Authors: Pallavi Subhraveti Ron Caspi Quang Ong Peter D Karp An online version of this diagram is available at BioCyc.org. Biosynthetic pathways are positioned in the left of the cytoplasm, degradative pathways on the right, and reactions not assigned to any pathway are in the far right of the cytoplasm. Transporters and membrane are shown on the membrane. Ingrid Keseler Periplasmic (where appropriate) and extracellular reactions and proteins may also be shown. Pathways are colored according to their cellular function. Gcf_000204315Cyc: gamma proteobacterium IMCC3088 Cellular Overview Connections between pathways are omitted for legibility. Anamika Kothari

ammonium ammonium hydrogencarbonate

RS01670 RS06240 RS03760

ammonium ammonium hydrogencarbonate

Cofactor, , Electron Carrier, and , Prosthetic Group, Electron Carrier Degradation a 3-methyl- D-ribulose a 2'- a [] (2Z,4E)-2-amino- (2Z,4E)-2-amino- 1498 N 6 -dimethylallyladenosine 37 a sulfurated a (7Z)-hexadec- a (4Z)-hexadec- an N-modified an L-asparaginyl- a uracil ubiquinol-8 biosynthesis (prokaryotic) a malonyl-[acp] branched 2,3,4- a malonyl-[acp] 5-phosphate deoxyribonucleoside C-terminal Glu 5-methyl-muconate 6-oxohexa- met DMAPP pyridoxal 5'-phosphate biosynthesis I NAD thioredoxin pathway 6-hydroxymethyl-dihydropterin tetrapyrrole biosynthesis superpathway of biosynthesis menaquinol-7 biosynthesis di-trans,poly-cis-undecaprenyl vitamin B degradation in tRNA [ carrier] 7-enoyl-[acp] 4-enoyl-[acp] aminoacyl-[tRNA] [tRNA Asn ] in 16S rRNA 6 saturated 3,4-dihydroxy- 5'-diphosphate 16S rRNA all-trans- phosphorylation and from uroporphyrinogen-III phosphate biosynthesis L-valine degradation I Degradation succinate beta-ketoacyl-[acyl- long-chain-fatty- beta-ketoacyl-[acyl- aminoacyl-tRNA ribonucleotide- L-glutamate ribosomal protein S6 semialdehyde aminoacyl-tRNA 2,4-dienoate bifunctional 4-hydroxy- diphosphate biosynthesis I I (from glutamate) all-trans- Metabolic Regulator Biosynthesis 2-butanone-4- 2-hydroxymuconic 2-hydroxymuconic (uracil(1498)-N(3))- 4-hydroxybenzoate octaprenyl D-erythrose transhydrogenation an oxidized 2-carboxy-1,4- Macromolecule Modification protein S-nitrosylation and denitrosylation dehydrogenase, carrier-protein] acid--CoA : carrier-protein] : diphosphate modification protein: semialdehyde hydrolase: semialdehyde ornithine 3-methylbut- 4-phosphate uroporphyrinogen-III heptaprenyl (2E,6E)-farnesyl L-leucine degradation I pyridoxamine phosphate synthase: methyltransferase: diphosphate + IPP hydrophobic membrane synthase I: IMCC3088_RS11970 synthase II: IMCC3088_RS06635 reductase subunit beta: IMCC3088_RS13660 IMCC3088_RS06635 acetyltransferase/ 2-enyl 4-hydroxybenzoate NAD thioredoxin Glu naphthoquinol diphosphate diphosphate ppGpp biosynthesis IMCC3088_RS13260 dehydrogenase: dehydrogenase: IMCC3088_RS09280 erythrose 4- GTP di-trans,poly-cis- a [protein]- val anchor protein: IMCC3088_RS00415 [+ 15 isozymes] IMCC3088_RS05200 IMCC3088_RS00495 N-acetylglutamate diphosphate octaprenyltransferase: NAD(+) mannosylglycerate pyridoxine a 3-methyl- aminoacyl-tRNA ribosomal protein S6 IMCC3088_RS04110 aminoacyl-tRNA IMCC3088_RS04110 phosphate GTP cyclohydrolase glutamate-tRNA ligase: uroporphyrinogen decaprenylcistransferase: L- pyridoxamine-pyruvate IMCC3088_RS11580 [+ 3 isozymes] 3,4-dihydroxy- 16S rRNA synthase: argJ reductase: 3-octaprenyl-4-ubiA : ppnK demethylmenaquinol-7 biosynthesis I leu beta-ketoacyl synthase: branched a (6Z)-3- hydrolase: ribonucleotide- modification protein: 2-hydroxymuconic hydrolase: 2-hydroxymuconic dehydrogenase: I FolE: IMCC3088_RS03005 decarboxylase: hemE di-trans,octa-cisIMCC3088_RS00885 pppGpp branched chain amino aminotransferase: diphosphate AMP 2-butanone-4- (uracil(1498)-N(3))- ispH + thioredoxin- branched chain amino tRNA-2-methylthio-N(6)- IMCC3088_RS00975a (9Z)-3-oxo- 2,3,4-saturated acyl-carrier protein oxooctadec- IMCC3088_RS11140 diphosphate reductase a [protein] C-IMCC3088_RS12635 IMCC3088_RS11140 amino-acid N- (E)-4-hydroxy-3- hydroxybenzoate NADP an L-glutamyl- (p)ppGpp synthetase: relA α acid aminotransferase: an uncharged semialdehyde semialdehyde gapA IMCC3088_RS14110 bifunctional -undecaprenyl GDP- -D-mannose IMCC3088_RS05385 an N-modified phosphate synthase: Asn methyltransferase: disulfide reductase: [tRNA Glu ] guanosine-5'-triphosphate, acid aminotransferase: dimethylallyladenosine acyl-carrier protein octadec-9- fatty acyl-CoA 6-enoyl-[acp] subunit alpha: terminal α-L- dehydrogenase: tRNA asn dehydrogenase: acetyltransferase: methylbut-2-en- 3-polyprenyl-4- coproporphyrinogen III demethylmenaquinone diphosphate bifunctional (p)ppGpp IMCC3088_RS01185 amino acid tRNA IMCC3088_RS00960 IMCC3088_RS03230 4-phospho- NAD(P)(+) IMCC3088_RS04935 GTP 3'-diphosphate a [protein] 3- IMCC3088_RS01185 synthase MiaB: enoyl-[acp] IMCC3088_RS00500 glutamate-α- an N 3 - IMCC3088_RS01205 1-yl diphosphate hydroxybenzoate synthetase II/ guanosine- branched chain amino L-isoleucine degradation I 1-deoxy-L- IMCC3088_RS04180 IMCC3088_RS04180 D-erythronate cyclohydrolase glutamyl-tRNA methyltransferase/2- undecaprenyl- nitrosothio- a ribonucleoside (2Z,4E)-2-amino- (2Z,4E)-2- 1498 N α -acetyl-L- transhydrogenase: pyrophosphatase: α branched chain amino pyridoxal IMCC3088_RS112752-methylthio-N 6 - glycero-tetrulose formate L-glutamate methyluracil decarboxylase: 7,8- reductase: radical SAM protein: methoxy-6-polyprenyl- diphosphatase: 3',5'-bis 3'- guanosine 3'-diphosphate 2-O-( -D-mannosyl) acid aminotransferase: an unsulfurated diphosphate 5-methyl-muconate aminomuconate methionine erythronate- IMCC3088_RS02595 I FolE: folE IMCC3088_RS02910 L-alanine 37 in 16S rRNA IMCC3088_RS13435 dihydroneopterin pyrophosphohydrolase: -3-phosphoglycerate IMCC3088_RS03040 acid aminotransferase: met 5'-deoxyadenosine dimethylallyladenosine 4-phosphate 4-phosphate a reduced IMCC3088_RS11105 IMCC3088_RS08045 1,4-benzoquinol IMCC3088_RS02400 5'-triphosphate 3'- ile 3-oxoacyl-[acyl- [sulfur carrier] [+ 3 isozymes] 3'-triphosphate IMCC3088_RS12820 4-methyl-2- IMCC3088_RS03040 in tRNA 3-octaprenyl-4- dehydrogenase: thioredoxin (S)-4-amino-5- methylase: ubiE di-trans,octa-cis- diphosphatase: mannosyl-3- 3-methyl-2- branched chain amino carrier-protein] hydroxybenzoate protoporphyrinogen IX IMCC3088_RS12820 phosphoglycerate oxopentanoate IMCC3088_RS14065 NADPH oxopentanoate protoporphyrinogen IX undecaprenyl phosphate oxobutanoate acid aminotransferase: reductase: fabG carboxy-: menaquinol-7 : 4-methyl-2- 2-methoxy-6-all trans- 2 glutamate-1- a [protein]- 3-methyl-2- IMCC3088_RS01185 2-amino-6-[1-hydroxyethyl]- a (3Z)-dec- N - 4-bromodiphenyl (2R,3S)-3- (3R)-3-hydroxy-2-oxo-4 S-nitrosoglutathione 4-pyridoxolactone an octanoyl-[acp] heptaprenyl-2-methoxy- ADP-D-ribose DMKH2-13 oxaloacetate IPP IMCC3088_RS07505 7,8- semialdehyde IMCC3088_RS07775 L-cysteine oxobutanoate oxopentanoate 7-methyl-7,8-dihydropterin a malonyl-[acp] a palmitoleoyl-[acp] a malonyl-[acp] a lignoceroyl-[acp] an arachidoyl-[acp] succinylglutamate ether isopropylmalate phosphonooxybutanoate N 10 -formyl-tetrahydrofolate biosynthesis branched chain amino 2-amino-4-hydroxy-6- 3-enoyl-[acp] 1,4-benzoquinol ADP-ribose biphenyl 2,3- dihydroneopterin aminotransferase: 2-O-(α-D-mannosyl) dehydrogenase: dehydrogenase: beta-ketoacyl-[acyl- beta-ketoacyl-[acyl- beta-ketoacyl-[acyl- beta-ketoacyl-[acyl- bifunctional beta-ketoacyl-[acyl- succinylglutamate bifunctional 3-isopropylmalate oxaloacetate 4-hydroxy- 2-octaprenylphenol 3-phosphoserine/ GTP ppGpp S-(hydroxymethyl) acid aminotransferase: hydroxymethyldihydropteridine pyrophosphatase: : 3'-phosphate IMCC3088_RS03445 -D-glycerate IMCC3088_RS11560 IMCC3088_RS11555 carrier-protein] carrier-protein] carrier-protein] synthase carrier-protein] synthase demethylmenaquinone carrier-protein] desuccinylase: demethylmenaquinone dehydratase decarboxylase 3-methylbut- phosphohydroxythreonine acyl carrier protein IMCC3088_RS03040 pyrophosphokinase: IMCC3088_RS04800 IMCC3088_RS11175 2-octaprenylphenol a tetrahydrofolate bis(guanylyl molybdenum (S)-3-methyl-2- synthase I: synthase II: I: IMCC3088_RS00415 I: IMCC3088_RS00415 methyltransferase/2- synthase I: IMCC3088_RS13655 methyltransferase/2- large subunit: subunit beta: 2-enyl aminotransferase: protoporphyrin IX dehydrogenase: isovaleryl-CoA IMCC3088_RS08555 hydroxylase: 5-aminolevulinate cofactor) biosynthesis isobutanoyl-CoA oxopentanoate IMCC3088_RS00415 IMCC3088_RS05200 beta-ketoacyl synthase: beta-ketoacyl synthase: methoxy-6-polyprenyl- IMCC3088_RS00415 ADP-ribose succinylglutamate methoxy-6-polyprenyl- biphenyl 2,3- IMCC3088_RS05370 IMCC3088_RS13605 diphosphate IMCC3088_RS03135 an acyl- IMCC3088_RS07020 4-pyridoxate IMCC3088_RS07635 ferrochelatase: MoO - nucleoside- bifunctional (p)ppGpp isovaleryl-CoA 3-methyl-2- 2-amino-4-hydroxy-6- beta-ketoacyl synthase: [+ 3 isozymes] IMCC3088_RS00975 IMCC3088_RS00975 1,4-benzoquinol beta-ketoacyl synthase: pyrophosphatase: desuccinylase/ 1,4-benzoquinol dioxygenase: 3-isopropylmalate oxaloacetate reductase: 7,8- delta-aminolevulinic 2 carrier protein S-(hydroxymethyl) isobutyryl-CoA:FAD an (11Z)-3- 3-(all-trans 4-phospho- hemH molybdopterin diphosphate kinase: synthetase II/ guanosine- dehydrogenase: oxopentanoate hydroxymethyldihydropteridine IMCC3088_RS00975 methylase: ubiE IMCC3088_RS00975 nudF : methylase: ubiE IMCC3088_RS11420 dehydratase decarboxylase: ispH dihydroneopterin acid dehydratase: glutathione : a (5Z)-3- acyl-carrier protein oxooctadec- a 3-oxohexacosanoyl-[acp] a 3-oxodecanoyl-[acp] 6-methoxy-3-methyl-2- a 3- 4-bromo-2,3- (E)-4-hydroxy-3- -octaprenyl) hydroxy-L- methionine synthase: bis(molybdenumcofactor IMCC3088_RS10595 3',5'-bis pyrophosphate 3'- IMCC3088_RS01345 dehydrogenase: pyrophosphokinase: IMCC3088_RS11810 menaquinol-13 small subunit: IMCC3088_RS13610 IMCC3088_RS03450 dehydrogenase: IMCC3088_RS01345 acyl-carrier protein oxododec- 11-enoyl-[acp] all-trans-heptaprenyl- oxodocosanoyl- D-ribofuranose dihydrodiol- methylbut-2-en- benzene-1,2-diol 4-hydroxythreonine- IMCC3088_RS05085 dihydroneopterin ferroheme b cofactor) synthase: pyrophosphohydrolase: guanosine-3',5'- IMCC3088_RS11555 IMCC3088_RS03630 1,4-benzoquinol AMP diphenyl ether IMCC3088_RS05365 pyruvate 1-yl diphosphate [acyl-carrier-protein] IMCC3088_RS09135 3-methylcrotonyl- 5-formyl-3-hydroxy-2- [1-(2-amino-7-methyl-4-oxo- 5-enoyl-[acp] [acp] 5-phosphate succinate Glu (2S)-2- bifunctional 3- 4-phosphate aldolase: folB porphobilinogen bis(molybdenumIMCC3088_RS02410 holo-ACP synthase: IMCC3088_RS12820 bis(diphosphate) methylacrylyl-CoA CoA 7,8-dihydro-3H-pteridin- : S-(hydroxysulfenamide) 2-methylbutanoyl-CoA methylpyidine-4-carboxylate isopropylmalate demethylubiquinone 3- dehydrogenase PdxA: 6-(hydroxymethyl) cofactor) IMCC3088_RS02455 3'-diphosphatase: 6-yl)]ethyl diphosphate O-methyltransferase/2- IMCC3088_RS03605 hydroxymethylbilane IMCC3088_RS07140 IMCC3088_RS12820 -glutathione enoyl-CoA hydratase: 3-methylcrotonyl- -7,8-dihydropterin molybdenum cofactor CoA