronald J. A. Wandersa,d, Paul T. van der Saagb, Bwee Tien Poll-Thed, and Pedro Britesa Academic Medical Center, Departments of aClinical Chemistry (Laboratory of Genetic Metabolic Diseases) and dPediatrics, Emma’s Children Hospital, University of Amsterdam, 1105 AZ Amsterdam, The Netherlands; bHubrecht Institute, Royal Netherlands Academy of Arts and Sciences 3584 CT Utrecht, The Netherlands; and cRehabilitation Hospital ‘‘De Hoogstraat’’ Rudolf Magnus Institute of Neuroscience, 3584 CG Utrecht, The Netherlands Edited by P. Borst, The Netherlands Cancer Institute, Amsterdam, The Netherlands, and approved October 3, 2008 (received for review June 23, 2008) Refsum disease is caused by a deficiency of phytanoyl-CoA hy- Clinically, Refsum disease is characterized by cerebellar droxylase (PHYH), the first enzyme of the peroxisomal ␣-oxidation ataxia, polyneuropathy, and progressive retinitis pigmentosa, system, resulting in the accumulation of the branched-chain fatty culminating in blindness, (1, 3). The age of onset of the symptoms acid phytanic acid. The main clinical symptoms are polyneuropathy, can vary from early childhood to the third or fourth decade of cerebellar ataxia, and retinitis pigmentosa. To study the patho- life. No treatment is available for patients with Refsum disease, genesis of Refsum disease, we generated and characterized a Phyh but they benefit from a low phytanic acid diet. Phytanic acid is knockout mouse. We studied the pathological effects of phytanic derived from dietary sources only, specifically from the chloro- acid accumulation in Phyh؊/؊ mice fed a diet supplemented with phyll component phytol. -
Oxidation of Pristanic Acid in Fibroblasts and Its Application to the Diagnosis of Peroxisomal -Oxidation Defects
Oxidation of Pristanic Acid in Fibroblasts and Its Application to the Diagnosis of Peroxisomal -Oxidation Defects Barbara C. Paton,* Peter C. Sharp,* Denis I. Crane,‡ and Alf Poulos* *Department of Chemical Pathology, Women’s and Children’s Hospital, North Adelaide, South Australia 5006; and ‡Faculty of Science and Technology, Griffith University, Nathan, Queensland 4111, Australia Abstract phology of peroxisomes in their tissues is accompanied by a series of biochemical abnormalities. Subsequent complemen- Pristanic acid oxidation measurements proved a reliable tation analyses have indicated that the three clinical pheno- tool for assessing complementation in fused heterokaryons types can arise from defects in a single gene (1, 2). In addition, from patients with peroxisomal biogenesis defects. We, in spite of all of these patients sharing the same series of bio- therefore, used this method to determine the complementa- chemical abnormalities, it is now clear that the peroxisomal tion groups of patients with isolated defects in peroxisomal biogenesis disorders, as a group, can result from defects in any -oxidation. The rate of oxidation of pristanic acid was re- of at least 10 genes (2, 3). Recent evidence suggests that three duced in affected cell lines from all of the families with in- of these complementation groups have defects in the import of herited defects in peroxisomal -oxidation, thus excluding peroxisomal matrix proteins via both of the known targeting the possibility of a defective acyl CoA oxidase. Complemen- mechanisms (peroxisomal targeting signals [PTS]1 1 and 2), tation analyses indicated that all of the patients belonged to but that for one of the complementation groups the defect is the same complementation group, which corresponded to restricted to proteins targeted via PTS1 (4). -
LIPID METABOLISM-3 Regulation of Fatty Acid Oxidation
