Thermal Alteration of Organic Matter in Recent Marine Sediments
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Characterization of N-Alkanes, Pristane and Phytane in the Cretaceous/ Tertiary Boundary Sediments at Kawaruppu, Hokkaido, Japan
Geochemical Journal, Vol. 33, pp. 285 to 294, 1999 Characterization of n-alkanes, pristane and phytane in the Cretaceous/ Tertiary boundary sediments at Kawaruppu, Hokkaido, Japan HAJIME MITA and AKIRA SHIMOYAMA Department of Chemistry, University of Tsukuba, Tsukuba 305-8571, Japan (Received December 24, 1998; Accepted April 22 , 1999) Normal alkanes from C12 to C36, pristane and phytane were identified in the Cretaceous/Tertiary (K/T) boundary sediments at Kawaruppu, Hokkaido, Japan. These compounds were found at the levels of sub to a few nmol g-1. Total concentrations of the n-alkanes within the boundary claystone were generally one third to one half of those in the sediments above and below the claystone. The smaller concentrations within the claystone were mainly due to smaller concentrations of longer chain n-alkanes (C25 to C31) than in the sediments above and below it. The longer chain n-alkanes were likely from terrestrial plants and reflected their small population at the end of Cretaceous. The concentration of longer chain n-alkanes decreased rapidly at the base of the boundary claystone, indicating the sudden cease of terrestrial n-alkane input, continued low to the horizon at the upper two thirds of the claystone and then, started increasing toward the top of the claystone. The n-alkane concentration change indicates the period of the small input of terrestrial n-alkanes to be ca. 7,000 years at most and the recovery period to be ca. 2,000 years. The depth distribution pattern of pristane plus phytane concentrations in the K/T sediments roughly resembles that of the n-alkanes. -
Carbon Geochemistry of Serpentinites in the Lost City Hydrothermal System (30°N, MAR)
Available online at www.sciencedirect.com Geochimica et Cosmochimica Acta 72 (2008) 3681–3702 www.elsevier.com/locate/gca Carbon geochemistry of serpentinites in the Lost City Hydrothermal System (30°N, MAR) Ade´lie Delacour a,*, Gretchen L. Fru¨h-Green a, Stefano M. Bernasconi b, Philippe Schaeffer c, Deborah S. Kelley d a Institute for Mineralogy and Petrology, ETH Zurich, CH-8092 Zurich, Switzerland b Geological Institute, ETH Zurich, CH-8092 Zurich, Switzerland c Laboratoire de Ge´ochimie Bioorganique, UMR 7177 du CNRS, Universite´ Louis Pasteur, Strasbourg, France d School of Oceanography, University of Washington, Seattle, WA 98195, USA Received 18 June 2007; accepted in revised form 30 April 2008; available online 24 May 2008 Abstract The carbon geochemistry of serpentinized peridotites and gabbroic rocks recovered at the Lost City Hydrothermal Field (LCHF) and drilled at IODP Hole 1309D at the central dome of the Atlantis Massif (Mid-Atlantic Ridge, 30°N) was exam- ined to characterize carbon sources and speciation in oceanic basement rocks affected by long-lived hydrothermal alteration. Our study presents new data on the geochemistry of organic carbon in the oceanic lithosphere and provides constraints on the fate of dissolved organic carbon in seawater during serpentinization. The basement rocks of the Atlantis Massif are charac- 13 terized by total carbon (TC) contents of 59 ppm to 1.6 wt% and d CTC values ranging from À28.7& to +2.3&. In contrast, 13 total organic carbon (TOC) concentrations and isotopic compositions are relatively constant (d CTOC: À28.9& to À21.5&) 13 and variations in d CTC reflect mixing of organic carbon with carbonates of marine origin. -
Abstract DRAYTON, JOSEPHINE BENTLEY
Abstract DRAYTON, JOSEPHINE BENTLEY. Methylated Medium- and Long-Chain Fatty Acids as Novel Sources of Anaplerotic Carbon for Exercising Mice. (Under the direction of Dr. Jack Odle and Dr. Lin Xi.) We hypothesized that methylated fatty acids (e.g. 2-methylpentanoic acid (2MeP), phytanic acid or pristanic acid) would provide a novel source of anaplerotic carbon and thereby enhance fatty acid oxidation, especially under stressed conditions when tricarboxylic acid (TCA) cycle intermediates are depleted. The optimal dose of 2MeP, hexanoic acid (C6) and pristanic acid for increasing in vitro [1-14C]-oleic acid oxidation in liver or skeletal muscle homogenates from fasted mice was determined using incremental doses of 0, 0.25, 0.5, 0.75, or 1.0 mM. The 0.25 mM amount maximally stimulated liver tissue oxidation of 14 14 14 [1- C]-oleate to CO2 and [ C]-acid soluble products (ASP; P < 0.05). Similar incubations of 0.25 mM 2MeP, C6, palmitate, phytanic acid, or pristanic acid or 0.1 mM malate or propionyl-CoA were conducted with liver or skeletal muscle homogenates from exercised or sedentary mice. In vitro oxidation of [1-14C]-oleic acid in liver homogenates with 2MeP 14 14 increased mitochondrial CO2 accumulation (P <0.05), but no change in [ C]-ASP accumulation as compared to C6 (P > 0.05). Phytanic acid treatment increased [14C]-ASP accumulation in liver tissue as compared to palmitate (P < 0.05). Exercise increased [14C] accumulations (P < 0.05). Results were consistent with our hypothesis that methyl-branched fatty acids (2-MeP, phytanic and pristanic acids) provide a novel source of anaplerotic carbon and thereby stimulate in vitro fatty acid oxidation in liver and skeletal muscle tissues. -
Lipid Analysis of CO2-Rich Subsurface Aquifers Suggests an Autotrophy-Based Deep Biosphere with Lysolipids Enriched in CPR Bacteria
The ISME Journal (2020) 14:1547–1560 https://doi.org/10.1038/s41396-020-0624-4 ARTICLE Lipid analysis of CO2-rich subsurface aquifers suggests an autotrophy-based deep biosphere with lysolipids enriched in CPR bacteria 1,2 3,4 1,3 3 3 Alexander J. Probst ● Felix J. Elling ● Cindy J. Castelle ● Qingzeng Zhu ● Marcus Elvert ● 5,6 6 1 7,9 7 Giovanni Birarda ● Hoi-Ying N. Holman ● Katherine R. Lane ● Bethany Ladd ● M. Cathryn Ryan ● 8 3 1 Tanja Woyke ● Kai-Uwe Hinrichs ● Jillian F. Banfield Received: 20 November 2018 / Revised: 5 February 2020 / Accepted: 25 February 2020 / Published online: 13 March 2020 © The Author(s) 2020. This article is published with open access Abstract Sediment-hosted CO2-rich aquifers deep below the Colorado Plateau (USA) contain a remarkable diversity of uncultivated microorganisms, including Candidate Phyla Radiation (CPR) bacteria that are putative symbionts unable to synthesize membrane lipids. The origin of organic carbon in these ecosystems is unknown and the source of CPR membrane lipids remains elusive. We collected cells from deep groundwater brought to the surface by eruptions of Crystal Geyser, sequenced 1234567890();,: 1234567890();,: the community, and analyzed the whole community lipidome over time. Characteristic stable carbon isotopic compositions of microbial lipids suggest that bacterial and archaeal CO2 fixation ongoing in the deep subsurface provides organic carbon for the complex communities that reside there. Coupled lipidomic-metagenomic analysis indicates that CPR bacteria lack complete lipid biosynthesis pathways but still possess regular lipid membranes. These lipids may therefore originate from other community members, which also adapt to high in situ pressure by increasing fatty acid unsaturation. -
Stable Carbon and Hydrogen Isotopic Fractionation of Individual N-Alkanes Accompanying Biodegradation: Evidence from a Group of Progressively Biodegraded Oils
中国科技论文在线 http://www.paper.edu.cn Organic Geochemistry 36 (2005) 225–238 Stable carbon and hydrogen isotopic fractionation of individual n-alkanes accompanying biodegradation: evidence from a group of progressively biodegraded oils Yongge Sun a,*, Zhenyan Chen b, Shiping Xu a, Pingxia Cai a a SKLOG, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Wushan, Guangzhou 510640, PR China b Exploration and Development Research Institute of Liaohe Oil Field Branch Company, PetroChina, Panjing, Liaoning 124010, PR China Received 10 March 2004; accepted 16 August 2004 (returned to author for revision 16 April 2004) Available online 11 November 2004 Abstract Seven crude oils of known source and maturity, representing a natural sequence of increasing degree of biodegrada- tion, were collected from reservoirs in the Liaohe Basin, NE China, in an effort to determine the magnitude and direction of isotopic shift of carbon and hydrogen in individual n-alkanes during microbial degradation. The results show that bio- degradation has little effect on the carbon isotopic composition of the whole oil. However, a sequential loss of n-alkanes leads to 13C depletion of the bulk residual saturate fraction. The stable carbon isotopic compositions of aromatics and macromolecular organic matter (resins and asphaltenes) follow a pattern, with an overall trend towards 13C enrichment of 0.8–1.7& in the residues. The stable carbon and hydrogen isotope values of individual n-alkanes demonstrate that they follow different trends during biodegradation. No significant carbon isotopic fractionation occurs for n-alkanes during slight to moderate biodegradation. However, there is a general increase of up to 4& in the d13C values of low molecular weight n-alkanes (C15–C18) during heavy biodegradation. -