carboxylase S-2-methylbutryl- octaprenyl-6-hydroxy D-glyceraldehyde (2S)-2-amino-3-oxo-4- dihydrofolate synthase: IMCC3088_RS00065 pyruvate 2-amino-4-hydroxy-6- : GDP subunit alpha: CoA:FAD phenol methylase: 3-phosphate IMCC3088_RS13415 undecaprenyl-diphospho- a pseudouridine 1915 2-methoxy-6-all trans- a negatively (S)-1-pyrroline- CTP phosphonooxybutanoate reductase: hydroxymethyldihydropteridine IMCC3088_RS02410 (S)-3-hydroxy- IMCC3088_RS03390 oxidoreductase: 3-hydroxy-2-methylpyridine- a (5Z)-tetradec- phytenate DMKH2-10 IMCC3088_RS03150 IMCC3088_RS07590 N-acetylmuramoyl-L- UDP-N-acetyl- a malonyl-[acp] a myristoyl-[acp] in 23S rRNA hexaprenyl-2-methoxy- a stearoyl-[acp] a butanoyl-[acp] supercoiled DNA 5-carboxylate ATP 1-deoxy-D-xylulose-5- pyrophosphokinase: preuroporphyrinogen bis(guanylyl acyl-carrier protein isobutanoyl-CoA IMCC3088_RS01345 4,5-dicarboxylate γ α 5-enoyl-[acp] dGDP deoxycytidine 2-methoxy- serine hydroxylamine 3-methylglutaconyl- alanyl- -D-glutamyl-L- -D-glucosamine beta-ketoacyl-[acyl- long-chain-fatty- beta-ketoacyl-[acyl- 23S rRNA 1,4-benzoquinol beta-ketoacyl-[acyl- beta-ketoacyl-[acyl- bifunctional DNA topoisomerase bifunctional proline phosphate synthase: glycine cleavage system IMCC3088_RS08555 molybdopterin 3-hydroxyisobutyryl- (E)-2- undecaprenyldiphospho- bifunctional ribonucleotide-diphosphate triphosphate 6-(all-trans- hydroxymethyltransferase: glyA uroporphyrinogen CoA lysyl- D-alanyl-D-alanine carrier-protein] acid--CoA ligase: carrier-protein] synthase (pseudouridine(1915)- demethylmenaquinone carrier-protein] carrier-protein] demethylmenaquinone IV subunit A: dehydrogenase/L- bifunctional biotin- IMCC3088_RS05705 3-amino-1- a 7,8-dihydrofolate aminomethyltransferasea 5-methyltetrahydrofolate cofactor) CoA hydrolase: methylcrotonoyl-CoA muramoylpentapeptide beta-N- reductase subunit beta: deaminase: octaprenyl)phenol serine 2-amino-4-hydroxy-6- III synthase: methylglutaconyl- synthase I: IMCC3088_RS05520 I: IMCC3088_RS00415 N(3))-methyltransferase methyltransferase/2- synthase I: synthase I: methyltransferase/2- IMCC3088_RS09225 glutamate gamma- -[acetyl-CoA- 1-deoxy-D-xylulose hydroxyacetone T: gcvT tRNA processing IMCC3088_RS12050 acetylglucosaminyltransferase: IMCC3088_RS00495 IMCC3088_RS01340 2-octaprenyl-6- hydroxymethyltransferase: glyA hydroxymethyldihydropteridine IMCC3088_RS13420 CoA hydratase: enoyl-CoA hydratase: 3-hydroxy-2-methylpyridine- IMCC3088_RS00415 [+ 15 isozymes] beta-ketoacyl synthase: RlmH: methoxy-6-polyprenyl- IMCC3088_RS00415 IMCC3088_RS00415 methoxy-6-polyprenyl- DNA topoisomerase semialdehyde carboxylase] methoxyphenol 5-phosphate 1-phosphate pyrophosphokinase: (S)-3-hydroxy- ditrans,octacisIMCC3088_RS06065- IMCC3088_RS00535 ribonucleotide-diphosphate dehydrogenase: deoxycytidine IMCC3088_RS03385 IMCC3088_RS00065 5-carboxylate IMCC3088_RS00975 3 1,4-benzoquinol 1,4-benzoquinol IV subunit B: synthetase/biotin thiamine diphosphate undecaprenyldiphospho-N- beta-ketoacyl synthase: diphosphate AMP phytenoyl-CoA an N - beta-ketoacyl synthase: beta-ketoacyl synthase: triphosphate hydroxylase: IMCC3088_RS03630 uroporphyrinogen-III transformations I a polycistronic ammonium isobutanoate 1915 reductase subunit alpha: methylase: ubiE IMCC3088_RS01135 IMCC3088_RS06605 operon repressor: thymidylate synthase: biosynthesis I (E. coli) (2S,3S)-3-hydroxy-2- acetyl-(N-acetylglucosaminyl) IMCC3088_RS00975a (7Z)-3-oxo- a 3-oxohexadecanoyl-[acp] methylpseudouridine 6-methoxy-3-methyl-2-methylase: ubiE IMCC3088_RS00975 IMCC3088_RS00975 IMCC3088_RS07635 pyridoxine 5'- (7,8-dihydropterin- Aminoacyl-tRNA Charging tRNA precursor 3-hydroxyisobutyrate HMG-CoA UDP a 3-oxoicosanoyl- a 3-oxohexanoyl- IMCC3088_RS00500 IMCC3088_RS03965 deaminase: dcd IMCC3088_RS07595 methylbutanoyl-CoA muramoyl-L-alanyl- acyl-carrier protein hexadec-7- in 23S rRNA all-trans-hexaprenyl- menaquinol-10 a relaxed DNA Glu biotinyl-5'- 2-methoxy-6-all phosphate synthase: bifunctional 6-yl)methyl 2-[(2R,5Z)-2-carboxy- dehydrogenase: [acp] [acp] GDP UTP trans-octaprenyl- IMCC3088_RS03210 a tetrahydrofolate HMP-PP 4-methylthiazol-5(2H)- hydroxymethylglutaryl- 3-hydroxy-2- γ-D-glutamyl-L-lysyl- enoyl-[acp] 1,4-benzoquinol adenylate 5,10-methylene- diphosphate tRNA charging E: IMCC3088_RS12045 2-(acetamidomethylene) gln CoA lyase: methylbutyryl-CoA D-alanyl-D-alanine 2-methoxy-1,4- tetrahydrofolate formate:tetrahydropteroylpolyglutamate ylidene]ethyl phosphate glutaminyl-tRNA succinate a (6S)-5- IMCC3088_RS05245 : (S)-methylmalonate- IMCC3088_RS06755 dehydrogenase: benzoquinol dehydrogenase/ ligase: IMCC3088_RS12385 arginine- biosynthesis via bifunctional pyridoxine 5'-phosphate formyltetrahydrofolate thiamine phosphate IMCC3088_RS05245 semialdehyde hydroxymethylglutaryl- IMCC3088_RS02705 methylenetetrahydrofolate 5,10-methylene- -tRNA transamidation a tRNA precursor 2-methoxy-6-all trans- 6-methoxy-2-all- a (7Z)-3-oxo- demethylmenaquinone 5-formyltetrahydrofolate arg a single a [DNA]-3'- a 5'-phospho- + dCTP reductase [NAD(P)H]: ligase: with a 5' II: CoA lyase: a (3Z)-dodec- a malonyl-[acp] linoleate a behenoyl-[acp] NAD decaprenyl-2-methoxy- trans-octaprenyl- a decanoyl-[acp] DMKH2-11 hexadec-7- coniferaldehyde isoquinoline methyltransferase/2- pyridoxamine 5'- tetrahydrofolate cyclo-ligase: formyltetrahydrofolate thiamine- Glu methylmalonate- 2-methylacetoacetyl-CoA stranded DNA 3-enoyl-[acp] hydroxyl [DNA] dADP deoxycytidine IMCC3088_RS09275 argS an L-arginyl- extension and IMCC3088_RS06975 IMCC3088_RS10415 long-chain-fatty- DNA 1,4-benzoquinol 1,4-benzoquinone enoyl-[acp] coniferyl- isoquinoline 1- phosphate oxidase: cyclohydrolase: deformylase: phosphate kinase: Gln a tRNA precursor semialdehyde succinate semialdehyde beta-ketoacyl-[acyl- beta-ketoacyl-[acyl- beta-ketoacyl-[acyl- bifunctional 3-oxoacyl-ACP methoxy-6-polyprenyl- IMCC3088_RS07410 10 glutamyl-tRNA bifunctional bifunctional triphosphate an N - [tRNA Arg ] a long 3' trailer VII small subunit: acid--CoA ligase: ligase ribonucleotide-diphosphate dehydrogenase: oxidoreductase: 1,4-benzoquinol IMCC3088_RS06915 IMCC3088_RS12385 IMCC3088_RS08670 IMCC3088_RS13245 with a 5' dehydrogenase acetoacetate acetyl-CoA carrier-protein] carrier-protein] synthase demethylmenaquinone demethylmenaquinone carrier-protein] demethylmenaquinone reductase: a 5,10- a 5,10- formyltetrahydrofolate a tRNA Arg synthetase: (S)-3-amino-2- reductase subunit beta: deaminase: extension and a (acylating): acetyltransferase: IMCC3088_RS05700 synthase I: IMCC3088_RS11970 I: IMCC3088_RS00415 (NAD(+)) methyltransferase/2- methyltransferase/2- synthase I: methyltransferase/2- IMCC3088_RS05005 IMCC3088_RS14025 IMCC3088_RS07990 methylase: ubiE methylenetetrahydrofolate methenyltetrahydrofolate IMCC3088_RS03005 methylpropanoate IMCC3088_RS00495 IMCC3088_RS01340 6-methoxy-3- PLP thiamine diphosphate an L-glutamyl- short 3' extension IMCC3088_RS12065 IMCC3088_RS06510 exodeoxyribonuclease IMCC3088_RS00415 [+ 15 isozymes] beta-ketoacyl synthase: LigA: ligA methoxy-6-polyprenyl- methoxy-6-polyprenyl- IMCC3088_RS00415 methoxy-6-polyprenyl- [+ 10 isozymes] coniferyl-aldehyde isoquinoline 1- glycine cleavage system Gln exoribonuclease II: a (3R,7Z)-3- deoxycytidine methyl-2-all- bifunctional bifunctional [tRNA ] ribonuclease D: [+ 8 isozymes] VII large subunit: IMCC3088_RS00975 1,4-benzoquinol 1,4-benzoquinol ribonucleotide-diphosphate 1,4-benzoquinol dehydrogenase: oxidoreductase: aminomethyltransferase IMCC3088_RS06975 Polymeric Compound beta-ketoacyl synthase: AMP diphosphate linoleoyl-CoA NMN AMP [DNA] beta-ketoacyl synthase: hydroxy-hexadec- triphosphate trans-octaprenyl- NAD biosynthesis I (from aspartate) 5,10-methylene- 5,10-methylene- bifunctional asparaginyl/glutamyl- IMCC3088_RS13040 ribonuclease protein component: IMCC3088_RS10185 methylase: ubiE methylase: ubiE reductase subunit alpha: methylase: ubiE IMCC3088_RS10920 IMCC3088_RS08385 T: gcvT hydrogencarbonate propanoyl-CoA acetyl-CoA Degradation IMCC3088_RS00975a (5Z)-3-oxo- a 3-oxotetracosanoyl-[acp] 6-methoxy-3-methyl- 3-methyl-6-methoxy- a 3- IMCC3088_RS00975 7-enoyl-[acp] isoquinolin- deaminase: dcd 1,4-benzoquinol tetrahydrofolate methionine synthase: tetrahydrofolate 5,10-methylene- tRNA amidotransferase ribonuclease D: PH: rph IMCC3088_RS04650 a single-stranded a ribonucleoside IMCC3088_RS00500 menaquinol-11 ferulate phosphopantothenate biosynthesis I cys acyl-carrier protein tetradec-5- 2-all-trans-decaprenyl- 2-octaprenyl-1,4- oxododecanoyl- 2(1H)-one 2-octaprenyl-3- dehydrogenase/ IMCC3088_RS05085 dehydrogenase/ tetrahydrofolate cysteine--tRNA ligase: subunit C: IMCC3088_RS13040 a tRNA precursor L-tyrosine degradation I L-proline degradation oligodeoxyribonucleotide 5'-monophosphate ADP dUTP asp 5,10-methylene- pectin degradation III enoyl-[acp] 1,4-benzoquinol benzoquinone [acp] methyl-6-methoxy- 5,10-methylene- dehydrogenase/ a (6S)-5- IMCC3088_RS12390 an L-cysteinyl- IMCC3088_RS10740 with a short 3-methyl-2- tetrahydrofolate 5,10-methylene- 1,4-benzoquinone L-aspartate oxidase: tetrahydrofolate formyltetrahydrofolate [tRNA Cys ] 3' extension oxobutanoate cyclohydrolase: [+ 2 isozymes] a tRNA tyr pro a pectin hydroxylase: IMCC3088_RS02510 cyclohydrolase: tetrahydrofolate a tRNA Cys an L-glutaminyl- precursor with L-alanine putative a (2R)-2-hydroxy an odd numbered α ω 2-methoxy-6-all trans- 3-(all-trans- a (3R,5Z)-3- IMCC3088_RS07630 2-iminosuccinate 3-methyl-2-oxobutanoate IMCC3088_RS12385 cyclohydrolase: 5-formyltetrahydrofolate L-methionine degradation aromatic amino acid bifunctional proline , -9Z- an L-cysteinyl- IMCC3088_RS12385 Gln a 5' extension ribonuclease ribonuclease D: degradation IV succinyl-CoA acetoacetate DMK-12 15-cis-phytoene DMKH hydroxymethyltransferase: 10 [tRNA ] I (to L-homocysteine) aminotransferase: dehydrogenase/L- precursor: even numbered straight chain octadecenedioate a dodecanoyl-[acp] nonaprenyl-2-methoxy- nonaprenyl) a hexanoyl-[acp] Cys hydroxy-tetradec- 2 an N - IMCC3088_RS12385 cyclo-ligase: PH: rph IMCC3088_RS13040 [tRNA ] AMP ala RS03280 ala 3-demethylubiquinol-8 quinolinate synthetase: panB serine IMCC3088_RS11245 glutamate gamma- IMCC3088_RS14435 straight chain 2,3,4- 2,3,4-saturated long-chain-fatty- beta-ketoacyl-[acyl- acyl CoA--/ 1,4-benzoquinol benzene-1,2-diol beta-ketoacyl-[acyl- aminoacyl-tRNA bifunctional 5-enoyl-[acp]3-oxoacyl-ACP phytoene bifunctional formyltetrahydrofolate IMCC3088_RS07410 ribonuclease: long-chain-fatty- long-chain-fatty- bifunctional bifunctional 3- IMCC3088_RS07815 hydroxymethyltransferase: glyA 4-hydroxyphenylpyruvate ala semialdehyde Putative pectinesterase: saturated fatty acid fatty acid acid--CoA ligase: carrier-protein] synthase 3-ketoacid CoA carrier-protein] hydrolase: demethylmenaquinone reductase: dehydrogenase: demethylmenaquinone 3-demethylubiquinone-8 2-dehydropantoate bifunctional IMCC3088_RS04650 met acid--CoA ligase: acid--CoA ligase: demethylmenaquinone demethylubiquinone 3- 5'-: serine methionine alanine dehydrogenase: IMCC3088_RS01950 