Cyto Taxonomy
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Glossary - Cellbiology
1 Glossary - Cellbiology Blotting: (Blot Analysis) Widely used biochemical technique for detecting the presence of specific macromolecules (proteins, mRNAs, or DNA sequences) in a mixture. A sample first is separated on an agarose or polyacrylamide gel usually under denaturing conditions; the separated components are transferred (blotting) to a nitrocellulose sheet, which is exposed to a radiolabeled molecule that specifically binds to the macromolecule of interest, and then subjected to autoradiography. Northern B.: mRNAs are detected with a complementary DNA; Southern B.: DNA restriction fragments are detected with complementary nucleotide sequences; Western B.: Proteins are detected by specific antibodies. Cell: The fundamental unit of living organisms. Cells are bounded by a lipid-containing plasma membrane, containing the central nucleus, and the cytoplasm. Cells are generally capable of independent reproduction. More complex cells like Eukaryotes have various compartments (organelles) where special tasks essential for the survival of the cell take place. Cytoplasm: Viscous contents of a cell that are contained within the plasma membrane but, in eukaryotic cells, outside the nucleus. The part of the cytoplasm not contained in any organelle is called the Cytosol. Cytoskeleton: (Gk. ) Three dimensional network of fibrous elements, allowing precisely regulated movements of cell parts, transport organelles, and help to maintain a cell’s shape. • Actin filament: (Microfilaments) Ubiquitous eukaryotic cytoskeletal proteins (one end is attached to the cell-cortex) of two “twisted“ actin monomers; are important in the structural support and movement of cells. Each actin filament (F-actin) consists of two strands of globular subunits (G-Actin) wrapped around each other to form a polarized unit (high ionic cytoplasm lead to the formation of AF, whereas low ion-concentration disassembles AF). -
Liliaceae S.L. (Lily Family)
Liliaceae s.l. (Lily family) Photo: Ben Legler Photo: Hannah Marx Photo: Hannah Marx Lilium columbianum Xerophyllum tenax Trillium ovatum Liliaceae s.l. (Lily family) Photo: Yaowu Yuan Fritillaria lanceolata Ref.1 Textbook DVD KRR&DLN Erythronium americanum Allium vineale Liliaceae s.l. (Lily family) Herbs; Ref.2 Stems often modified as underground rhizomes, corms, or bulbs; Flowers actinomorphic; 3 sepals and 3 petals or 6 tepals, 6 stamens, 3 carpels, ovary superior (or inferior). Tulipa gesneriana Liliaceae s.l. (Lily family) “Liliaceae” s.l. (sensu lato: “in the broad sense”) - Lily family; 288 genera/4950 species, including Lilium, Allium, Trillium, Tulipa; This family is treated in a very broad sense in this class, as in the Flora of the Pacific Northwest. The “Liliaceae” s.l. taught in this class is not monophyletic. It is apparent now that the family should be treated in a narrower sense and some of the members should form their own families. Judd et al. recognize 15+ families: Agavaceae, Alliaceae, Amarylidaceae, Asparagaceae, Asphodelaceae, Colchicaceae, Dracaenaceae (Nolinaceae), Hyacinthaceae, Liliaceae, Melanthiaceae, Ruscaceae, Smilacaceae, Themidaceae, Trilliaceae, Uvulariaceae and more!!! (see web reading “Consider the Lilies”) Iridaceae (Iris family) Photo: Hannah Marx Photo: Hannah Marx Iris pseudacorus Iridaceae (Iris family) Photo: Yaowu Yuan Photo: Yaowu Yuan Sisyrinchium douglasii Sisyrinchium sp. Iridaceae (Iris family) Iridaceae - 78 genera/1750 species, Including Iris, Gladiolus, Sisyrinchium. Herbs, aquatic or terrestrial; Underground stems as rhizomes, bulbs, or corms; Leaves alternate, 2-ranked and equitant Ref.3 (oriented edgewise to the stem; Gladiolus italicus Flowers actinomorphic or zygomorphic; 3 sepals and 3 petals or 6 tepals; Stamens 3; Ovary of 3 fused carpels, inferior. -
Mnemonic Memory Taxonomy