LIPID METABOLISM-3 Regulation of Fatty Acid Oxidation 1. Carnitine shuttle by which fatty acyl groups are carried from cytosolic fatty acyl–CoA into the mitochondrial matrix is rate limiting for fatty acid oxidation and is an important point of regulation. 2. Malonyl-CoA, the first intermediate in the cytosolic biosynthesis of long-chain fatty acids from acetyl-CoA increases in concentration whenever the body is well supplied with carbohydrate; excess glucose that cannot be oxidized or stored as glycogen is converted in the cytosol into fatty acids for storage as triacylglycerol. The inhibition of CAT I by malonyl-CoA ensures that the oxidation of fatty acids is inhibited whenever the liver is actively making triacylglycerols from excess glucose. Two of the enzymes of β-oxidation are also regulated by metabolites that signal energy sufficiency. 3. When the [NADH]/[NAD+] ratio is high, β- hydroxyacyl-CoA dehydrogenase is inhibited; 4. When acetyl-CoA concentration is high, thiolase is inhibited. 5. During periods of vigorous muscle contraction or during fasting, the fall in [ATP] and the rise in [AMP] activate the AMP-activated protein kinase (AMPK). AMPK phosphorylates several target enzymes, including acetyl-CoA carboxylase (ACC), which catalyzes malonyl-CoA synthesis. Phosphorylation and inhibition of ACC lowers the concentration of malonyl-CoA, relieving the inhibition of acyl–carnitine transport into mitochondria and allowing oxidation to replenish the supply of ATP. MITOCHONDRIA PEROXISOME Respiratory chain Respiratory chain Out of organel To citric acid cycle Out of organel Comparison of mitochondrial and peroxisomal beta-oxidation • Another important difference between mitochondrial and peroxisomal oxidation in mammals is in the specificity for fatty acyl– CoAs; the peroxisomal system is much more active on very-long-chain fatty acids such as hexacosanoic acid (26:0) and on branched chain fatty acids such as phytanic acid and pristanic acid. -
GRAS Notice (GRN) No. 761, Esterified Propoxylated Glycerol
GRAS Notice (GRN) No. 761 https://www.fda.gov/food/generally-recognized-safe-gras/gras-notice-inventory February 20, 2018 Office ofFood Additive Safety HFS-200 Center for foodSafetyand Applied Nutrition food and Drug Administratioo 5001 Campus Drive College Park, MD, 20740 Dear Sir or Madam: Accompanying this letterisa notice pursuantto regulationsofthe Food and Orug Administration found at 21 CFR Part 170 settingforth the basis forthe conclusion reached by the submitter, Choco Finesse, LLC, that esterified propoxylated glycerol (EPG) is generally recognized as safe underthe intended conditions ofuse described in the notice. The notice is contained in a binder. In addition, we include a CD that contains a complete copyofthe notice. I hereby certify thatthe electronicfilescontained onthe flash drivewere scanned forviruses priorto submission, and thuscertified as beingvirus-free using Symantec Endpoint Protection. Sine I,/ .. (b) (6) '---'--------..... David Rowe President Phone: 317-694-3601 Email: drowe@chocofi nesse .com Ft -1 2 2 2018 z., ,..,.. ,. ; FOOD ADDITivE SAFETY GRAS NOTICE FOR ESTERIFIED PROPOXYLATED GLVCEROL {EPG) FOR USE IN SELECT COMMERCIAL FRYING APPLICATIONS Prepared for: Office of Food Additive Safety (HFS-200} Center for Food Safety and Applied Nutrition Food and Drug Administration 5001 Campus Drive College Park, MD 20740 Prepared by: Choco Finesse, LLC 5019 N. Meridian Street Indianapolis, Indiana 46208 February 20, 2018 rR1~~~~~~[Q) FEB 2 2 2018 OFFICE OF FOOD ADDmVE SAFETY GRAS Notice for Esterified Propoxylated Glycerol (EPG) for Use in Select Commercial Frying Applications TABLE OF CONTENTS Part 1. §170.225 Signed Statements and Certification ..................................................................................... 4 1.1 Name and Address of Notifier .................................................................................................. 4 1.2 Common Name of Notified Substance .................................................................................... -