IMCC3088_RS05520 I: IMCC3088_RS00415 synthase I: IMCC3088_RS06635 methyltransferase/2- IMCC3088_RS05005 IMCC3088_RS03955 methyltransferase/2- 3-O-methyltransferase: 5,10-methylene- a 5,10- gln IMCC3088_RS11970 IMCC3088_RS11970 methyltransferase/2- O-methyltransferase/2- IMCC3088_RS04825 quinolinate hydroxymethyltransferase: glyA adenosyltransferase: dehydrogenase: IMCC3088_RS06605 a pectate [+ 15 isozymes] subunit beta: IMCC3088_RS00415 methoxy-6-polyprenyl- phytoene methoxy-6-polyprenyl- urea RS00190 urea 2-dehydropantoate tetrahydrofolate methenyltetrahydrofolate queuosine biosynthesis (S)-1-pyrroline- a (R)-2-hydroxy even an odd numbered ω beta-ketoacyl synthase: methoxy-6-polyprenyl- octaprenyl-6-hydroxy aminoacyl-tRNA a (5Z)-3-oxo-[+ 10 isozymes] IMCC3088_RS03150 an L-glutaminyl- IMCC3088_RS01770 [+ 15 isozymes] [+ 15 isozymes] -carboxy- IMCC3088_RS11405 1,4-benzoquinol dehydrogenase: 1,4-benzoquinol 2-reductase: dehydrogenase/ IMCC3088_RS09265 5-carboxylate galacturan 1,4-α- numbered straight straight chain IMCC3088_RS00975 1,4-benzoquinol phenol methylase: beta-ketoacyl synthase: hydrolase: tetradec-5- nicotinate- NAD biosynthesis from 2- siroheme biosynthesis Gln pyruvate diphosphate AMP diphosphate AMP AMP diphosphate (9Z)-octadec- methylase: ubiE methylase: ubiE ubiquinol-8 IMCC3088_RS06195 5,10-methylene- [tRNA ] an uncharged SAM chain 2,3,4-saturated 2,3,4-saturated a 3-oxotetradecanoyl-[acp] acetoacetyl-CoA succinate 6-methoxy-3-methyl-2-methylase: ubiE 2-methoxy- IMCC3088_RS03150 IMCC3088_RS00975 IMCC3088_RS11140 enoyl-[acp] IMCC3088_RS11185 adenosine diphosphorylase amino-3-carboxymuconate a 5,10- a tRNA Gln NADH repair preQ homogentisate galacturonidase: 9-enoyl-CoA 9,15,9'-tri-cis thr thr a 5-methyltetrahydrofolate tetrahydrofolate 0 a 3-oxooctanoyl- Cys menaquinol-12 MQH (carboxylating): β-alanine semialdehyde tRNA 7-cyano-7- IMCC3088_RS01890 fatty acyl CoA fatty acyl CoA all-trans-nonaprenyl- 6-(all-trans- a tRNA cys -ζ-carotene 2 RS10525 (R)-pantoate uroporphyrinogen-III methylenetetrahydrofolate cyclohydrolase: [acp] serine serine tetrahydrofolate biosynthesis IMCC3088_RS06170 aminocarboxymuconate lipoate biosynthesis deazaguanine 1,4-benzoquinol nonaprenyl)phenol IMCC3088_RS12385 NADH D-galactopyranuronate semialdehyde siroheme synthase: methylenetetrahydrofolate and incorporation I reductase: L-glutamate-5- (7,8-dihydropterin- NaMN pantoate--beta- IMCC3088_RS04960 reductase [NAD(P)H]: IMCC3088_RS14180 semialdehyde 4-aminobenzoate 6-yl)methyl 4-maleyl- 1-stearoyl- a 2-methoxy-6-all- 3-(all-trans a 3- 2445 a [ribosomal alanine ligase: precorrin-1 IMCC3088_RS09275 preQ SAH 2-oxoglutarate a proteinogenic decanoate succinyl-CoA a 3-oxo acid a guanine (R)-NADPHX predicted an octanoyl-[acp] Glu 1 acetoacetate bifunctional proline leukotriene-C4 trans-polyprenyl- -decaprenyl) a malonyl-[acp] oxodocosanoyl- protein L3]- dihydropteroatediphosphate nicotinate-nicotinamide IMCC3088_RS08570 quinolinate glutamate-tRNA ligase: amino acid a palmitoyl-[acp] sn-glycerol in 23S rRNA ATP an mRNA GMP ABC efflux dehydrogenase/L- aldehydo-D- 2-oxoglutarate long-chain-fatty- acyl CoA--acetate/ 1,4-benzoquinol benzene-1,2-diol [acp] 23S rRNA L-glutamine a heme synthase: nucleotide S-adenosyl-L- folate polyglutamylation octanoyltransferase: IMCC3088_RS03005 an L-glutamyl- gamma- 1-acyl-sn-glycerol-3-phosphate bifunctional bifunctional 3- beta-ketoacyl-[acyl- 3-oxoacyl-ACP bifunctional ADP- ribosomal protein transporter tRNA-guanine(34) adenosylhomocysteinase: glutamate gamma- galacturonate ferredoxin acid--CoA ligase: 3-ketoacid CoA (guanine(2445)-N(2)) polynucleotide IMCC3088_RS05320 adenylyltransferase: nicotinate-nucleotide methionine:precorrin-1 IMCC3088_RS00570 Glu glutamyltransferase: ggt 3-phosphate demethylmenaquinone demethylubiquinone 3- carrier-protein] reductase: dependent (S)- L3 N(5)-glutamine of heme 7,8- a [lipoyl-carrier [tRNA ] (R)-NADHX transglycosylase: tgt IMCC3088_RS09270 oxidoreductase IMCC3088_RS11970 5'-nucleotidase: IMCC3088_RS00525 (R)-pantothenate diphosphorylase 6 glu semialdehyde uronate : transferase IMCC3088_RS04060 /(guanine(2069)-N(7) adenylyltransferase NAD(P)H-hydrate dihydropteroate C-methyltransferase: a tetrahydrofolate protein] N - a tRNA bifunctional ADP- a 7-aminomethyl-7- 4-fumaryl- gamma- acyltransferase: methyltransferase/2- O-methyltransferase/2- synthase I: methyltransferase: glutathione- (carboxylating): dehydrogenase: IMCC3088_RS01955 subunit beta: [+ 15 isozymes] subunit beta: )- methyltransferase: PcnB: dehydratase/NAD(P) IMCC3088_RS04825 nicotinate adenine IMCC3088_RS04960 octanoyl-L-lysine 34 glutamyltransferase: IMCC3088_RS054051-stearoyl- methoxy-6-polyprenyl- octaprenyl-6-hydroxy IMCC3088_RS00415 a (3R)-3-[+ 12 isozymes] a [ribosomalIMCC3088_RS14105 a heme RS09870 a heme glutaredoxin dihydrofolate synthase/ : IMCC3088_RS06170 dependent (S)- deazaguanosine L-homocysteine acetoacetate IMCC3088_RS06605 IMCC3088_RS10035 IMCC3088_RS11405 IMCC3088_RS05380 IMCC3088_RS08550 H-hydrate epimerase: dinucleotide a reduced IMCC3088_RS10140an α-(γ-L- 2-palmitoyl- 1,4-benzoquinol phenol methylase: beta-ketoacyl synthase: hydroxydocosanoyl- an N 2 - protein L3]- reactions folylpolyglutamate IMCC3088_RS03925 precorrin-2 lipoyl synthase: NAD(P)H-hydrate in tRNA fumarylacetoacetate D-tagaturonate diphosphate AMP decanoyl-CoA acyl-carrier protein a 2,3,4-saturated an mRNA IMCC3088_RS06395 guanosine dihydrofolate synthase/ serine formate:tetrahydropteroylpolyglutamate H + ferredoxin [- CO succinyl-CoA succinate a 6-methoxy-3-methyl-methylase: ubiE 2-methoxy- IMCC3088_RS03150 IMCC3088_RS00975 [acp] methylguanine 2445 N 5 -methyl- synthase: NAD+ synthase: NAD+ synthase: NaMN IMCC3088_RS01655 dehydratase/NAD(P) S-adenosylmethionine:tRNA hydrolase: 2 leukotriene-D4 glutamyl)-L- sn-glycerol 3-oxoacyl-CoA a 3- (R)-4'- folylpolyglutamate hydroxymethyltransferase: glyA ligase: IMCC3088_RS12385 Glu (S)-NADPHX glutathione IMCC3088_RS05320 IMCC3088_RS05920 IMCC3088_RS05920 a [lipoyl-carrier isoleucine- H-hydrate epimerase: ribosyltransferase-isomerase: IMCC3088_RS00095 sulfur] cluster amino acid 3-phosphate 2-all-trans-polyprenyl- 6-(all-trans- oxodocosanoyl- in 23S rRNA L-glutamine phosphopantothenate siroheme synthase: synthase: ile a heme RS09860 a heme nicotinate-nicotinamide serine protein]-N 6 - IMCC3088_RS06395 IMCC3088_RS02350 1,4-benzoquinol decaprenyl)phenol [acp] 7,8-dihydrofolate IMCC3088_RS04960 10 -tRNA (S)-NADHX [+ 3 isozymes] NAD + nucleotide IMCC3088_RS05320 hydroxymethyltransferase: glyA an N - monoglutamate lipoyl-L-lysine ligase: ileS an L-isoleucyl- an epoxyqueuosine 34 L-tryptophan degradation glycine cleavage glutathione- adenylyltransferase: formyltetrahydrofolate ATP-dependent NADH- fumarate acetoacetate D-fructuronate sirohydrochlorin Ile in tRNA I (via anthranilate) 2+ 2+ thiamine diphosphate [tRNA ] a 2-methyl 1-stearoyl- a (7Z,10Z,13Z,16Z 3-(all-trans-heptaprenyl) adenine 1518 / a 3-(all-trans a 3- a (9Z)-3-oxo- a 1-acyl-sn Cd Cd disulfide reductase: IMCC3088_RS00525 a 5,10- dihydrofolate synthase/ Ile hydrate dehydratase: a tetrahydrofolate a tRNA a [glycine-cleavage complex 16-hydroxypalmitate octanoate L-cysteate 2+ 2+ biosynthesis II (Bacillus) epoxyqueuosine branched 2,3,4- a stearoyl-[acp] sn-glycerol ,19Z)-3-oxodocosa- benzene-1,2-diol adenine 1519 in 16S rRNA -polyprenyl) oxodocosanoyl- phe octadec-9- -glycerol 3- Zn RS11010 Zn IMCC3088_RS12025 NAD phosphorylation and dephosphorylation nicotinate adenine siroheme synthase: methylenetetrahydrofolate folylpolyglutamate IMCC3088_RS06395 H protein] N 6 -lipoyl-L-lysine glycine cleavage system IMP 2-(2-carboxy-4- reductase: trp long-chain-fatty- saturated fattylong-chain-fatty- acid long-chain-fatty- 3-phosphate 7,10,13,16,19-pentaenoyl-[acp]3-oxoacyl-ACP bifunctional 3- 16S rRNA benzene-1,2-diol [acp] 3-oxoacyl-ACP enoyl-[acp]3-oxoacyl-ACP aspartate phosphate1-acyl-sn-glycerol- Co 2+ Co 2+ dinucleotide IMCC3088_RS04960 dihydrofolate synthase/ synthase: thiamine salvage I aminomethyltransferase 1-acyl-sn-glycerol- bifunctional 3- aspartate a 7,8-dihydrofolate HMP-PP methylthiazol-5- NADH IMCC3088_RS06400 glycine cleavage system acid--CoA ligase: acid--CoA ligase: acid--CoA ligase: reductase: demethylubiquinone 3- (adenine(1518)-N(6)/ reductase: reductase: aminotransferase 3-phosphate + folylpolyglutamate IMCC3088_RS05320 T: gcvT 3-phosphate demethylubiquinone 3- aminotransferase NAD 34 aminomethyltransferase Degradation/ IMCC3088_RS11970 IMCC3088_RS11970 5'-nucleotidase: NAD+ synthase: 10 yl)ethyl phosphate a queuosine L-serine degradation IMCC3088_RS11970 IMCC3088_RS04060 O-methyltransferase/2- adenine(1519)-N(6))- IMCC3088_RS04060 IMCC3088_RS05005 family protein: acyltransferase: GSSG siroheme synthase: an N - acyltransferase: O-methyltransferase/2- family protein: 2+ 2+ dihydrofolate IMCC3088_RS05920 T: gcvT glycine dehydrogenase Utilization/ [+ 15 isozymes] [+ 15 isozymes] octaprenyl-6-hydroxy dimethyltransferase: IMCC3088_RS00220 IMCC3088_RS04825 Co RS04780 Co glutathione biosynthesis IMCC3088_RS05320 formyltetrahydrofolate thiamine thiamine leucine- in tRNA N-formylkynurenine [+ 15 isozymes] IMCC3088_RS05405 a (3R,7Z,10Z,13[+Z,16 12Z isozymes] octaprenyl-6-hydroxy a (3R)-3-[+ 12 isozymes] IMCC3088_RS00220 a (3R,9Z)-3-[+ 10 isozymes] a 1-acyl-2-IMCC3088_RS05405 reductase: leu dihydrolipoyl (aminomethyl- Assimilation - Other a 2-methyl 1-stearoyl-2- phenol methylase: IMCC3088_RS03610 phosphate -tRNA 16-hydroxypalmitoyl- N 6 -dimethyladenine 1518 phenol methylase: [+ 2 isozymes] palmitoyl-sn IMCC3088_RS07590 NAD + a 5,10- transferring): AMP diphosphate branched diphosphate AMP octanoyl-CoA stearoyl-sn ,19Z)-3-hydroxydocosa- hydroxydocosanoyl- [+ 3 isozymes] hydroxy-octadec- NAD(P)(+) ligase: leuS kynurenine ser dehydrogenase: acrylonitrile AMP diphosphate acyl-carrier protein IMCC3088_RS03150 6 1519 IMCC3088_RS03150 2-oxo-3- 3-sulfopyruvate inosine : NAD(+) methylenetetrahydrofolate thiamine- an L-leucyl- IMCC3088_RS02900 CoA 2,3,4-saturated -glycerol 3- 7,10,13,16,19-pentaenoyl-[acp] 2-methoxy-6-(all-trans /N -dimethyladenine a 2-methoxy- [acp] 9-enoyl-[acp] -glycerol 3- transhydrogenase: cys Glu thiamine Leu formamidase: serine/threonine IMCC3088_RS11555 a [glycine-cleavage degradation I phenylpropanoate a tetrahydrofolate IMCC3088_RS06325 kinase: phosphate kinase: [tRNA ] a [glycine-cleavage fatty acyl-CoA phosphate -heptaprenyl)phenol in 16S rRNA 6-(all-trans- phosphate [DNA] RS04725 [DNA] IMCC3088_RS02595 octaprenyl diphosphate glutamate-- phosphate a tRNA Leu N 6 -L-threonylcarbamoyladenosine 37 IMCC3088_RS10995 dehydratase: complex H protein] N 6 - guanylyl molybdenum [+ 3 isozymes] ppnK IMCC3088_RS13245 complex H protein] N 6 polyprenyl)phenol [+ 3 isozymes] biosynthesis cysteine ligase: thiamine- -modified tRNA biosynthesis 2-aminoprop-IMCC3088_RS01220 aminomethyldihydrolipoyl- acrylonitrile cofactor biosynthesis menaquinol-9 biosynthesis salvage from cobalamin thiamine L-kynurenine -dihydrolipoyl-L-lysine γ IMCC3088_RS12245 phosphate kinase: 2-enoate L-lysine MoO - menaquinol-8 biosynthesis (2E,6E)-farnesyl -L-glutamyl- menaquinol-6 biosynthesis diphosphate an L-1- an N-acylated 4-(cytidine 5'- a (7Z)-3- a [lipoyl-carrier choline RS10315 choline 2 IPP IMCC3088_RS13245 thr a proteinogenic dCDP a [glutamine- molybdopterin diphosphate L-cysteine cob(I)alamin 18-hydroxystearate 1-palmitoylglycerol an isocitrate acetyl-CoA 6 demethylmenaquinol-9 + octaprenyl- glutathione a palmitoyl-[acp] a prolipoprotein phosphatidyl- aliphatic-L- diphospho)-2-C- oxohexacos- protein]-N -[(R) thr RS02245 thr NADP cob(I)alamin thiamine threonylcarbamoyl- kynureninase: acrylamide amino acid 3-phosphate ribonucleotide-diphosphate synthetase]- ATP dehydrogenase XMP dIDP cofactor molybdenum cofactor bifunctional diphosphate synthase: glutathione synthase: val IMCC3088_RS06520 L-aspartate long-chain-fatty- gamma- 1-acyl-sn-glycerol- prolipoproteinsn-glycerol amino acidaminoacylase: methyl-D-erythritol4-(cytidine 5'- bifunctional isocitrate acetyl-CoA carboxylase 7-enoyl-[acp]3-oxoacyl-ACP -dihydrolipoyl]- demethylmenaquinol-8 demethylmenaquinol-6 adenolsyltransferase/ diphosphate valine--tRNA ligase: AMP synthase: reductase subunit beta: L-tyrosine bifunctional guanylyltransferase: demethylmenaquinone IMCC3088_RS05695 IMCC3088_RS09285 degradation I glycine cleavage system L-asparagine amidase: acid--CoA ligase: glutamyltransferase: ggt 3-phosphate diacylglyceryl IMCC3088_RS10885 diphospho)-2-C-methyl- dehydrogenase carboxyltransferase reductase: L-lysine nucleoside- guanylyl IMCC3088_RS02410 bifunctional bifunctional cobinamide IMCC3088_RS02655 an L-valyl- IMCC3088_RS03180 2-iminopropanoate aminomethyltransferase IMCC3088_RS11970 IMCC3088_RS00495 dihydrolipoyl 5'-nucleotidase: choline RS09550 choline methyltransferase/2- octaprenyl L-threonylcarbamoyladenylate anthranilate degradation I IMCC3088_RS09180 gamma- acyltransferase: transferase: aminoacylase: D-: kinase/phosphatase: subunit: IMCC3088_RS04060 diphosphate kinase: demethylmenaquinone demethylmenaquinone ATP-dependent Val ribonucleotide-diphosphate adenylyltransferase/ dehydrogenase: thr RS07425 thr molybdenum methoxy-6-polyprenyl- glutathione [tRNA ] T: gcvT [+ 15 isozymes] IMCC3088_RS04845 IMCC3088_RS04825 methyltransferase/2- diphosphate synthase: methyltransferase/2- Val asp amidase: glutamyltransferase: IMCC3088_RS05405 IMCC3088_RS07600 IMCC3088_RS10895 2-phospho-4-(cytidineIMCC3088_RS11120 a phosphorylatedIMCC3088_RS07870 a (3R,7Z)-3-[+ 12 isozymes] IMCC3088_RS11555 IMCC3088_RS10595 cofactor adenolsyltransferase: a tRNA 6 a diacylglycerol reductase subunit alpha: deadenyltransferase: a [lipoyl-carrier 1,4-benzoquinol N -L- IMCC3088_RS01860 IMCC3088_RS10140 dipalmitoyl an aliphatic [+ 5 isozymes] methoxy-6-polyprenyl- IMCC3088_RS00435 methoxy-6-polyprenyl- aspartate asn 18-hydroxystearoyl- an α-(γ-L- acyl-carrier protein sn-glycerol prolipoprotein a carboxylate 5'-diphospho)-2-C- a [glutamine isocitrate hydroxyhexacos- 6 all-trans-octaprenyl IMCC3088_RS02855 threonylcarbamoyladenine AMP diphosphate phosphatidate L-amino acid IMCC3088_RS00500 IMCC3088_RS01190 protein]-N - xanthosine dITP an anion RS04970 an anion methylase: ubiE 1,4-benzoquinol 1,4-benzoquinol aminotransferase : CoA L-cysteinyl-glycine glutamyl)-L- 1-phosphate (with signal methyl-D-erythritol synthetase]-O dehydrogenase malonyl-CoA 7-enoyl-[acp] diphosphate adenosylcobalamin synthase: acrylate CDP lipoyl-L-lysine predicted menaquinol-9 methylase: ubiE methylase: ubiE pyruvate family protein: IMCC3088_RS05400 amino acid peptide) 4 -(5'-adenylyl) IMCC3088_RS03640 L-glutamine ABC menaquinol-8 menaquinol-6 IMCC3088_RS00220 asparaginase: -L-tyrosine Peptide Peptide Cell Structure Biosynthesis an N 6 -L- degradation I transporter [+ 2 isozymes] IMCC3088_RS06530 an anion RS06460 an anion ala threonylcarbamoyladenine 37 of a peptide alanine--tRNA ligase: oxaloacetate asp peptidoglycan biosynthesis I (meso-diaminopimelate containing) in tRNA 2251 a phosphorylated a (5Z)-3- IMCC3088_RS02875 an L-alanyl- gln (15Z)- a 5-L-glutamyl- 1-palmitoylglycerol phosphoenol an [HPr]- UDP guanosine a cis-delta15-3- imidazole glycerol an amino acid a myristoyl-[acp] oleate isocitrate L-saccharopine oxotetracos- asp Fatty Acid and Biosynthesis [tRNA Ala ] tetracosenoate pyruvate L- GTP H O in 23S rRNA IDP predicted UDP-N-acetyl- [peptide] 3-phosphate 2 ribonucleotide-diphosphate oxo-C34:1-[acp] Ala phosphate synthase long-chain-fatty- gamma- long-chain-fatty- phosphoenolpyruvate- 23S rRNA dehydrogenase saccharopine 5-enoyl-[acp]3-oxoacyl-ACP 3-oxoacyl-ACP Ca 2+ RS14270 Ca 2+ ABC α-D-glucosamine a tRNA 1-acyl-sn-glycerol- GTPase HflX: reductase subunit beta: bifunctional isocitrate aspartate Mo 2+ Mo 2+ subunit HisH: hisH acid--CoA ligase: glutamyltransferase: ggt acid--CoA ligase: -protein (guanosine(2251)-2'- dehydrogenase: reductase: reductase: nucleoside- transporter palmitate biosynthesis II ( and plants) UDP-N-acetylglucosamine 3-phosphate IMCC3088_RS06365 IMCC3088_RS00495 dehydrogenase aminotransferase superpathway of (Kdo) -lipid A biosynthesis N-end rule pathway I (prokaryotic) [+ 7 isozymes] Secondary Metabolite Degradation IMCC3088_RS11970 gamma- acyltransferase: IMCC3088_RS11970 : O)-methyltransferase kinase/phosphatase: IMCC3088_RS06880 IMCC3088_RS04060 IMCC3088_RS04060 diphosphate kinase: of Mo2+ 2 gondoate biosynthesis (anaerobic) 1-carboxyvinyltransferase: [+ 2 isozymes] ribonucleotide-diphosphate family protein: Glu [+ 15 isozymes] glutamyltransferase: IMCC3088_RS05405 [+ 15 isozymes] an [HPr protein]- IMCC3088_RS07610 RlmB: IMCC3088_RS07870 [+ 2 isozymes] [+ 12 isozymes] [+ 12 isozymes] IMCC3088_RS10595 IMCC3088_RS14285 leucyl/phenylalanyl- 1-palmitoyl- + reductase subunit alpha: a (3R,5Z)-3- a cis-delta15-3- IMCC3088_RS00220 Ca 2+ RS13990 Ca 2+ a (3R)-3- π phosphate GDP H IMCC3088_RS13595 an isocitrate 2+ 2+ an acetoacetyl-[acp] anhydromuropeptides recycling (Z)-15- an IMCC3088_RS10140α-(5-L- N -phospho- pyruvate 2-O- Fe RS08265 Fe UDP-N-acetyl- hydroxytetradecanoyl- UDP-N-acetyl-α- asparagine-- tRNA--protein AMP diphosphate acyl-carrier protein 2-myristoyl diphosphate AMP oleoyl-CoA IMCC3088_RS00500 allysine Glu hydroxytetracos- hydroxyC34:1- [+ 2 isozymes] a malonyl-[acp] an oleoyl-[acp] Secondary Metabolite Biosynthesis asn tetracosenoyl-CoA L-histidine 2251 dehydrogenase ITP α D-glucosamine- tRNA ligase: transferase: a peptide glutamyl)- phosphatidate methylguanosine 5-enoyl-[acp] [acp] oxaloacetate 3-oxoacyl-ACP -D-glucosamine [acp] beta-ketoacyl-[acyl- a [protein] GlcNAc-1,6- dUDP enolpyruvate IMCC3088_RS14155 an N-terminal IMCC3088_RS04930 amino acid in 23S rRNA reductase: carrier-protein] an L-asparaginyl- N-terminal L- anhMurNAc-L-Ala- chloride RS07950 chloride acyl-[acyl-carrier- enterobactin biosynthesis β Asn arginyl-[protein] hemin RS10515 hemin IMCC3088_RS04060 synthase I: -carotene biosynthesis preQ biosynthesis myo-inositol biosynthesis UDP-N- [tRNA ] leucyl-L-arginine γ-D-Glu-DAP-D-Ala Amine and Polyamine Degradation protein]--UDP-N- 0 acetylenolpyruvoylglucosamine tRNA Asn molybdopterin a DNA containing an (11Z)-3- [+ 12 isozymes] IMCC3088_RS00415 a peptidoglycan dimer sn-glycero-3- a non-methylated 3-oxo- D-ribulose acetylglucosamine chorismate reductase: IMCC3088_RS05580 quinoxaline-2- a cis- 1-palmitoylglycerol adenine molybdate a cyclobutane N5-CAIR a 3-oxohexacosanoyl- a 3-oxoicosanoyl- oxooctadec- a cis-delta21-3- a (3R)-3- beta-ketoacyl synthase: all-trans-lycopene D-glucopyranose leucyl/phenylalanyl- N-acetyl- 4-aminobutanoate degradation I with pentapeptide acyl-carrier protein phosphoethanolamine acyl-carrier protein ribosomal docosapentaenoyl-CoA 5-phosphate O-acyltransferase: ala UDP-N-acetyl- urea degradation I carboxyl adenylate vaccenoyl-[acp] 3-phosphate dinucleotide glycerophosphoryl pyrimidine dimer 5-(carboxyamino)imidazole [acp] [acp] 11-enoyl-[acp] oxo-C40:1-[acp] 3-oxoacyl- chloride RS07715 chloride hydroxybutanoyl- an (11Z)-3- IMCC3088_RS00975 lycopene beta-cyclase: GTP 6-phosphate tRNA--protein anhydromuranmyl- stems (meso- acyl carrier protein: 1-acyl-sn-glycerol- molybdopterin deoxyribodipyrimidine 3-oxoacyl-ACP malonyl CoA-acyl 3-oxoacyl-ACP 3-oxoacyl-ACP 3-oxoacyl-ACP protein L11ribosomal lipid A RS08980 lipid A IMCC3088_RS00925 α-D-muramate diester ribonucleotide mutase: purE [acyl-carrier- [acp] D-arabinose 5- oxo-icos-11- IMCC3088_RS11195 GTP cyclohydrolase transferase: L-alanine amidase: diaminopimelate IMCC3088_RS05205 3-phosphate molybdenumtransferase photo-lyase: reductase: carrier protein reductase: reductase: reductase: protein L11 4-aminobutanoate N-acetylmuramoyl- phosphodiesterase: protein] (3R)-3-hydroxybutanoyl- phosphate isomerase: enoyl-[acp] γ I FolE: IMCC3088_RS04930 a [protein] IMCC3088_RS06175 urea containing) acyl carrier protein: acyltransferase: MoeA: IMCC3088_RS09100 5-(carboxyamino)imidazole IMCC3088_RS04060 transacylase: IMCC3088_RS04060 IMCC3088_RS04060 IMCC3088_RS04060 methyltransferase: UDP-3-O-[(3R)-3- -carotene UDP-N- asp an N-terminal 4-aminobutyrate γ L-alanine amidase: [acyl-carrier protein] IMCC3088_RS14265 3-oxoacyl-ACP IMCC3088_RS14110 Ins(3)P Glu aspartate--tRNA ligase: N-terminal L- N-acetylmuramoyl- L-alanyl- -D- a peptidoglycan dimer IMCC3088_RS09690 IMCC3088_RS05405 IMCC3088_RS00410 IMCC3088_RS06490 ribonucleotide mutase: [+ 12 isozymes] IMCC3088_RS05215 [+ 12 isozymes] [+ 12 isozymes] [+ 12 isozymes] prmA reductase: a cation RS08635 a cation sodium sodium hydroxymyristoyl]- isochorismate acetylmuramate- L-lysyl-[protein] aminotransferase: withIMCC3088_RS06385 pentapeptide stem a quinoxaline-2- 1-palmitoyl-2- MoO - sn-glycerol [+ 3 isozymes] a (3R)-3- a (3R)-3- a (3R,11Z)-3- a cis-delta21-3- a methylated fabG RS09005 dehydratase: aldehydo-D- reductase: IMCC3088_RS00625 an L-aspartyl- leucyl-L-lysine L-alanine amidase: glutamyl-meso-2,6- 2 ethanolamine two adjacent pyrimidine IMCC3088_RS04730 sulfate sulfate N-acetyl-α-D- lycopene beta-cyclase: GTP -L-alanine IMCC3088_RS11825 acyl-carrier protein cis-vaccenoyl AMP molybdopterin 3-phosphate hydroxyhexacosanoyl- a malonyl-[acp] hydroxyicosanoyl- hydroxyoctadec- hydroxyC40:1- ribosomal (5Z,8Z,11Z,14Z,17Z) arabinose 5- IMCC3088_RS05005 inositol asp diaminopimeloyl- (meso-diaminopimelate AMP carboxyl-[aryl- nucleosides in DNA IMCC3088_RS00920 glucosamine isochorismatase: IMCC3088_RS11195 cyclohydrolase glutamate racemase: [tRNA ] IMCC3088_RS06385 succinate semialdehyde urea-1-carboxylate phosphatidate CAIR [acp] [acp] 11-enoyl-[acp] [acp] protein L11 -3R-hydroxy- monophosphatase: ligase: murC asp containing) carrier protein] cofactor phosphate [+ 10 isozymes] 7,8- IMCC3088_RS06045 tRNA D-alanyl-D-alanine docosapentaenoyl-CoA a (2E)-but- UDP-3-O-[3- IMCC3088_RS10430 all-trans- I FolE: folE β γ a cation RS11005 a cation a (3R,11Z)-3- dihydroneopterin IMCC3088_RS10610 N-acetyl- -D- L-alanyl- -D- NAD-dependent allophanate hydrolase: 2-enoyl-[acp] hydroxymyristoyl] N- (2S,3S)-2,3-dihydroxy- β-carotene