MNEMONIC MEMORY TAXONOMY Overview: In this lesson, students determine proper classification of organisms according to taxonomic levels, explore characteristics that determine classification, and create methods to recall ordered taxonomic terminology. Objectives: The student will: • describe the use and function of a taxonomy, specifically to order and classify living organisms; and • identify and list taxonomic levels of biological classification. Targeted Alaska Grade Level Expectations: Science [7] SC2.2 The student demonstrates an understanding of the structure, function, behavior, development, life cycles, and diversity of living organisms by identifying the seven levels of classification of organisms. [7] SA1.1 The student demonstrates an understanding of the processes of science by asking questions, predicting, observing, describing, measuring, classifying, makign generalizations, inferring, and communicating. Vocabulary: animalia— one of six kingdoms, including most living things that are able to move and digest food internally plantae –one of six kingdoms, including living things that generally manufacture their own food through the use of photosynthesis fungi – one of six kingdoms, mostly living things that are nonmobile and assist in the decomposition process, including yeasts, molds, and mushrooms binomial nomenclature – a scientific naming system that gives a unique name (“scientific name”) to each species, using organisms’ genus and species as its two parts (e.g., “Homo sapiens” for humans) class – a taxonomic rank below -
Rapid Assay Replicate
Algae Analysis Report and Data Set Customer ID: 000 Tracking Code: 200014-000 Sample ID: Rapid Assay Replicate: . Customer ID: 000 Sample Date: 4/30/2020 Sample Level: Epi Job ID: 1 Station: Sample Station Sample Depth: 0 System Name: Sample Lake Site: Sample Site Preservative: Glutaraldehyde Report Notes: Sample Report Note Division: Bacillariophyta Taxa ID Genus Species Subspecies Variety Form Morph Structure Relative Concentration 1109 Diatoma tenuis . Vegetative 1.00 1000936 Lindavia intermedia . Vegetative 18.00 9123 Nitzschia palea . Vegetative 1.00 1293 Stephanodiscus niagarae . Vegetative 2.00 Summary for Division ~ Bacillariophyta (4 detail records) Sum Total Bacillariophyta 22.00 Division: Chlorophyta Taxa ID Genus Species Subspecies Variety Form Morph Structure Relative Concentration 2683 *Chlorococcaceae spp . 2-9.9 um Vegetative 1.00 spherical 2491 Schroederia judayi . Vegetative 25.00 Summary for Division ~ Chlorophyta (2 detail records) Sum Total Chlorophyta 26.00 = Identification is Uncertain 200014-000 Monday, January 18, 2021 * = Family Level Identification Phytoplankton - Rapid Assay Page 2 of 13 Division: Cryptophyta Taxa ID Genus Species Subspecies Variety Form Morph Structure Relative Concentration 3015 Cryptomonas erosa . Vegetative 15.00 3043 Rhodomonas minuta . nannoplanctica . Vegetative 2.00 Summary for Division ~ Cryptophyta (2 detail records) Sum Total Cryptophyta 17.00 Division: Cyanophyta Taxa ID Genus Species Subspecies Variety Form Morph Structure Relative Concentration 4041 Aphanizomenon flos-aquae . -
Revised Glossary for AQA GCSE Biology Student Book
Biology Glossary amino acids small molecules from which proteins are A built abiotic factor physical or non-living conditions amylase a digestive enzyme (carbohydrase) that that affect the distribution of a population in an breaks down starch ecosystem, such as light, temperature, soil pH anaerobic respiration respiration without using absorption the process by which soluble products oxygen of digestion move into the blood from the small intestine antibacterial chemicals chemicals produced by plants as a defence mechanism; the amount abstinence method of contraception whereby the produced will increase if the plant is under attack couple refrains from intercourse, particularly when an egg might be in the oviduct antibiotic e.g. penicillin; medicines that work inside the body to kill bacterial pathogens accommodation ability of the eyes to change focus antibody protein normally present in the body acid rain rain water which is made more acidic by or produced in response to an antigen, which it pollutant gases neutralises, thus producing an immune response active site the place on an enzyme where the antimicrobial resistance (AMR) an increasing substrate molecule binds problem in the twenty-first century whereby active transport in active transport, cells use energy bacteria have evolved to develop resistance against to transport substances through cell membranes antibiotics due to their overuse against a concentration gradient antiretroviral drugs drugs used to treat HIV adaptation features that organisms have to help infections; they -
8 April 2021 Mr. Jon Kurland Assistant