Substrate Specificity of Rat Liver Mitochondrial Carnitine Palmitoyl Transferase I: Evidence Against S-Oxidation of Phytanic Acid in Rat Liver Mitochondria
FEBS 15107 FEBS Letters 359 (1995) 179 183 Substrate specificity of rat liver mitochondrial carnitine palmitoyl transferase I: evidence against s-oxidation of phytanic acid in rat liver mitochondria Harmeet Singh*, Alfred Poulos Department of Chemical Pathology, Women's and Children's Hospital 72 King William Road, North Adelaide, SA 5006, Australia Received 23 December 1994 demonstrated that CPTI activity is reversibly inhibited by Abstract The two branched chain fatty acids pristanic acid malonyl-CoA. Recently, it has been shown that malonyl-CoA (2,6,10,14-tetramethylpentadecanoic acid) and phytanic acid inhibits peroxisomal, microsomal and plasma membrane car- (3,7,11,15-tetramethylhexadecanoic acid) were converted to co- nitine acyl transferases [8,10,13]. Therefore, in order to under- enzyme A thioesters by rat liver mitochondrial outer membranes. However, these branched chain fatty acids could not be converted stand the role of CPTI in fatty acid oxidation, CPTI must be to pristanoyl and phytanoyl carnitines, respectively, by mitochon- separated from other carnitine acyl transferases. In view of the drial outer membranes. As expected, the unbranched long chain difficulties in isolating CPTI in the active state, we decided to fatty acids, stearic acid and palmitic acid, were rapidly converted investigate CPTI activity in highly purified mitochondrial outer to stearoyl and palmitoyl carnitines, respectively, by mitochon- membranes from rat liver. We present evidence that branched drial outer membranes. These observations indicate that the chain fatty acids with ~- or fl-methyl groups are poor substrates branched chain fatty acids could not be transported into mito- for CPTI, suggesting that these branched chain fatty acids chondria. -
Ataxia with Loss of Purkinje Cells in a Mouse Model for Refsum Disease
Ataxia with loss of Purkinje cells in a mouse model for Refsum disease Sacha Ferdinandussea,1,2, Anna W. M. Zomerb,1, Jasper C. Komena, Christina E. van den Brinkb, Melissa Thanosa, Frank P. T. Hamersc, Ronald J. A. Wandersa,d, Paul T. van der Saagb, Bwee Tien Poll-Thed, and Pedro Britesa Academic Medical Center, Departments of aClinical Chemistry (Laboratory of Genetic Metabolic Diseases) and dPediatrics, Emma’s Children Hospital, University of Amsterdam, 1105 AZ Amsterdam, The Netherlands; bHubrecht Institute, Royal Netherlands Academy of Arts and Sciences 3584 CT Utrecht, The Netherlands; and cRehabilitation Hospital ‘‘De Hoogstraat’’ Rudolf Magnus Institute of Neuroscience, 3584 CG Utrecht, The Netherlands Edited by P. Borst, The Netherlands Cancer Institute, Amsterdam, The Netherlands, and approved October 3, 2008 (received for review June 23, 2008) Refsum disease is caused by a deficiency of phytanoyl-CoA hy- Clinically, Refsum disease is characterized by cerebellar droxylase (PHYH), the first enzyme of the peroxisomal ␣-oxidation ataxia, polyneuropathy, and progressive retinitis pigmentosa, system, resulting in the accumulation of the branched-chain fatty culminating in blindness, (1, 3). The age of onset of the symptoms acid phytanic acid. The main clinical symptoms are polyneuropathy, can vary from early childhood to the third or fourth decade of cerebellar ataxia, and retinitis pigmentosa. To study the patho- life. No treatment is available for patients with Refsum disease, genesis of Refsum disease, we generated and characterized a Phyh but they benefit from a low phytanic acid diet. Phytanic acid is knockout mouse. We studied the pathological effects of phytanic derived from dietary sources only, specifically from the chloro- acid accumulation in Phyh؊/؊ mice fed a diet supplemented with phyll component phytol. -
Development of Compound-Specific Hydrogen Isotope Ratio Analysis Of
Development of Compound-Specific Hydrogen Isotope Ratio Analysis of Biomarkers and their Application as New Proxy for Reconstruction of Palaeoenvironment and Palaeoclimate Entwicklung komponentenspezifischer Wasserstoffisotopen- Analyse von Biomarkern und deren Anwendung als neuartiger Proxy zur Rekonstruktion von Paläoumwelt und Paläoklima Dissertation zur Erlangung des akademischen Grades doctor rerum naturalium (Dr. rer. nat.) vorgelegt dem Rat der Chemisch-Geowissenschaftlichen Fakultät der Friedrich-Schiller-Universität Jena von Diplom Geologe Jens Radke geboren am 20.2.1967 in Bremerhaven Gutachter: 1. Prof.Dr.R.Gaupp 2. PD.Dr.G.Gleixner Tag der öffentlichen Verteidigung: 18.1.2006 Printed on 100% recycled paper (after ISO9706, 133 CIE, DIN 6738 LDK 24-85) Content Content ABSTRACT KURZFASSUNG ABBREVIATIONS 1 INTRODUCTION ......................................................................................................... 1 2 FRACTIONATION OF WATER ISOTOPES IN THE ENVIRONMENT ........................................ 2 2.1 Fractionation of water isotopes in the climate system......................................... 2 2.2 Fractionation of hydrogen in the biosynthesis of plant biomass.......................... 3 3 SEDIMENTS AND METHODS........................................................................................ 6 3.1 Sediment samples and stratigraphic framework ................................................. 6 3.2 Sample preparation for bulk and compound specific analysis ............................ 8 3.2.1 Sample -
Determination of Petroleum Hydrocarbons in Sediments
UNITED NATIONS ENVIRONMENT PROGRAMME NOVEMBER 1992 Determination of petroleum hydrocarbons in sediments Reference Methods For Marine Pollution Studies No. 20 Prepared in co-operation with IOC IAEA UNEP 1992 ~ i - PREFACE The Regional Seas Programme was initiated by UNEP in 1974. Since then the Governing Conncil ofUNEP has repeatedly endorsed a regional approach to the control of marine pollution and the management of marine and coastal resources and has requested the development of regional action plans. The Regional Seas Progranune at present includes ten regions and has over 120 coastal States participating in it (1),(2). One of the basic components of the action plans sponsored by UNEP in the framework of the Regional Seas Programme is the assessment of the state of the marine em~ronment and of its resources, and of the sources and trends of the pollution, and the impact of pollution on human health, marine ecosystems and amenities. In order to assist those participating in this activity and to ensure that the data obtained through this assessment can be compared. on a world-wide basis and thns contribute to the Global Environment Monitoring System (GEMS) of UNEP, a set of Reference Methods and Guidelines for marine pollution studies is being developed as part of a programme of c9mprehensive technical support which includes the provision of expert advice, reference methods and materials, training and data quality assurance (3). The Methods are recommended to be adopted by Governments participating in tbe Regional Seas Programme. The methods and guidelines are prepared in co-operation with the relevant specialized bodies of the United Nations system as well as other organizations and are tested by a number of experts competent in the field relevant to the methods described. -
Oxidation of Pristanic Acid in Fibroblasts and Its Application to the Diagnosis of Peroxisomal -Oxidation Defects
Oxidation of Pristanic Acid in Fibroblasts and Its Application to the Diagnosis of Peroxisomal -Oxidation Defects Barbara C. Paton,* Peter C. Sharp,* Denis I. Crane,‡ and Alf Poulos* *Department of Chemical Pathology, Women’s and Children’s Hospital, North Adelaide, South Australia 5006; and ‡Faculty of Science and Technology, Griffith University, Nathan, Queensland 4111, Australia Abstract phology of peroxisomes in their tissues is accompanied by a series of biochemical abnormalities. Subsequent complemen- Pristanic acid oxidation measurements proved a reliable tation analyses have indicated that the three clinical pheno- tool for assessing complementation in fused heterokaryons types can arise from defects in a single gene (1, 2). In addition, from patients with peroxisomal biogenesis defects. We, in spite of all of these patients sharing the same series of bio- therefore, used this method to determine the complementa- chemical abnormalities, it is now clear that the peroxisomal tion groups of patients with isolated defects in peroxisomal biogenesis disorders, as a group, can result from defects in any -oxidation. The rate of oxidation of pristanic acid was re- of at least 10 genes (2, 3). Recent evidence suggests that three duced in affected cell lines from all of the families with in- of these complementation groups have defects in the import of herited defects in peroxisomal -oxidation, thus excluding peroxisomal matrix proteins via both of the known targeting the possibility of a defective acyl CoA oxidase. Complemen- mechanisms (peroxisomal targeting signals [PTS]1 1 and 2), tation analyses indicated that all of the patients belonged to but that for one of the complementation groups the defect is the same complementation group, which corresponded to restricted to proteins targeted via PTS1 (4). -