UDP-N-acetyl- superpathway of glycolysis and Entner-Doudoroff glucosamine(anhydrous) glutamyl-meso-2,6- a sugar RS04005 a sugar hydroxy-icos- 3'-triphosphate α succinate-semialdehyde IMCC3088_RS08775 crotonyl-[acyl-carrier- acetylglucosamine 2,3-dihydrobenzoate myo-inositol D-glt -D-muramoyl- -N-acetylmuramate 1-cis- a 2'- a [LuxE]-S- 4-phospho- a (6Z)-3- a 1-acyl-sn 11-enoyl-[acp] 6-carboxytetrahydropterin diaminopimeloyl- dehydrogenase: gabD allophanate hydrolase: 18-hydroxyoleate a cis- a nucleoside a 3-oxopimeloyl- a cis-delta17-3- protein] reductase: D-arabinofuranose deacetylase: L-alanine D-glucopyranose vaccenoylglycerol- a ribonucleic acid deoxyribonucleoside [DNA] (long-chain fatty a mercapturate a protein hydroxy-L- oxooctadec- -glycerol 3- Ap4A (3R,11Z)-3-hydroxy- 2,3-dihydro-2,3- synthase QueD: D-alanine NAD-dependent IMCC3088_RS08785 IMP vaccenoyl-[acp] triphosphate [acp] methyl oxo-C36:1-[acp] a cation RS13775 a cation IMCC3088_RS09665 5-phosphate IMCC3088_RS06095 6-phosphate long-chain-fatty- 3-phosphate 5'-triphosphate acyl)-L-cysteine aminoacylase: endopeptidase La: threonine 3-oxoacyl-ACP 6-enoyl-[acp]3-oxoacyl-ACP 3-oxoacyl-ACP phosphate bis(5'-nucleosyl)- icos-11-enoyl- dihydroxybenzoate IMCC3088_RS01000 tyr succinate-semialdehyde 1-acyl-sn-glycerol- DNA-directed DNA Acyl protein 4-hydroxythreonine- 1-acyl-sn-glycerol- citrate RS13915 citrate 3-deoxy-8- UDP-3-O-(3- UDP-N- tyrosine--tRNA ligase: bifunctional acid--CoA ligase: IMCC3088_RS10885 IMCC3088_RS05145 reductase: reductase: reductase: tetraphosphatase [acp] dehydratase: dehydrogenase: fabG dehydrogenase: gabD ammonium 3-phosphate RNA polymerase III subunit epsilon: synthase/acyl-CoA 4-phosphate 3-phosphate a butanoyl-[acp] phosphooctulonate hydroxymyristoyl) ser 6-carboxy-5,6,7,8- acetylmuramoylalanine- IMCC3088_RS13145 an L-tyrosyl- 1,6-anhydro-N- phosphoribosylaminoimidazolecarboxamide IMCC3088_RS11970 IMCC3088_RS04060 IMCC3088_RS04060 IMCC3088_RS04060 (symmetrical): α IMCC3088_RS00920 coenzyme A acyltransferase: subunit alpha: IMCC3088_RS05040 reductase RfbN: aminoacylase: endopeptidase La: dehydrogenase PdxA: acyltransferase: - -D-glucosamine tetrahydropterin -D-glutamate ligase: Tyr acetyl-β-muramate γ + + synthase: 2,3-dihydroxybenzoate [tRNA ] L-alanyl- -D-glutamyl- succinate formyltransferase/inosine [+ 15 isozymes] IMCC3088_RS05405 IMCC3088_RS00375 [+ 10 isozymes] IMCC3088_RS09680 IMCC3088_RS10895 IMCC3088_RS11260 3-amino-1- IMCC3088_RS03605 [+ 12 isozymes] [+ 12 isozymes] [+ 12 isozymes] a 1,2-diacyl-IMCC3088_RS05405 IMCC3088_RS03620 Na RS12140 Na UDP-3-O-(3- a (2E,11Z)-icosa- Tyr 1,2-dicis- a (3R)-3- a (3R,6Z)-3- a cis-delta17-3- beta-ketoacyl synthase: IMCC3088_RS08840 holo-ACP synthase: holo-ACP synthase: 7-carboxy-7- IMCC3088_RS06055 a tRNA anhydro-N- meso-diaminopimelate monophosphate cyclohydrolase: purH a [LuxE]- a long-chain an L-cysteine- sulfate RS04990 sulfate 2,11-dienoyl-[acp] 18-hydroxyoleoyl- acyl-carrier protein vaccenoyl- [+ 4 isozymes] [DNA] acetate a peptide a peptide hydroxyacetone hydroxypimeloyl- hydroxyoctadec- hydroxyC36:1- sn-glycerol IMCC3088_RS00975 hydroxymyristoyl) deazaguanine acetylmuramic FAICAR AMP diphosphate L-cysteine fatty aldehyde S-conjugate ADP IMCC3088_RS02455 IMCC3088_RS02455 UDP-N-acetyl- UDP-N- CoA phosphatidate a ribonucleic acid 1-phosphate [acp] methyl ester 6-enoyl-[acp] [acp] 3-phosphate [+ 2 isozymes] KDO-8P glucosamine N- (2E,11Z)-icosa- synthase: meso- glucose-6-phosphate acid kinase: α acetylmuramate:L- + + acyltransferase: a holo-[EntB aryl- a holo-[EntF L- -D-muramoyl-L- 6-phospho isomerase: Na RS09945 Na a 3-oxohexanoyl- 2,11-dienoyl- 2,3-dihydroxybenzoyl L-seryl-adenylate IMCC3088_RS00680 diaminopimelate IMCC3088_RS13135 alanyl-gamma-D- ala ala IMCC3088_RS00915 carrier protein] seryl-carrier protein] alanyl-D-glutamate D-glucono- IMCC3088_RS10640 [acp] 3-deoxy-D-manno- [acp] reductase: adenylate 7-carboxy-7- tryptophan-- β glutamyl- meso- RS00230 Trp 1,5-lactone N-acetyl- -muramate (3R,5S)-1-pyrroline-3- (12Z,15Z)-9,10- octulosonate UDP-3-O-(3- IMCC3088_RS01270 deazaguanine a tRNA diaminopimelate ligase: 7-hydroxylaurate an N-acyl- a 3-oxotetracosanoyl- a 3-oxoglutaryl- a cis-delta13-3- 3-oxoacyl-ACP UDP-N-acetylmuramoyl- tRNA ligase: 6-phosphate DL-allothreonine ethylnitronate 3'-dephospho- hydroxy-5-carboxylate epoxyoctadeca- MEP 3',5'-ADP gly gly 8-phosphate hydroxymyristoyl) 6-phosphogluconolactonase: IMCC3088_RS08510 ATP H O ATP L-aspartate [acp] [acp] methyl ester oxo-C32:1-[acp] FMN ATP Na + RS00260 Na + 7-cyano-7- L-alanyl-D-glutamate-- IMCC3088_RS10015 an L-tryptophanyl- long-chain-fatty- 2-nitropropane 2 CoA 12,15-dienoate reductase: phosphatase: glucosamine N- a gondoyl-[acp] α serine pyrroline-5- succinylglutamate 3-oxoacyl-ACP 3-oxoacyl-ACP 3-oxoacyl-ACP 1-deoxy-D-xylulose- Trp IMCC3088_RS01475 UDP-N-acetyl- -D- ATPase/: dephospho- 3'(2'),5'-bisphosphate IMCC3088_RS04060 deazaguanine 2, 6-diaminopimelate [tRNA ] hydroxymethyltransferase: glyA acid--CoA ligase: dioxygenase: carboxylate reductase: reductase: epoxide hydrolase: reductase: reductase: bifunctional 5-phosphate IMCC3088_RS14260 acyltransferase: synthase: ligase: D-gluconate muramoyl-L-alanyl- IMCC3088_RS04865 CoA kinase: desuccinylase/ nucleotidase CysQ: [+ 12 isozymes] a 2,3-dihydroxybenzoyl- a seryl-[EntF L- trp IMCC3088_RS11970 IMCC3088_RS02070 IMCC3088_RS09315 IMCC3088_RS04060 IMCC3088_RS05415 IMCC3088_RS04060 IMCC3088_RS04060 kinase/FMN reductoisomerase: IMCC3088_RS09710 IMCC3088_RS00685 IMCC3088_RS06040 D-ala 6-phosphate N-acetyl-D-glucosamine γ-D-glutamyl-meso- serine [+ 3 isozymes] IMCC3088_RS06120 aspartoacylase: IMCC3088_RS12240 a (3R)-3- Kdo [EntB aryl-carrier protein] seryl-carrier protein] [+ 15 isozymes] [+ 2 isozymes] (12Z,15Z)-9,10- adenylyltransferase: IMCC3088_RS00895 Na + RS07530 Na + UDP-2-N,3-O-bis[(3R)- F6P 2,6-diaminopimelate hydroxymethyltransferase: glyA [unspecified + trans-4-hydroxy- IMCC3088_RS11810 a (3R)-3-[+ 12 isozymes] a (3R)-3-[+ 12 isozymes] a cis-delta13-3-[+ 12 isozymes] 1-deoxy-D- phosphogluconate 6-phosphate H + phosphate ADP ADP coenzyme A H IMCC3088_RS05860 hydroxyhexanoyl- 3-hydroxytetradecanoyl]- preQ D-alanine--D- gly acetaldehyde 7-hydroxylauroyl- degradation nitrite acetaldehyde L-proline a carboxylate asp hydroxytetracosanoyl- dihydroxyoctadeca- hydroxyglutaryl- hydroxyC32:1- xylulose 5- AMP [acp] 3-deoxy-manno- 0 UDP-N-acetyl- dehydratase: AMP diphosphate FAD α-D-glucosamine biotin-carboxyl carrier protein assembly α alanine ligase: fructose- CoA products] [acp] 12,15-dienoate [acp] methyl ester [acp] phosphate (3R)-3-hydroxyhexanoyl- octulosonate -D-muramoyl- IMCC3088_RS01495 6-: cytidylyltransferase: UDP-2,3- L-alanyl-γ-D- IMCC3088_RS06075 thr bisphosphatase: Na + RS03855 Na + [acyl-carrier protein] threonine--tRNA ligase: IMCC3088_RS08515 IMCC3088_RS05575 diacylglucosamine biotin carboxyl- an N-(2,3-dihydroxybenzoyl) glutamyl-meso-2,6- KDGP IMCC3088_RS06475 D-glucosamine dehydratase: diphosphatase: D-alanyl-D-alanine IMCC3088_RS07100 an L-threonyl- 6-phosphate carrier protein -seryl-[EntF L- diaminopimelate fructose 1,6- a very-long- a long-chain 1-stearoyl- an [amino group carrier protein]-C- (2E,6Z,9Z,12Z,15Z,18Z,21Z) (2E,6Z,9Z,12Z,15Z,18Z) a protein with (9Z,12Z)-15,16- a (5Z)-3- 3-oxo- IMCC3088_RS00420 CMP-Kdo IMCC3088_RS05265 [tRNA Thr ] DHAP a peptidoglycan glycerophosphoserine N-acetyl-L- a cis-delta11-3- a reduced seryl-carrier protein] bisphosphate phosphoglucosamine chain fatty acid fatty acyl-[acyl- sn-glycerol terminal-γ-(L-ornithyl)-L-glutamate -tetracosaheptaenoyl-CoA -tetracosahexaenoyl-CoA reduced L- epoxyoctadeca- oxododec- icosatrienoyl-CoA a reduced 3-hydroxyacyl- bifunctional biotin- a tRNA Thr N-acetylmuramoyl- aspartate oxo-C30:1-[acp] rubredoxin UDP-2,3- UDP-N- 2-keto-3- fructose-1,6- mutase: glmM long-chain-fatty- carrier protein] 1-acyl-sn-glycerol-3-phosphate acetylornithine glycerophosphoryl cysteine residuesDSBA oxidoreductase: 9,12-dienoate succinylglutamate 3-oxoacyl-ACP 5-enoyl-[acp]3-oxoacyl-ACP 3-oxoacyl- H O c-type -[acetyl-CoA- 2 [acp] dehydratase: diacylglucosamine acetylmuramoylalanyl- deoxygluconate 6- bisphosphate aldolase: triose-phosphate L-alanine amidase: acid--CoA ligase: enoyl-CoA hydratase: enoyl-CoA hydratase: diester IMCC3088_RS13735 epoxide hydrolase: reductase: reductase: [acyl-carrier- carboxylase] D-glucosamine 3-phosphate aminotransferase: desuccinylase/ rubredoxin reductase: RS02555 ancytochrome oxidized IMCC3088_RS00920 hydrolase: D-glutamyl-2, 6- phosphate aldolase: IMCC3088_RS09240 isomerase: IMCC3088_RS06385 IMCC3088_RS05520 IMCC3088_RS00065 IMCC3088_RS00065 phosphodiesterase: IMCC3088_RS05415 IMCC3088_RS04060 IMCC3088_RS05005 protein] synthetase/biotin 1-phosphate ditrans,octacis- acyltransferase: IMCC3088_RS00510 DSBA oxidoreductase: aspartoacylase: IMCC3088_RS12800 O c-type a (2E)-hex- IMCC3088_RS01550 enterobactin diaminopimelate--D- IMCC3088_RS01485 IMCC3088_RS01460 [+ 15 isozymes] an [amino group carrier protein]- (3S)-hydroxy- (3S)-hydroxy- IMCC3088_RS06490 reductase: 2 operon repressor: Nucleoside and Nucleotide Degradation a peptidoglycan undecaprenyldiphospho- IMCC3088_RS05405a 1-stearoyl 2- IMCC3088_RS02190 (9Z,12Z)-15,16- IMCC3088_RS11810 a cis-delta11-3-[+ 12 isozymes] a (3R,5Z)-3-[+ 10 isozymes] cytochromea reduced 2-enoyl-[acp] alanyl-D-alanine ligase: UDP-N- C-terminal-γ-(L-glutamate 5- (6Z,9Z,12Z,15Z,18Z,21Z) (6Z,9Z,12Z,15Z,18Z)- sn-glycerol a protein with an oxidized fabG ser pentapeptide N-acetyl-(N- a very-long-chain acyl-carrier protein acyl-sn-glycerol ser dihydroxyoctadeca- acetate asp hydroxyC30:1- hydroxydodec- H O c-type lipid X IMCC3088_RS03965 D-glyceraldehyde acetylglucosamine AMP diphosphate semialdehyde-2-yl)-L-glutamate -tetracosahexaenoyl-CoA tetracosapentaenoyl-CoA 3-phosphate rubredoxin 3R-hydroxy- 2 hexanoyl-[acyl-carrier- IMCC3088_RS06045 serine--tRNA ligase: fatty acyl-CoA a disulfide bond 9,12-dienoate cytochrome Carbohydrate Biosynthesis 3-phosphate diphosphorylase/ pyrimidine deoxyribonucleotides acetylglucosaminyl)muramate 3-phosphate [acp] 5-enoyl-[acp] icosatrienoyl-CoA RS04765 an oxidized protein] reductase: lipid-A-disaccharide a biotinylated IMCC3088_RS04955 an L-seryl- pyrimidine deoxyribonucleosides degradation ser glucosamine-1- dephosphorylation O c-type [BCCP monomer] UDP-N-acetyl- [tRNA ] glyceraldehyde 2 IMCC3088_RS09665 synthase: phosphate N- a reduced gluconeogenesis I α-D-muramoyl- a tRNA ser 3-phosphate nucleoside triphosphate cytochrome IMCC3088_RS00930 UDP-α-D-glucuronate GDP-mannose biosynthesis acetyltransferase: 2'-deoxycytidine a cis-delta19- (9Z,15Z)-12,13- 1-cis- a (9Z)-3- H O c-type L-alanyl-γ-D- dehydrogenase: pyrophosphohydrolase: a 2,3,4-saturated a 2,3,4-saturated 2- α OPC8-3- a cis-delta19-3- L(or D)-O- 2 a hexanoyl-[acp] lipid A -linolenate [DNA] icosapentaenoate coenzyme A acetyl-CoA propanoyl-CoA 37-methoxy-38- a protein epoxy-octadeca- vaccenoylglycerol- oxooctacos- DHAP cytochrome biosynthesis (from glutamyl-meso-2,6- di-trans,octa-cis