8 April 2021 Mr. Jon Kurland Assistant Regional Administrator Protected Resources Division, Alaska Region National Marine Fisheries Service P.O. Box 21668 Juneau, Alaska 99082-1668 Dear Mr. Kurland: The Marine Mammal Commission (the Commission), in consultation with its Committee of Scientific Advisors on Marine Mammals, has reviewed the National Marine Fisheries Service’s (NMFS) 8 January 2021 Federal Register notice (86 Fed. Reg. 1452) revising its proposed designation of critical habitat for Arctic ringed seals (Phoca hispida hispida)1 and reopening the comment period on that proposal. The Commission offers the following comments and recommendations. Background On 28 December 2012, NMFS published a final rule listing the Arctic ringed seal as threatened under the Endangered Species Act (ESA) (77 Fed. Reg. 76706) and requesting information on physical and biological features essential to the conservation of Arctic ringed seals and on economic consequences of designating critical habitat for this species. Section 3(5)(A) of the ESA defines “critical habitat” as: (i) the specific areas within the geographical area occupied by the species, at the time it is listed in accordance with section 4 of this Act, on which are found those physical or biological features (I) essential to the conservation of the species and (II) which may require special management considerations or protection; and (ii) specific areas outside the geographical area occupied by the species at the time it is listed in accordance with the provisions of section 4 of this Act, upon a determination by the Secretary that such areas are essential for the conservation of the species. -
Botanical Nomenclature: Concept, History of Botanical Nomenclature
Module – 15; Content writer: AvishekBhattacharjee Module 15: Botanical Nomenclature: Concept, history of botanical nomenclature (local and scientific) and its advantages, formation of code. Content writer: Dr.AvishekBhattacharjee, Central National Herbarium, Botanical Survey of India, P.O. – B. Garden, Howrah – 711 103. Module – 15; Content writer: AvishekBhattacharjee Botanical Nomenclature:Concept – A name is a handle by which a mental image is passed. Names are just labels we use to ensure we are understood when we communicate. Nomenclature is a mechanism for unambiguous communication about the elements of taxonomy. Botanical Nomenclature, i.e. naming of plants is that part of plant systematics dealing with application of scientific names to plants according to some set rules. It is related to, but distinct from taxonomy. A botanical name is a unique identifier to which information of a taxon can be attached, thus enabling the movement of data across languages, scientific disciplines, and electronic retrieval systems. A plant’s name permits ready summarization of information content of the taxon in a nested framework. A systemofnamingplantsforscientificcommunicationmustbe international inscope,andmustprovideconsistencyintheapplicationof names.Itmustalsobeacceptedbymost,ifnotall,membersofthe scientific community. These criteria led, almost inevitably, to International Botanical Congresses (IBCs) being the venue at which agreement on a system of scientific nomenclature for plants was sought. The IBCs led to publication of different ‘Codes’ which embodied the rules and regulations of botanical nomenclature and the decisions taken during these Congresses. Advantages ofBotanical Nomenclature: Though a common name may be much easier to remember, there are several good reasons to use botanical names for plant identification. Common names are not unique to a specific plant. -
Congolius, a New Genus of African Reed Frog Endemic to The
www.nature.com/scientificreports OPEN Congolius, a new genus of African reed frog endemic to the central Congo: A potential case of convergent evolution Tadeáš Nečas1,2*, Gabriel Badjedjea3, Michal Vopálenský4 & Václav Gvoždík1,5* The reed frog genus Hyperolius (Afrobatrachia, Hyperoliidae) is a speciose genus containing over 140 species of mostly small to medium-sized frogs distributed in sub-Saharan Africa. Its high level of colour polymorphism, together with in anurans relatively rare sexual dichromatism, make systematic studies more difcult. As a result, the knowledge of the diversity and taxonomy of this genus is still limited. Hyperolius robustus known only from a handful of localities in rain forests of the central Congo Basin is one of the least known species. Here, we have used molecular methods for the frst time to study the phylogenetic position of this taxon, accompanied by an analysis of phenotype based on external (morphometric) and internal (osteological) morphological characters. Our phylogenetic results undoubtedly placed H. robustus out of Hyperolius into a common clade with sympatric Cryptothylax and West African Morerella. To prevent the uncovered paraphyly, we place H. robustus into a new genus, Congolius. The review of all available data suggests that the new genus is endemic to the central Congolian lowland rain forests. The analysis of phenotype underlined morphological similarity of the new genus to some Hyperolius species. This uniformity of body shape (including cranial shape) indicates that the two genera have either retained ancestral morphology or evolved through convergent evolution under similar ecological pressures in the African rain forests. African reed frogs, Hyperoliidae Laurent, 1943, are presently encompassing almost 230 species in 17 genera. -
Major Lineages Within Apiaceae Subfamily Apioideae: a Comparison of Chloroplast Restriction Site and Dna Sequence Data1
American Journal of Botany 86(7): 1014±1026. 1999. MAJOR LINEAGES WITHIN APIACEAE SUBFAMILY APIOIDEAE: A COMPARISON OF CHLOROPLAST RESTRICTION SITE AND DNA SEQUENCE DATA1 GREGORY M. PLUNKETT2 AND STEPHEN R. DOWNIE Department of Plant Biology, University of Illinois, Urbana, Illinois 61801 Traditional sources of taxonomic characters in the large and taxonomically complex subfamily Apioideae (Apiaceae) have been confounding and no classi®cation system of the subfamily has been widely accepted. A restriction site analysis of the chloroplast genome from 78 representatives of Apioideae and related groups provided a data matrix of 990 variable characters (750 of which were potentially parsimony-informative). A comparison of these data to that of three recent DNA sequencing studies of Apioideae (based on ITS, rpoCl intron, and matK sequences) shows that the restriction site analysis provides 2.6± 3.6 times more variable characters for a comparable group of taxa. Moreover, levels of divergence appear to be well suited to studies at the subfamilial and tribal levels of Apiaceae. Cladistic and phenetic analyses of the restriction site data yielded trees that are visually congruent to those derived from the other recent molecular studies. On the basis of these comparisons, six lineages and one paraphyletic grade are provisionally recognized as informal groups. These groups can serve as the starting point for future, more intensive studies of the subfamily. Key words: Apiaceae; Apioideae; chloroplast genome; restriction site analysis; Umbelliferae. Apioideae are the largest and best-known subfamily of tem, and biochemical characters exhibit similarly con- Apiaceae (5 Umbelliferae) and include many familiar ed- founding parallelisms (e.g., Bell, 1971; Harborne, 1971; ible plants (e.g., carrot, parsnips, parsley, celery, fennel, Nielsen, 1971). -
Receptor-Like Kinases from Arabidopsis Form a Monophyletic Gene Family Related to Animal Receptor Kinases
Receptor-like kinases from Arabidopsis form a monophyletic gene family related to animal receptor kinases Shin-Han Shiu and Anthony B. Bleecker* Department of Botany and Laboratory of Genetics, University of Wisconsin, Madison, WI 53706 Edited by Elliot M. Meyerowitz, California Institute of Technology, Pasadena, CA, and approved July 6, 2001 (received for review March 22, 2001) Plant receptor-like kinases (RLKs) are proteins with a predicted tionary relationship between the RTKs and RLKs within the signal sequence, single transmembrane region, and cytoplasmic recognized superfamily of related eukaryotic serine͞threonine͞ kinase domain. Receptor-like kinases belong to a large gene family tyrosine protein kinases (ePKs). An earlier phylogenetic analysis with at least 610 members that represent nearly 2.5% of Arabi- (22), using the six RLK sequences available at the time, indicated dopsis protein coding genes. We have categorized members of this a close relationship between plant sequences and animal RTKs, family into subfamilies based on both the identity of the extracel- although RLKs were placed in the ‘‘other kinase’’ category. A more lular domains and the phylogenetic relationships between the recent analysis using only plant sequences led to the conclusion that kinase domains of subfamily members. Surprisingly, this structur- the 18 RLKs sampled seemed to form a separate family among the ally defined group of genes is monophyletic with respect to kinase various eukaryotic kinases (23). The recent completion of the domains when compared with the other eukaryotic kinase families. Arabidopsis genome sequence (5) provides an opportunity for a In an extended analysis, animal receptor kinases, Raf kinases, plant more comprehensive analysis of the relationships between these RLKs, and animal receptor tyrosine kinases form a well supported classes of receptor kinases. -