Upper Jurassic–Lower Cretaceous Source Rocks in the North Of
geosciences Article Upper Jurassic–Lower Cretaceous Source Rocks in the North of Western Siberia: Comprehensive Geochemical Characterization and Reconstruction of Paleo-Sedimentation Conditions Evgeniya Leushina 1,* , Timur Bulatov 1 , Elena Kozlova 1, Ivan Panchenko 2 , Andrey Voropaev 3, Tagir Karamov 1, Yakov Yermakov 1, Natalia Bogdanovich 1 and Mikhail Spasennykh 1 1 Skolkovo Institute of Science and Technology, Territory of Innovation Center “Skolkovo”, Bolshoy Boulevard 30, Bld. 1, 121205 Moscow, Russia; [email protected] (T.B.); [email protected] (E.K.); [email protected] (T.K.); [email protected] (Y.Y.); [email protected] (N.B.); [email protected] (M.S.) 2 MIMGO, Entuziastov Highway 21, 111123 Moscow, Russia; [email protected] 3 HYDROISOTOP GmbH, Woelkestr. 9, 85301 Schweitenkirchen, Germany; [email protected] * Correspondence: [email protected] Abstract: The present work is devoted to geochemical studies of the Bazhenov Formation in the north of the West Siberian Petroleum Basin. The object is the Upper Jurassic–Lower Cretaceous section, characterized by significant variations in total organic carbon content and petroleum gener- Citation: Leushina, E.; Bulatov, T.; ation potential of organic matter at the beginning of the oil window. The manuscript presents the Kozlova, E.; Panchenko, I.; Voropaev, integration of isotopic and geochemical analyses aimed at the evaluation of the genesis of the rocks in A.; Karamov, T.; Yermakov, Y.; the peripheral part of the Bazhenov Sea and reconstruction of paleoenvironments that controlled the Bogdanovich, N.; Spasennykh, M. accumulation of organic matter in sediments, its composition and diagenetic alterations. According Upper Jurassic–Lower Cretaceous to the obtained data, the sediments were accumulated under marine conditions with a generally Source Rocks in the North of Western moderate and periodically increasing terrigenous influx. -
LIPID METABOLISM-3 Regulation of Fatty Acid Oxidation
LIPID METABOLISM-3 Regulation of Fatty Acid Oxidation 1. Carnitine shuttle by which fatty acyl groups are carried from cytosolic fatty acyl–CoA into the mitochondrial matrix is rate limiting for fatty acid oxidation and is an important point of regulation. 2. Malonyl-CoA, the first intermediate in the cytosolic biosynthesis of long-chain fatty acids from acetyl-CoA increases in concentration whenever the body is well supplied with carbohydrate; excess glucose that cannot be oxidized or stored as glycogen is converted in the cytosol into fatty acids for storage as triacylglycerol. The inhibition of CAT I by malonyl-CoA ensures that the oxidation of fatty acids is inhibited whenever the liver is actively making triacylglycerols from excess glucose. Two of the enzymes of β-oxidation are also regulated by metabolites that signal energy sufficiency. 3. When the [NADH]/[NAD+] ratio is high, β- hydroxyacyl-CoA dehydrogenase is inhibited; 4. When acetyl-CoA concentration is high, thiolase is inhibited. 5. During periods of vigorous muscle contraction or during fasting, the fall in [ATP] and the rise in [AMP] activate the AMP-activated protein kinase (AMPK). AMPK phosphorylates several target enzymes, including acetyl-CoA carboxylase (ACC), which catalyzes malonyl-CoA synthesis. Phosphorylation and inhibition of ACC lowers the concentration of malonyl-CoA, relieving the inhibition of acyl–carnitine transport into mitochondria and allowing oxidation to replenish the supply of ATP. MITOCHONDRIA PEROXISOME Respiratory chain Respiratory chain Out of organel To citric acid cycle Out of organel Comparison of mitochondrial and peroxisomal beta-oxidation • Another important difference between mitochondrial and peroxisomal oxidation in mammals is in the specificity for fatty acyl– CoAs; the peroxisomal system is much more active on very-long-chain fatty acids such as hexacosanoic acid (26:0) and on branched chain fatty acids such as phytanic acid and pristanic acid.