gapA glmU IMCC3088_RS02440 fatty acyl-[acp] lysophosphatidate hydroxyacyl-CoA oxo-C38:1-[acp] phosphoserine RS02545 an oxidized disaccharide (S)-malate D-glucopyranose long-chain-fatty- exodeoxyribonuclease long-chain-fatty- acetyl-CoA methyl-C57:1-[acp] 9,15-dienoate 3-phosphate 9-enoyl-[acp] NAD(P)H-dependent UDP-glucose) diaminopimeloyl- N-acetyl-α-D- dCTP dCMP 1-acyl-sn-glycerol- ATP-dependent 1-acyl-sn-glycerol- 3-oxoacyl-ACP 3-oxoacyl-ACP phosphoserine O c-type 3-oxoacyl- 6-phosphate -undecaprenyl enoyl-CoA hydratase: cyclopropane-fatty-acyl- 2 tetraacyldisaccharide a biotinylated UDP-α-D-glucose glucose-6-phosphate 13-DPG glucosamine acid--CoA ligase: III: IMCC3088_RS06480 acid--CoA ligase: acetyltransferase: epoxide hydrolase: 3-phosphate reductase: reductase: glycerol-3-phosphate phosphatase: a reduced [acyl-carrier- D-alanyl-D-alanine phosphate 3-phosphate IMCC3088_RS00065 phospholipid synthase: Clp protease cytochrome 4'-kinase: [BCCP dimer] UDP-glucose 6- isomerase: 1-phosphate 2'-deoxyuridine thymidine IMCC3088_RS05520 exodeoxyribonuclease IMCC3088_RS05520 IMCC3088_RS06510 IMCC3088_RS05415 acyltransferase: IMCC3088_RS04060 IMCC3088_RS04060 dehydrogenase: thrH H O c-type pro dUTP diphosphatase: acyltransferase: proteolytic subunit: 2 protein] dehydrogenase: proline--tRNA ligase: phosphoglycerate [+ 15 isozymes] [+ 15 isozymes] [+ 8 isozymes] 3-oxo-2-(cis-2'- IMCC3088_RS04455 IMCC3088_RS12220 IMCC3088_RS05570 biotin carboxylase: malate dehydrogenase: IMCC3088_RS10640 UDP-N- IMCC3088_RS06550 thymidine IMCC3088_RS05405a 2,3,4-saturated a 2'- III: IMCC3088_RS09445 IMCC3088_RS05155 (9Z,15Z)-12,13- 1,2-dicis-IMCC3088_RS05405 a cis-delta19-3-[+ 12 isozymes] a cis-delta9-3-[+ 12 isozymes] [+ 2 isozymes] RS02560 cytochrome reductase: acetyl-CoA carboxylase malate dehydrogenase, IMCC3088_RS06150 IMCC3088_RS00615 kinase: icosapentaenoyl- β pentenyl)-cyclopentane- a cis-methoxy- sn-glycerol an oxidized IMCC3088_RS04850 IMCC3088_RS09885 malate dehydrogenase: F6P an L-prolyl- acetylglucosamine : acyl-carrier protein 1,2-diacyl-sn- deoxyribonucleoside [DNA] -ketovaleryl-CoA a peptide a peptide dihydroxyoctadeca- vaccenoyl- hydroxyC38:1- hydroxyC28:1- serine fabG lipid IV Pro nucleoside triphosphate AMP diphosphate α-linolenoyl-CoA CoA O c-type A carboxyltransferase NAD-requiring: [tRNA ] IMCC3088_RS09245 1-octa-2-enoyl-CoA C59-meroacyl-[acp] 3-phosphate 2+2 2+ IMCC3088_RS07430 UDP-glucose undecaprenyldiphospho- diphosphorylase/ IMCC3088_RS02525 glycerol 3-phosphate 5'-monophosphate 9,15-dienoate phosphatidate [acp] [acp] Co Co [+ 2 isozymes] acetyl-CoA IMCC3088_RS07430 mannose-1-phosphate a tRNA Pro pyrophosphohydrolase: RS03615 cytochrome subunit: dehydrogenase: 3-phospho- 2+ 2+ carboxylase biotin guanylyltransferase/ N-acetylmuramoyl-L- glucosamine-1- IMCC3088_RS02440 Mg Mg a 3-oxooctanoyl- 3-deoxy-D-manno- IMCC3088_RS04845 IMCC3088_RS09770 γ D-glycerate phosphate N- dUTP dUMP thymine carboxylase subunit: UDP-α-D- mannose-6-phosphate alanyl- -D-glutamyl-meso [acp] octulosonic acid [+ 4 isozymes] oxaloacetate 2,3-bisphosphoglycerate- acetyltransferase: IMCC3088_RS03515 isomerase: cpsB -2,6-diaminopimeloyl- α a [2-oxoglutarate- a long-chain 1-chloro-2,4- (1S,2R)-1- 1-cis- a cytidine 1402 a [protein]-L- transferase: glucuronate uracil 2-deoxy- - an L-phenylalanyl- an N-terminal sn-glycerol 2+ 2+ D-alanyl-D-alanine independent glmU dehydrogenase a sulfurated pristanate glutathione C-(indol-3- glycerophosphoglycerol MEP CTP vaccenoylglycerol- 5-oxo-L-proline Co Co 3-oxoacyl-ACP a carboxylated- Phe fatty aldehyde dinitrobenzene in 16S rRNA β-isoaspartate RS07215 IMCC3088_RS01155 pyruvate D-mannopyranose phenylalanine--tRNA D-ribose 1- SAM [tRNA ] arginyl-[protein] ser 3-phosphate GTP 2+ 2+ undecaprenyldiphospho- phosphoglycerate 5-hydroxy-CTP 5-hydroxy-CMP E2 protein] N 6 - [sulfur carrier] long-chain-fatty- Acyl protein glutathione S- yl)glycerol glycerophosphoryl 3-phosphate 16S rRNA 5-oxoprolinase: protein-L- Mg Mg reductase: biotinylated phosphoenolpyruvate 6-phosphate UDP-N-acetyl- phosphate leucyl/phenylalanyl- 2-C-methyl-D- glycerol-3-phosphate 1-acyl-sn-glycerol- muramoylpentapeptide beta-N- ligase subunit beta: mutase: α UTP and CTP dephosphorylation I octanoyl-L-lysine acid--CoA ligase: synthase/acyl-CoA transferase: 3-phosphate tryptophan synthase diester (cytosine(1402)-N(4) IMCC3088_RS10420 isoaspartate O- IMCC3088_RS04060 α-Kdo-(2->6) [BCCP dimer] carboxykinase (ATP): -D-glucosamine lipoyl synthase: tRNA--protein erythritol 4-phosphate acyltransferase: 3-phosphate guanylate cyclase- phosphomannomutase: acetylglucosaminyltransferase: IMCC3088_RS07075 IMCC3088_RS07340 IMCC3088_RS11970 reductase RfbN: IMCC3088_RS13115 subunit beta: phosphodiesterase: )-methyltransferase: methyltransferase: [+ 12 isozymes] -lipid IV IMCC3088_RS12915 IMCC3088_RS01655a [2-oxoglutarate transferase: cytidylyltransferase: IMCC3088_RS12225 acyltransferase: 5-oxoprolinase: related protein: A IMCC3088_RS14160 phenylalanine--tRNA UTP 2+ 2+ a (3R)-3- IMCC3088_RS06065 [+ 15 isozymes] IMCC3088_RS09680 [+ 7 isozymes] IMCC3088_RS05335 IMCC3088_RS06490 α ω 4 IMCC3088_RS06025 IMCC3088_RS10425 pcm Mg RS10700 Mg KDO transferase: O-antigen building blocks biosynthesis (E. coli) phe 2-phospho- an unsulfurated dehydrogenase IMCC3088_RS04930 D-glyceraldehyde 4-(cytidine 5'-IMCC3088_RS08855 1-C16:0- , - 1-cis-vaccenoyl-IMCC3088_RS05405 an N - IMCC3088_RS06290 a protein L-β- hydroxyoctanoyl- α-D-mannose lipid II (meso ligase subunit alpha: 5'-deoxyadenosine met L-phenylalanyl-L- + a long-chain 2,4-dinitrophenyl- trp sn-glycerol D-glycerate 6 Phe H NADPH glycerol dicarboxyl-2- 1402 IMCC3088_RS01155 phosphoenol diaminopimelate IMCC3088_RS07080 CTP synthetase: pyrG [sulfur carrier] E2 protein] N a tRNA fatty acyl-CoA S-glutathione 3-phosphate 3-phosphate diphospho)-2-C- 2-palmitoleoyl methylcytidine Glu cyclic-GMP isoaspartate [acp] (Kdo) -lipid A biosynthesis I UDP-α-D- α 1-phosphate an L-phenylalanyl- AMP diphosphate pristanoyl-CoA arginyl-[protein] lysophosphatidate α 2 pyruvate -D- D-glucopyranose phosphopyruvate -lipoyl-L-lysine methyl-D-erythritol phosphatidate in 16S rRNA -methyl ester (3R)-3-hydroxyoctanoyl- α-Kdo-(2-> containing) [tRNA Phe ] galactose glucopyranose mannose-1-phosphate 2+ 2+ 4)-α-Kdo-(2- α-Kdo-(2-> phosphopyruvate 6-phosphate a tRNA Phe hydratase: eno CTP UMP Mg RS11290 Mg [acyl-carrier protein] 1-phosphate glucose-6-phosphate guanylyltransferase/ >6)-lipid IV 4)-α-Kdo-(2- hydratase: eno glucose-1-phosphate dehydratase: A isomerase: mannose-6-phosphate phosphoenol 5'-nucleotidase: >6)-lipid IV lipid A biosynthesis UDP-Galf thymidylyltransferase: a [pyruvate methylesterified 1,4- 3-benzyl-3,6-dihydroxy- (E)-4-hydroxy-3- 3-oxo-2-(cis- a 1-alkyl-sn IMCC3088_RS00420 A 2-phospho- IMCC3088_RS10640 pyruvate O-succinyl-L- 1-myristoylglycerol pyridoxamine lipid A biosynthesis IMCC3088_RS12535 isomerase: cpsB IMCC3088_RS04825 dehydrogenase a sulfurated α-D-galactosyluronate 6-(hydroxymethyl) glutathione a double stranded DNA methylbut-2-en- vernolate 2'-pentenyl)- -glycerol 3- lauroyl acyltransferase: α F6P 4'-phosphopantetheine ATP pyruvate dGTP 3-phosphate ATP + + 3-hydroxyacyl- D-glycerate dTDP- -D-glucose GDP-α-D- SAM 6 homoserine 5'-phosphate H RS04610 H lauroyl acyltransferase: : CMP uridine E2 protein] N - [sulfur carrier] putative pectinesterase -diketopiperazine glutathione S- DNA gyrase subunit A: 1-yl diphosphate 1-acyl-sn-glycerol- cyclopentane- phosphate [acp] dehydratase: IMCC3088_RS00810 mannose methionine- O-succinylhomoserine 4-hydroxy-3- 1-acyl-sn-glycerol- pyridoxamine 5'- IMCC3088_RS00810 Kdo - 2,3-bisphosphoglycerate- dTDP-glucose L-glutamine:D- met IMCC3088_RS07545 octanoyl-L-lysine lipoyl synthase: precursor: transferase: pantetheine-phosphate IMCC3088_RS03140 pyruvate kinase: epoxide hydrolase: 3-phosphate 1-octanoate IMCC3088_RS00920 2 lipid A biosynthesis -tRNA 5'-nucleotidase: sulfhydrylase: methylbut-2-en-1-yl 12-oxophytodienoate 3-phosphate phosphate oxidase: (palmitoleoyl) independent fructose-6-phosphate IMCC3088_RS14435 adenylyltransferase: DNA gyrase IMCC3088_RS07545 IMCC3088_RS05415 adenylyl cyclase: lipid A biosynthesis lauroyl acyltransferase: 4,6-dehydratase: ligase: metG an L-methionyl- pyruvate IMCC3088_RS04825 IMCC3088_RS01655a [pyruvate IMCC3088_RS13115 IMCC3088_RS05300 diphosphate synthase: acyltransferase: reductase: acyltransferase: IMCC3088_RS06915 a (2E)-oct- -lipid IV phosphoglycerate aminotransferase: Putative pectinesterase: IMCC3088_RS09390 subunit B: gyrB (9Z)-12,13- IMCC3088_RS10175 H + RS04425 H + lauroyl acyltransferase: A α-Kdo-(2->4)-IMCC3088_RS04685 IMCC3088_RS12530 [elongator an unsulfurated dehydrogenase 3-benzyl-3,6 -bis(glutathione)[+ 7 isozymes] 3'-dephospho- succinate L-homocysteine phosphoenol 2-C-methyl-D-IMCC3088_RS10580 1-myristoyl-2-IMCC3088_RS05405 IMCC3088_RS01715 a 2-acyl-1-alkyl-IMCC3088_RS05405 2-enoyl-[acp] mutase: IMCC3088_RS04565 Hormone Biosynthesis cytidine 5'-deoxyadenosine met IMCC3088_RS01950 a negatively dGDP dihydroxyoctadeca- IMCC3088_RS04685 α-Kdo-(2->6)- dTDP-4-dehydro- elongator tRNA Met ] [sulfur carrier] E2 protein] N 6 - 6-(hydroxymethyl) CoA pyruvate erythritol-2,4- palmitoleoyl 12-oxo-cis-10,15- sn-glycerol PLP cyclic-AMP IMCC3088_RS07340 α D-glucosamine Met supercoiled DNA 9-enoate octanoyl-[acyl-carrier- (lauroyl)-lipid IV 6-deoxy- -D- UDP-glucose biosynthesis tRNA Aromatic Compound Degradation -lipoyl-L-lysine methanol a homogalacturonan -diketopiperazine cyclodiphosphate phosphatidate phytodienoate 3-phosphate α-Kdo-(2->4)- A 3-phospho- 6-phosphate Respiration protein] reductase: (Kdo) -lipid myristoyl-acyl glucopyranose indole-3-acetate indole-3-acetate + + α 2 C1 Compound Utilization H RS04430 H IMCC3088_RS09665 -Kdo-(2->6)- A, cold adapted carrier protein D-glycerate dTDP-4- phosphoglucosamine D-glucopyranose biosynthesis III (bacteria) biosynthesis IV (bacteria) catechol degradation II (lauroyl)-lipid IV 2-oxoglutarate decarboxylation to succinyl-CoA 4-hydroxyacetophenone diphenyl ethers degradation and Assimilation A (ACP)-dependent phosphoglycerate dehydrorhamnose mutase: glmM 6-phosphate (meta-cleavage pathway) biphenyl degradation undecaprenyl-diphospho-N a cis-delta21-39- RNase II myristoyl-acyl phosphoglucomutase: indole-3- degradation glutathione glycyl-glycine an L-phenylalanyl- an N-terminal a sulfurated (indol-3- trans-dec-2- 1-palmitoylglycerol a nucleoside an octanoyl-[acp] acyltransferase: kinase: 3,5-epimerase: trp Lys -acetylmuramoyl-L-alanyl-γ- UDP-N-acetyl-α-D-glucosamine 4-hydroxyacetophenone coenzyme A degradation D-glucosamine a tRNA formaldehyde oxidation Phe cyanide yl)pyruvate oxo-40-methyl- enoyl-CoA repressor LexA carrier protein IMCC3088_RS09420 acetonitrile a [2-oxoglutarate [tRNA ] L-lysyl-[protein] [sulfur carrier] pyruvate dATP 3-phosphate diphosphate GTP + + IMCC3088_RS04685 IMCC3088_RS09245 IMCC3088_RS12540 lysine--tRNA ligase: catechol diphenyl ether II (glutathione-dependent) D-glutamyl-L-lysyl- D-alanine gamma- indolepyruvate