Pollen Morphology of Erythronium L. (Liliaceae) and Its Systematic Relationships
J. Basic. Appl. Sci. Res., 2(2)1833-1838, 2012 ISSN 2090-4304 Journal of Basic and Applied © 2012, TextRoad Publication Scientific Research www.textroad.com Pollen Morphology of Erythronium L. (Liliaceae) and its Systematic Relationships Sayed-Mohammad Masoumi Department of Plant Protection, Razi University, Kermanshah, Iran ABSTRACT Pollen morphology of three genus of Erythronium was studied by the Light Microscopy (LM), Scanning Electron Microscopy (SEM) and Transmission Electron Microscopy (TEM). Sulcus long reaching the ends of the grains, with operculum (E. giganteum, E. sibiricum) or without it (E. caucasicum). With surface latticed ornamentation and large lattice, thickness of muri and size of Lumina in E. sibiricum are widely varied. Also, most palynomorphological characteristics of the data transmission electron microscopy (TEM) showed no strong differences between E. caucasicum and E. sibiricum, , but these species are well distinguished from E. giganteum according to ectexine thickness (thickness of the tectum and the foot layer), shape and diameter of the caput, height and width of the columella. KEY WORDS: Caput; Columella; Exine ornamentation; intine; Microrelief; Pollen grain; Tectum. INTRODUCTION Takhtajan, 1987 indicated that the genus of Erythronium in Tribe Tulipeae is of the Liliaceae family. Different sources have considered the species number of this genus varied from 24-30. Baranova (1999) introduced 24 species for this genus, of which 20 species were spread in North America. Allen et al. (2003) examined the genus of Erythronium, Amana, and Tulipa using the DNA sequences from the chloroplast gene matK and the internal transcribed spacer (ITS) of nuclear ribosomal DNA. Palynomorphological characters of 20 different pollen species of Erythronium were evaluated by different researchers (Ikuse, 1965; Beug (1963); Radulescu, 1973; Nakamura, 1980; Schulze, 1980; Kuprianova, 1983; Takahashi (1987); Kosenko, 1991b, 1992, 1996, 1999; Maassoumi, 2005a, 2005b, 2007). -
(Sarracenia) Provide a 21St-Century Perspective on Infraspecific Ranks and Interspecific Hybrids: a Modest Proposal* for Appropriate Recognition and Usage
Systematic Botany (2014), 39(3) © Copyright 2014 by the American Society of Plant Taxonomists DOI 10.1600/036364414X681473 Date of publication 05/27/2014 Pitcher Plants (Sarracenia) Provide a 21st-Century Perspective on Infraspecific Ranks and Interspecific Hybrids: A Modest Proposal* for Appropriate Recognition and Usage Aaron M. Ellison,1,5 Charles C. Davis,2 Patrick J. Calie,3 and Robert F. C. Naczi4 1Harvard University, Harvard Forest, 324 North Main Street, Petersham, Massachusetts 01366, U. S. A. 2Harvard University Herbaria, Department of Organismic and Evolutionary Biology, 22 Divinity Avenue, Cambridge, Massachusetts 02138, U. S. A. 3Eastern Kentucky University, Department of Biological Sciences, 521 Lancaster Avenue, Richmond, Kentucky 40475, U. S. A. 4The New York Botanical Garden, 2900 Southern Boulevard, Bronx, New York 10458, U. S. A. 5Author for correspondence ([email protected]) Communicating Editor: Chuck Bell Abstract—The taxonomic use of infraspecific ranks (subspecies, variety, subvariety, form, and subform), and the formal recognition of interspecific hybrid taxa, is permitted by the International Code of Nomenclature for algae, fungi, and plants. However, considerable confusion regarding the biological and systematic merits is caused by current practice in the use of infraspecific ranks, which obscures the meaningful variability on which natural selection operates, and by the formal recognition of those interspecific hybrids that lack the potential for inter-lineage gene flow. These issues also may have pragmatic and legal consequences, especially regarding the legal delimitation and management of threatened and endangered species. A detailed comparison of three contemporary floras highlights the degree to which infraspecific and interspecific variation are treated inconsistently.