Peroxisomal Trans-2-Enoyl-Coa Reductase Is Involved in Phytol Degradation
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Elsevier - Publisher Connector FEBS Letters 580 (2006) 2092–2096 Peroxisomal trans-2-enoyl-CoA reductase is involved in phytol degradation J. Gloerich, J.P.N. Ruiter, D.M. van den Brink, R. Ofman, S. Ferdinandusse, R.J.A. Wanders* Laboratory Genetic Metabolic Diseases (F0-224), Departments of Clinical Chemistry and Pediatrics, Emma’s Children’s Hospital, Academic Medical Center, University of Amsterdam, Meibergdreef 9, 1105 AZ Amsterdam, The Netherlands Received 15 February 2006; accepted 4 March 2006 Available online 10 March 2006 Edited by Sandro Sonnino the peroxisomal acyl-CoA oxidases anymore. For further Abstract Phytol is a naturally occurring precursor of phytanic acid. The last step in the conversion of phytol to phytanoyl-CoA breakdown, the chain-shortened product is transported to is the reduction of phytenoyl-CoA mediated by an, as yet, the mitochondrion [3], where it is totally degraded to acetyl- unidentified enzyme. A candidate for this reaction is a previously CoA and propionyl-CoA units [4]. Besides breakdown of described peroxisomal trans-2-enoyl-CoA reductase (TER). To pristanic acid, peroxisomal b-oxidation is also involved in investigate this, human TER was expressed in E. coli as an the degradation of very long-chain fatty acids, long-chain MBP-fusion protein. The purified recombinant protein was dicarboxylic acids and bile acid intermediates [4]. shown to have high reductase activity towards trans-phytenoyl- Another metabolic process that recently has been shown to CoA, but not towards the peroxisomal b-oxidation intermediates occur, at least partly, in the peroxisome is the degradation of C24:1-CoA and pristenoyl-CoA. -
PHYH Gene Phytanoyl-Coa 2-Hydroxylase
PHYH gene phytanoyl-CoA 2-hydroxylase Normal Function The PHYH gene provides instructions for making an enzyme called phytanoyl-CoA hydroxylase. This enzyme is critical for the normal function of cell structures called peroxisomes. These sac-like compartments contain enzymes needed to break down many different substances, including fatty acids and certain toxic compounds. One substance that is broken down in peroxisomes is phytanic acid, a type of fatty acid obtained from the diet (particularly from beef and dairy products). Phytanoyl-CoA hydroxylase is responsible for one of the first steps in breaking down phytanic acid as part of a process known as alpha-oxidation. In subsequent steps, additional enzymes in peroxisomes and other parts of the cell further process this compound into smaller molecules that the body can use for energy. Researchers suspect that phytanoyl-CoA hydroxylase may have other functions in addition to its role in breaking down phytanic acid. For example, this enzyme appears to help determine the number of peroxisomes within cells and is involved in regulating their activity. Health Conditions Related to Genetic Changes Refsum disease Mutations in the PHYH gene have been found to cause more than 90 percent of all cases of Refsum disease. About 30 mutations in this gene have been identified. These mutations alter the structure or production of phytanoyl-CoA hydroxylase, which reduces the enzyme's activity. A shortage of this enzyme disrupts the breakdown of phytanic acid in peroxisomes. As a result, phytanic acid and related compounds build up in the body's tissues. The accumulation of phytanic acid is toxic to cells, although it is unclear how an excess of this substance affects vision and smell and causes the other specific features of Refsum disease. -
Tetrahydrogeranylgeraniol, a Precursor of Phytol in The