C59:1-[acp] mRNA H RS02595 H (ACP)-dependent 1-phosphate dehydrogenase biphenyl 4-hydroxyacetophenone undecaprenyldiphospho- leucyl/phenylalanyl- thiosulfate 4-hydroxyacetophenone 1-acyl-sn-glycerol- nucleoside- 3-oxoacyl- α-D-Kdo-(2->4) dTDP-4-dehydro- alpha-D-glucose IMCC3088_RS10155 an L-lysyl- catechol 2,3- biphenyl 2,3- glutamyltransferase: ggt ferredoxin cyclopropane-fatty-acyl- enoyl-CoA hydratase: phosphatidylglycerol 13-DPG E2 protein] N 6 biphenyl 2,3- muramoylpentapeptide beta-N- tRNA--protein sulfurtransferase: monooxygenase: pyruvate kinase: 3-phosphate exoribonuclease II: repressor LexA: : acyltransferase: α UDP-N- phosphate-specific Lys 4-hydroxyacetophenone diphosphate kinase: [acyl-carrier- - -D-Kdo- β-L-rhamnose indole-3-acetamide [tRNA ] 2-oxoglutarate dioxygenase: dioxygenase: dioxygenase: formaldehyde gamma- oxidoreductase: IMCC3088_RS07545 phospholipid synthase: IMCC3088_RS00065 acyltransferase: IMCC3088_RS04685 biosynthesis I (plastidic) acetylglucosamine phosphoglucomutase: indole-3-acetamide -lipoyl-L-lysine monooxygenase: acetylglucosaminyltransferase: transferase: IMCC3088_RS10030 IMCC3088_RS12780 IMCC3088_RS06975 IMCC3088_RS12095 IMCC3088_RS10595 IMCC3088_RS01335 protein] (2->6)-lipid A lys dehydrogenase IMCC3088_RS04115 IMCC3088_RS11175 an unsulfurated IMCC3088_RS13895 IMCC3088_RS04455 (S)-3- + + α-D-Kdo-(2->4) glyceraldehyde dTDP-4- 2-oxoglutarate IMCC3088_RS11175 IMCC3088_RS12780 ditrans,octacis-undecaprenyldiphospho-IMCC3088_RS06065 glutamyltransferase: IMCC3088_RS04930 thiocyanate phosphoenol 1-palmitoyl-IMCC3088_RS05405 [+ 2 isozymes] H RS04420 H reductase: diphosphorylase/ IMCC3088_RS00295 amidase: amidase: subunit E1: HMS L-phenylalanyl- [sulfur carrier] 4-hydroxyphenylacetate S-2-(indol-3 dADP a cis-keto-C60- hydroxydecanoyl- a nucleoside 5'- cleaved a nucleoside α DHAP 3-phosphate dehydrorhamnose α-D-glucopyranose dehydrogenase biphenyl 2,3- IMCC3088_RS10140 Phe pyruvate fabG - -D-Kdo- glucosamine-1- biphenyl 2,3- 4-hydroxyphenylacetate S-(hydroxymethyl) UDP N-acetyl-(N-acetylglucosaminyl)muramoyl- γ-L-glutamyl- a tRNA yl)acetyl-CoA 2-myristoyl monophosphate triphosphate c-di-GMP NAD(P)H-dependent triose-phosphate dehydrogenase: reductase: 1-phosphate IMCC3088_RS09180 IMCC3088_RS09180 subunit E1: IMCC3088_RS11565 dioxygenase: γ L-cysteinyl-glycine L-lysyl-[protein] meroacyl-[acp] CoA repressor LexA (2->6)-lipid A phosphate N- 2-hydroxymuconate dioxygenase: glutathione L-alanyl- -D-glutamyl-L-lysyl-D-alanine glycylglycine phosphatidate [+ 2 isozymes] glycerol-3-phosphate isomerase: gapA IMCC3088_RS12545 amidase: amidase: IMCC3088_RS11565 IMCC3088_RS11420 4-hydroxyphenylacetate (1S,2S)-3-IMCC3088_RS11420 acetate acetate β acetyltransferase: UTP--glucose- 6-semialdehyde cis-3- a 3-oxodecanoyl- dehydrogenase: long-chain fatty IMCC3088_RS01460 D-glyceraldehyde dTDP- -L- IMCC3088_RS01860 IMCC3088_RS01860 hydrolase: phenoxycyclohexa- S-(hydroxymethyl) DHAP glmU 1-phosphate his dihydrolipoyl dehydrogenase: phenylcyclohexa- RS02805 [acp] IMCC3088_RS12220 acid activation 3-phosphate rhamnose histidine--tRNA ligase: IMCC3088_RS11960 3,5-diene-1,2-diol glutathione decaprenyl-diphospho-N- UDP-N-acetyl- di-trans,octa-cis a [pyruvate dehydrogenase 2-cis,6-trans N-acetyl-α-D- uridylyltransferase: indole-3-acetate dehydrogenase: IMCC3088_RS04110 3,5-diene-1,2-diol 10 + 1-[18-hydroxyoleyl]- a [protein]- sn-glycerol indole-3-acetate a [2-oxoglutarate a [2-oxoglutarate UDP-N-acetyl- a (6S)-5- an N - 6 FMNH NAD a uridine in tRNA 1-palmitoylglycerol histidinol a cation a cation IMCC3088_RS10575 dehydrogenase: α -undecaprenyl E2 protein] N - 2 3-methylcatechol 3-oxoacyl-ACP a long-chain glucosamine IMCC3088_RS00430 an L-histidyl- IMCC3088_RS11555 (2Z,4E)-2- cis-3-phenylcyclohexa- benzene-1,4-diol cis-3-phenoxycyclohexa- acetylmuramoyl-pentapeptide -D-glucosamine α-D-glucosamine Glu phe a phe 2-lyso-phosphatidate 3-phosphate ,10-trans- L-histidine 3-phosphate His dehydrogenase dehydrogenase IMCC3088_RS07020 formyltetrahydrofolate formyltetrahydrofolate palmitoleate biosynthesis I [tRNA ] hydroxyhexa- 3,5-diene-1,2-diol 3,5-diene-1,2-diol undecaprenyldiphospho- phosphate phenylalanine-4- phenylalanine-4- dihydrolipoyl-L-lysine NADH-FMN 1-acyl-sn-glycerol- tRNA dihydrouridine 1-acyl-sn-glycerol- catechol 2,3- geranylgeranyl : histidinol reductase: fatty acid 1-phosphate α His 6 6 undecaprenyl- dihydrofolate synthase/ (from (5Z)-dodec-5-enoate) glycerol-3-phosphate long-chain-fatty- UDP- -D-glucose a tRNA E2 protein] N E2 protein] N -S- 2,4-dienedioate dehydrogenase: S-(hydroxymethyl) muramoylpentapeptide beta-N- dihydrolipoyl oxidoreductase: 3-phosphate synthase DusC: diphosphate IMCC3088_RS04060 fructose-1,6- UDP-N- dehydrogenase: phosphate alpha-N- folylpolyglutamate hydroxylase - Long: hydroxylase - Long: 3-phosphate dioxygenase: IMCC3088_RS14150 dehydrogenase: acyltransferase: acid--CoA ligase: -dihydrolipoyl- succinyldihydrolipoyl- 4-oxalocrotonate IMCC3088_RS08465 glutathione acetylglucosaminyltransferase: dehydrogenase: IMCC3088_RS04795 acyltransferase: IMCC3088_RS13620 : [+ 12 isozymes] bisphosphate aldolase: IMCC3088_RS08465 acetylglucosaminyl 1- synthase: IMCC3088_RS01825 IMCC3088_RS01825 acyltransferase: IMCC3088_RS04115 [+ 5 isozymes] IMCC3088_RS14295 a (5Z)-dodec- acetylglucosamine L-lysine L-lysine 10 IMCC3088_RS11555 IMCC3088_RS12225 IMCC3088_RS05520 PRPP biosynthesis I tautomerase: diphenyl dehydrogenase: IMCC3088_RS06065 4a-hydroxy-N - 6,7- [+ 3 isozymes] IMCC3088_RS05405 [+ 2 isozymes] IMCC3088_RS05405 cis,cis-2-hydroxy- IMCC3088_RS11190 a [protein]- a (3R)-3- 5-enoyl-[acp] a 1-acyl-sn IMCC3088_RS09240 diphosphorylase/ (2Z,4E)-4-hydroxy-6- decaprenyl-pyrophosphoryl- phosphate transferase: IMCC3088_RS05320 tyr tyr a [pyruvate dehydrogenase 1-[18-hydroxyoeoyl]-2- a 5,6-dihydrouridine 1-palmitoyl-2- [+ 15 isozymes] IMCC3088_RS04200 biphenyl-2,3-diol IMCC3088_RS09135 a (6S)-5- formyltetrahydrofolate dihydrobiopterin + 6-oxohepta- N-phospho- his hydroxydecanoyl- beta-ketoacyl-[acyl- a long-chain glucosamine-1- ether 2,3-diol UDP (N-acetylglucosamine)-N- IMCC3088_RS14470 6 H NADH FMN [18-hydroxy-lioleoyl]-sn palmitoleoyl -glycerol 3- D-ribose 5- glycine--tRNA oxohexa-2,4-dienoate formyltetrahydrofolate E2 protein] N -lipoyl-L-lysine in tRNA 2,4-dienoate 15-cis-phytoene L-histidine [acp] carrier-protein] fatty acyl-CoA phosphate N- (3E)-2-oxohex- biphenyl ether-2,3- acetylmuramyl-(pentapeptide) UMP lipid I -glycerol 3-phosphate phosphatidate phosphate phosphate ligase subunit beta: biphenyl-2,3-diol 4-hydroxymuconic- S-formylglutathione 3-hydroxydecanoyl- synthase I: 1-acyl-sn-glycerol- ribose-phosphate acetyltransferase: Pentose Phosphate Pathways dihydrolipoamide 3-enedioate 1,2-dioxygenase: diol 1,2-dioxygenase: [acp] dehydrase: IMCC3088_RS00415 fructose 1,6- pyrophosphokinase: IMCC3088_RS04675 semialdehyde 3-phosphate bisphosphate glmU succinyltransferase: 4-oxalocrotonate IMCC3088_RS11420 dehydrogenase: IMCC3088_RS11420 S-formylglutathione IMCC3088_RS00420 beta-ketoacyl synthase: IMCC3088_RS11130 glycine--tRNA pentose phosphate pathway (non-oxidative branch) IMCC3088_RS11560 decarboxylase: 2-hydroxy-6-oxo- (2Z,4E)-2- hydrolase: a [procollagen]- a [protein]-L- acyltransferase: fructose- UDP-N-acetyl- gly IMCC3088_RS04110 1-myristoylglycerol glutathione 4-hydroxy-2-nonenal 2-oxoglutarate L-erythro-5,6,7,8- glutathione RX a nucleoside 1-palmitoylglycerol a 1-phosphatidyl- [DNA] propionamide acetamide 3-hydroxyacyl- a (7Z)-3- IMCC3088_RS00975 PRPP α ligase subunit alpha: IMCC3088_RS04100 6-phenylhexa- hydroxy-6-oxo- IMCC3088_RS07025 glutathione hypoglycin A a palmitoleoyl-[acp] a tetrahydrobiopterin phe phe ω IMCC3088_RS05405 cyclopropane fatty acid -D-glucosamine 2-oxoglutarate 3-phosphate L-proline tetrahydrobiopterin triphosphate proline ( = 180) 3-phosphate 1D-myo-inositol [acp] dehydratase: oxotetradec- a 1,2-diacyl- bisphosphatase: IMCC3088_RS04680 D-ribulose 2,4-dienoate 6-phenoxyhexa- glutathione S- prolyl 4-hydroxylase glutathione S- Peptidyl-prolyl cis- 1-acyl-sn-glycerol- DNA polymerase: amidase: amidase: (CFA) biosynthesis Gly dehydrogenase 2-oxopent- 2-maleylacetate S-formylglutathione gamma- 1-acyl-sn-glycerol- phenylalanine-4- phenylalanine-4- nucleoside triphosphate phosphatidylinositol 7-enoyl-[acp] sn-glycerol IMCC3088_RS06475 a glycyl-[tRNA ] 5-phosphate 2,4-dienoate transferase: subunit alpha: transferase: trans isomerase ppiD: IMCC3088_RS05465 IMCC3088_RS09180 IMCC3088_RS01860 IMCC3088_RS00920 subunit E1: 4-enoate hydrolase: glutamyltransferase: ggt 3-phosphate hydroxylase - Long: hydroxylase - Long: pyrophosphohydrolase: 3-phosphate kinase: 3-oxoacyl-ACP 3-phosphate a [phospholipid] a tRNA Gly maleylacetate IMCC3088_RS13115 IMCC3088_RS10655 IMCC3088_RS13115 IMCC3088_RS05135 a (2E)-dec- F6P IMCC3088_RS11565 2-keto-4-pentenoate IMCC3088_RS09130 gamma-glutamyltransferase: acyltransferase: a [procollagen] IMCC3088_RS01825 IMCC3088_RS01825 IMCC3088_RS02440 acyltransferase: IMCC3088_RS06700 DNA polymerase IV: amidase: amidase: reductase: phosphatidate olefinic fatty acidcyclopropane-fatty-acyl- ribose-5-phosphate ribulose-phosphate reductase: [+ 7 isozymes] 4α-hydroxy- 4α-hydroxy- [+ 7 isozymes] [+ 6 isozymes] IMCC3088_RS05405 a 1-phosphatidyl- IMCC3088_RS01500 IMCC3088_RS01860 IMCC3088_RS09180 2-enoyl-[acp] UDP-D-galactose biosynthesis hydratase: 2,6-dioxo-6- IMCC3088_RS10140 IMCC3088_RS054051-myristoyl-2- 4-hydroxy-2-nonenal- succinate trans 4-hyroxy- tyr tyr a glutathione- a nucleoside 5'- a [protein]-L- 1-palmitoyl-2- IMCC3088_RS05005 cytidylyltransferase: phospholipid synthase: glucose-6-phosphate isomerase: 3-epimerase: IMCC3088_RS04110 2-pyrone-6- formate tetrahydrobiopterin tetrahydrobiopterin HX 1D-myo-inositol a nucleoside 5'- propanoate acetate IMCC3088_RS11435 phenylhexa- phenol L-cysteinyl-glycine hypoglycin B acyl-carrier protein palmitoleoyl glutathione conjugate L-proline S-conjugate monophosphate proline (ω = 0) cis-vaccenoyl decanoyl-[acyl-carrier- [+ 10 isozymes] IMCC3088_RS00890 IMCC3088_RS04455 isomerase: α IMCC3088_RS07400 IMCC3088_RS01245 carboxylate 4-phosphate monophosphate a [phospholipid] fatty acid UDP- -D-glucose 2-oxopent-4- 3-enoate 3-oxoadipate phosphatidate phosphatidate protein] reductase: a (3R,7Z)-3- a CDP- IMCC3088_RS10640 containing cyclopropane UDP-glucose 4-epimerase: methionine- ribulose-phosphate enoate hydratase: 2-hydroxy-6-oxo- IMCC3088_RS09665 hydroxytetradec- diacylglycerol D-glucopyranose met D-ribose 5- IMCC3088_RS10310 -tRNA 3-epimerase: IMCC3088_RS04105 6-phenyl-2,4- 7-enoyl-[acp] 6-phosphate UDP-α-D-galactose phosphate Aldehyde Degradation an N 10 - 1-cis- an oxidized a single- 2-carboxymethyl-3- an insertion sequence (7Z)- 7 CDP-diacylglycerol-- ligase: metG IMCC3088_RS03580 1-myristoylglycerol a decanoyl-[acp] 3-hydroxy cis ∆ an L-methionyl- 4-hydroxy-2- hexadienoate AICAR a palmitoleoyl-[acp] vaccenoylglycerol- ferredoxin [iron- NADPH a peptide 2-hydroxyisobutyramide 3-methylcatechol mutated tRNA pyrazinamide DNA with lesion