Tetrahydrogeranylgeraniol, a Precursor of Phytol in the Biosynthesis of Chlorophyll a — Localization of the Double Bonds Siegrid Schoch and Wolfram Schäfer Botanisches Institut der Universität München, München und Max-Planck-Institut für Biochemie, Martinsried Z. Naturforsch. 33 c, 408—412 (1978) ; received March 23, 1978 Dedicated to Prof. Dr. A. Butenandt on the Occasion of His 75. Birthday Avena sativa, Gramineae, Oats, Chlorophyll Biosynthesis, Phytol Pheophytins esterified with phytol and tetrahydrogeranylgeraniol are isolated from etiolated oat seedlings after short (1 min) exposure to light and a subsequent dark period of 15 to 20 min. After saponification of the pheophytins, a mixture of the alcohols was isolated. The structure of tetra hydrogeranylgeraniol was established as 3,7,11,15-tetramethyl-zl2’14 hexadecadiene-l-ol (3a). The implications for chlorophyll biosynthesis are discussed. Introduction The number of double bonds in the alcohols have been established from the molecular ions in their During our research on the last steps of chloro mass spectra [3, 4]. The heaviest alcohol is P (4), phyll biosynthesis, we could isolate pheophytins the alcohols THGG (3), DHGG (2) and GG (1) which are esterified with not only phytol (P), but are smaller by 2, 4 and 6 mass units respectively. also with tetrahydrogeranylgeraniol (THGG), dihy- To further evaluate this sequence it is necessary drogeranylgeraniol (DHGG) and geranylgeraniol to establish the order of hydrogenation of the three (GG) [1]. double bonds zl-6, A-10, A-\4> when transforming Based on these findings, a biosynthetic sequence GG to P. has been proposed, in which chlorophyllide a is first As the pigments were available only in small esterified to Chl^G • This pigment should then hy amounts (5 — 10nmol/g fresh weight), the alcohols drogenated successively to CMdiigg > CIiIthgg and were identified and the double bonds localized by finally to Chip [1], The activated alcohol substrate gc-ms technique combined with microchemical proce for the esterification is probably geranylgeraniol- dures. -
Thermal Alteration of Organic Matter in Recent Marine Sediments
THERMAL ALTERATION OF ORGANIC MATTER IN RECENT MARINE SEDIMENTS II. ISOPRENOIDS 1 R. Ikan 2 , M.J. Baedecker an I.R. Kaplan Department of Geophysics and Planetary Physics University of California Los Angeles, California 90024 (NASA-CR-139195) THERHAL ALTERATION OF N74- 30839' ORGANIC HATTER IN RECENT BARINE SEDIHENTS. 2: ISOPRENOIDS (California Univ.) 45 p r'- CSCL 08J Unclas - G3/13 46340 Reproduced by NATIONAL TECHNICAL INFORMATION SERVICE US Department of Commerce Springfield, VA. 22151 Publication No. 1244: Institute of Geophysics & Planetary Physics University of California, Los Angeles, California 90024 Permanent address: Department of Organic Chemistry, Natural Products Laboratory, Hebrew University Jerusa lern, Israel ABSTRACT A series of isoprenoid compounds were isolated from a heat-treated marine sediment (from Tanner Basin) which were not present in the original sediment. Among the compounds identified were: phytol, dihydrophytol, C,,-isoprenoid ketone, phytanic and pristanic acids, C19 - and Co0 -monoolefines, and the alkanes pristane and phytane. The significance and possible routes leading to these compounds is discussed. 2. INTRODUCTION Ever since Bendoraitis et al. (1962) first isolated pristane (2,6,10,14-tetramethylpentadecane) from crude oil in concentrations equal to 0.5% of the total, there has been considerable discussion on the origin of the -isoprenoid hydrocarbons 'in sediments and in petroleum. The two major isoprenoid hydrocarbons normally detected are pristane and phytane (2,6, 10, 14-tetramethylhexadecane), although Cl8 , C16 and CI5 alkanes are also common in oil shales and crude oil, and in some environments, these become the dominant branched hydrocarbons (Arpino et al. 1972). Bendoraitis et al. (1962) believed that the starting compound was chlorophyll from which the phytyl side chain is cleaved and subsequently oxidized to an acid and finally decarboxylated to the C 19 alkane.