glycerol-3-phosphate 3- Met formyltetrahydrofolate stranded RNA hydroxyphenylpropanoyl-CoA element IS30 hexadecenoyl-CoA 3-phosphate -tetradecenoyl- [initiator tRNA ] oxopentanoate hydrolase: deethylsimazine bifunctional 3-phosphate sulfur] cluster polyribonucleotide amidase: acyl-CoA amidase: excinuclease Met D-xylulose 1-acyl-sn-glycerol- ferredoxin--NADP(+) Xaa-Pro : 1-acyl-sn-glycerol- catechol 2,3- 3-oxoacyl- [acp] dehydratase: phosphatidyltransferase: initiator tRNA IMCC3088_RS11430 parathion degradation degradation degradation I : enoyl-CoA hydratase: 5-phosphate 4-hydroxy-2- phosphoribosylaminoimidazolecarboxamide 3-phosphate reductase: aminopeptidase: IMCC3088_RS09180 IMCC3088_RS13110 dehydrogenase: 3-phosphate dioxygenase: exoribonuclease II: IMCC3088_RS09180 ABC subunit [acyl-carrier- IMCC3088_RS00920 IMCC3088_RS05590 2-oxopent- IMCC3088_RS08580 IMCC3088_RS00065 oxovalerate aldolase: benzoate formyltransferase/inosine acyltransferase: IMCC3088_RS02095 IMCC3088_RS07640 amidase: [+ 10 isozymes] IMCC3088_RS05425 acyltransferase: IMCC3088_RS04115 IMCC3088_RS06975 amidase: C: uvrC protein] 1-(3-sn- superpathway of guanosine Nucleoside and Nucleotide Biosynthesis transketolase: 4-enoate deethylsimazine a reduced a nucleoside a single- ∆ 3 ∆ 7 parathion methylglyoxal monophosphate cyclohydrolase: purH + + a proteinogenic IMCC3088_RS01860 an insertion [+ 29 isozymes] 2-hydroxy- IMCC3088_RS01860 [+ 2 isozymes] a trans- -cis- - phosphatidyl) superpathway of adenosine pyrimidine deoxyribonucleotides de novo biosynthesis I 5-aminoimidazole IMCC3088_RS11445 N-ethylammeline IMCC3088_RS054051-cis-vaccenoyl- H NADP ferredoxin [iron- (E)-2- a peptide IMCC3088_RS05405 reductase: de novo biosynthesis I IMCC3088_RS09255 : diphosphate stranded RNA amino acid sequence IS30 with (2E,7Z)- dimyristoyl 6-oxohepta- a nucleoside 5'- pyrazine-2- DNA without tetradecenoyl-[acp] -sn-glycerol nucleotides de novo biosynthesis I ribonucleotide biosynthesis II 4-hydroxy-2- chlorohydrolase: FAICAR a tetrahydrofolate acyl-carrier protein 2-palmitoleoyl sulfur] cluster benzylidenesuccinyl-CoA 2-hydroxyisobutanoate fabG UDP CTP [+ 2 isozymes] IMCC3088_RS01105 integrated transposon hexadecenoyl-CoA phosphatidate 2,4-dienoate monophosphate carboxylate lesion cis-∆ 7 -tetradecenoyl- 3-phosphate oxovalerate aldolase: phosphotriesterase: IMCC3088_RS03145 (R)-S- phosphatidate [+ 2 isozymes] ribonucleotide- PRPP D-sedoheptulose D-glyceraldehyde a 3- [acp]:NAD+ phosphatidylglycerophosphatase IMP IMP asp IMCC3088_RS04190 IMCC3088_RS06545 N-ethylammeline lactoylglutathione oxidoreductase: A: IMCC3088_RS12625 diphosphate reductase amidophosphoribosyltransferase: 7-phosphate 3-phosphate oxododecanoyl- CDP acetaldehyde hydroxyacylglutathione a 5-(carboxymethoxy) uridine 955/2504/ a [protein]-L- IMCC3088_RS11500 subunit alpha: IMCC3088_RS05305 methylmalonate semialdehyde 1-palmitoylglycerol sn-glycerol (R)-4- 2-trans-tetradecenoyl-CoA 4-guanidinobutyramide palmitoleoyl-CoA (S)-dihydroorotate long chain an aromatic riboflavin [acp] an L-1- 5-phospho-β- 4-nitrophenol hydrolase: a palmitoleoyl-[acp] a stearoyl-[acp] β-alanine 34 IMP dehydrogenase: adenylosuccinate IMCC3088_RS00500 ribonucleotide- transaldolase: diethylthiophosphate 3-phosphate 3-phosphate phosphopantoate uridine in tRNA 2580 in 23S rRNA polyphosphate methionine amino acid 3-oxoacyl-ACP a (7Z)-tetradec- phosphatidyl- IMCC3088_RS10190 D-ribosylamine acetaldehyde IMCC3088_RS05055 methylmalonate- glycerol-3-phosphate tRNA (cmo5U34)- 23S rRNA amidase: acyl-CoA peptide-methionine bifunctional : ribonucleotide- diphosphate reductase IMCC3088_RS09080 1-acyl-sn-glycerol- phosphopantothenate enoyl-CoA hydratase: : aromatic amino acid reductase: 7-enoyl-[acp] sn-glycerol phosphoribosylamine- dehydrogenase semialdehyde acyltransferase: methyltransferase: pseudouridylate IMCC3088_RS09180 dehydrogenase: exopolyphosphatase: (R)-S-oxide reductase: kinase/FMN IMCC3088_RS06345 diphosphate subunit alpha: N-ethylammelide (R)-lactate 3-phosphate synthase: IMCC3088_RS00065 IMCC3088_RS08485 aminotransferase: IMCC3088_RS04060 -glycine ligase: D-erythrose (acetylating): dehydrogenase (acylating) IMCC3088_RS12225 IMCC3088_RS11250 synthase C: amidase: IMCC3088_RS05425 IMCC3088_RS02910 IMCC3088_RS14060 adenylyltransferase: beta-ketoacyl synthase: fatty acid elongation -- saturated XMP reductase subunit beta: IMCC3088_RS00500 F6P acyltransferase: 1-stearoyl- IMCC3088_RS09415 IMCC3088_RS11245 [+ 12 isozymes] IMCC3088_RS03540 4-phosphate IMCC3088_RS04185 : IMCC3088_RS12065 (R)-4'- IMCC3088_RS05240 IMCC3088_RS01860 [+ 29 isozymes] a protein-L- IMCC3088_RS05860 IMCC3088_RS00975 adenylo-succinate IMCC3088_RS00495 D-lactate IMCC3088_RS054051-palmitoyl-2- acyl-carrier protein sn-glycerol a 5-(methoxycarbonylmethoxy) (S)-3- 955/ N-carbamoyl- an aromatic a (3R)-3- ribonucleotide- + a pseudouridine (2E,9Z)- long chain H NADH hydrogencarbonate propanoyl-CoA phosphopantothenate 34 4-guanidinobutanoate methionine- FMN [+ 2 isozymes] GMP synthetase: guaA dUDP diphosphate transketolase: acetyl-CoA diethylphosphate dehydrogenase: acyl-carrier protein palmitoleoyl 3-phosphate uridine in tRNA hydroxytetradecanoyl-CoA 2504/2580 in 23S rRNA hexadecenoyl-CoA L-aspartate polyphosphate 2-oxo-acid hydroxydodecanoyl- a (9Z)-3- adenylosuccinate lyase: superpathway of pyrimidine deoxyribonucleoside salvage GAR glyoxylate cycle (R)-S-oxide an acetoacetyl-[acp] GMP synthase: reductase subunit beta: IMCC3088_RS09255 IMCC3088_RS11985 phosphatidate [acp] oxohexadec- IMCC3088_RS04880 nucleoside- (3R)-3- IMCC3088_RS01110 IMCC3088_RS00495 phosphoribosylglycinamide [+ 2 isozymes] 9-enoyl-[acp] diphosphate kinase: 2'-deoxycytidine pyruvate hydroxydodecanoyl- formyltransferase 2: purT D-glyceraldehyde succinate a 3-methyl-branched a 1-long-chain (S)-3- a [protein]- 3-oxoacyl-ACP IMCC3088_RS10595 dCDP acetyl-CoA glyoxylate DNA combined with a 2,3,4-saturated uridine 2457 a monocarboxylic (7Z)- a [protein]-L- phosphatidylglycerophosphate a long-chain carbamoyl NAD + NADPH [acyl-carrier protein] GMP AMP 2'-: 3-phosphate exogenous DNA to form 2,3,4-saturated 2-oxoglutarate CTP 1,2-diacyl-sn- acyl-glycerone asp hydroxyhexadecanoyl- acid amide tetradecenoyl-CoA trp L-tyrosine reductase: dUTP nucleoside- FGAR chlorinated phenols degradation (1-octadecenoyl(9Z), 2-palmitoyl) fatty phosphate in 23S rRNA methionine dehydratase: IMCC3088_RS08560 isocitrate lyase: malate synthase G: a recombinational junction fatty acyl-CoA phytanoyl-CoA glycerol 3-phosphate 3-phosphate alkylglycerone- CoA ribosomal large amidase: acyl-CoA NAD(P)(+) phosphate IMCC3088_RS04060 diphosphate kinase: crossover junction phosphatidate aspartate peptide-methionine aromatic amino acid protein-tyrosine- IMCC3088_RS00420 a 3-oxoacyl-[acp] dUTP diphosphatase: IMCC3088_RS10535 IMCC3088_RS06145 phosphatidylglycerophosphatase dioxygenase: phosphate synthase: enoyl-CoA hydratase: subunit pseudouridine IMCC3088_RS09180 dehydrogenase: transhydrogenase: [+ 12 isozymes] guanylate kinase: : IMCC3088_RS10595 2'-deoxyuridine phosphoribosylformylglycinamidine 3-chlorophenol cytidylyltransferase: carbamoyltransferase: (S)-S-oxide reductase: aminotransferase: phosphatase: 3-hydroxyacyl- a (3R,9Z)-3- IMCC3088_RS06550 dCMP A: IMCC3088_RS12625 IMCC3088_RS10910 IMCC3088_RS06615 IMCC3088_RS00065 synthase E: amidase: IMCC3088_RS05425 IMCC3088_RS02595 IMCC3088_RS12830 IMCC3088_RS02435 synthase: IMCC3088_RS10625 RuvC: IMCC3088_RS00630 a 2-hydroxy-3-methyl- IMCC3088_RS00890 a 1-alkyl- IMCC3088_RS05845 IMCC3088_RS03235 IMCC3088_RS11245 IMCC3088_RS00465 [acp] dehydratase: hydroxyhexadec- nucleoside triphosphate dCTP succinate branched 2,3,4- a CDP-2,3,4-saturated- a long-chain glycerone 3- N-carbamoyl- IMCC3088_RS04900 IMCC3088_RS01860 [+ 29 isozymes] [+ 3 isozymes] a protein-L- : : 1-oleoyl-2-palmitoyl- resolution of recombinational[+ 2 isozymes] trans-hexadec- a pseudouridine 2457 (2E,7Z)- (indol-3- a [protein]- IMCC3088_RS00920 9-enoyl-[acp] pyrophosphohydrolase: diacylglycerol fatty acid L-aspartate a monocarboxylate NADP + NADH methionine- IMCC3088_RS13575 IMCC3088_RS03115 FGAM phosphatidylglycerol junction formation saturated fatty acyl-CoA phosphate 2-enoyl-CoA in 23S rRNA tetradecenoyl-CoA yl)pyruvate L-tyrosine 3-hydroxy cis ∆ 9 3-oxoacyl-ACP GDP ADP IMCC3088_RS02440 2-chlorophenol (S)-S-oxide a (2E)-dodec- beta-ketoacyl-[acyl- thymidine kinase: thymidine dCDP D-threo-isocitrate (S)-malate phenol hydroxylase: phenol hydroxylase: of two intact strands -hexadecenoyl- reductase: phosphoribosylformylglycinamidine 2-enoyl-[acp] carrier-protein] dUMP IMCC3088_RS09170 IMCC3088_RS04125 IMCC3088_RS04125 4-chlorophenol [acp] dehydratase: IMCC3088_RS05005 nucleoside- cyclo-ligase: IMCC3088_RS00740 phenol hydroxylase: synthase I: thymidylate synthase: UTP and CTP de thymidine kinase: [+ 3 isozymes] [+ 3 isozymes] γ a reduced a peptide with a long-linear (3S)- dodecanoyl-[acyl- IMCC3088_RS00920 [+ 12 isozymes] nucleoside- ribonucleotide- ATP ribonucleotide- dUMP diphosphate kinase: aconitate hydratase B: malate dehydrogenase: IMCC3088_RS04125 phenol hydroxylase: α L-alanyl- -D-glutamyl-meso- 3-hydroxy- MoO - cis-vaccenoyl-CoA (5Z)- a phenol sulfate a (2E,9Z)- IMCC3088_RS00415 IMCC3088_RS07595 novo biosynthesis IMCC3088_RS13575 UDP-N-acetyl- -D-muramate electron-transfer UQ an N-terminal α-D-glucan carboxynorspermidine sn-glycerol 3-phosphate 2 hydroxyadipyl- ala ser carrier-protein] diphosphate kinase: synthase: diphosphate reductase IMCC3088_RS10595 AIR IMCC3088_RS04125 2,6-diaminopimeloyl-D-alanine molybdopterin ATP dodecenoyl-CoA diphosphate reductase IMCC3088_RS05280 IMCC3088_RS09885 [+ 3 isozymes] L-kynurenine glycogen CoA acyl-CoA acyl-CoA : reductase: hexadeca-2,9- beta-ketoacyl synthase: a (3R)-3- IMCC3088_RS10595 fliI subunit alpha: dTMP UMP thymidine kinase: UDP-N-acetylmuramate:L- flavoprotein electron transfer Xaa-L-proline carboxynorspermidine glycerol-3-phosphate cofactor a 2,3,4-saturated subunit alpha: thymidylate synthase: dCTP [+ 3 isozymes] leucyl aminopeptidase: kynureninase: phosphorylase: molybdenum cofactor dehydrogenase: dehydrogenase: IMCC3088_RS13570 serine/threonine IMCC3088_RS09665 dienoyl-[acp] IMCC3088_RS00975 hydroxyacyl-[acyl- [+ 8 isozymes] IMCC3088_RS00500 UMP kinase: IMCC3088_RS09170 Alcohol Degradation alanyl-gamma-D-glutamyl- flavoprotein-ubiquinone decarboxylase: acyltransferase: enoyl-CoA hydratase: alanine transaminase: fatty acyl-[acp] IMCC3088_RS00500 dTMP kinase: IMCC3088_RS07595 a peptide with IMCC3088_RS02645 IMCC3088_RS06520 IMCC3088_RS00305 guanylyltransferase: IMCC3088_RS05425 IMCC3088_RS05425 dehydratase: palmitoleoyl- carrier protein] IMCC3088_RS00875 3-chlorocatechol 4-chlorocatechol meso-diaminopimelate oxidoreductase: a proteinogenic α-D- IMCC3088_RS06875 IMCC3088_RS12225 IMCC3088_RS00065 sulfatase: IMCC3088_RS02285 a dodecanoyl-[acp] [acp]:NAD+ 3-hydroxyacyl- ribonucleotide- ribonucleotide- IMCC3088_RS05185 cis-aconitate acetyl-CoA oxaloacetate an N-terminal ala 3-hydroxyanthranilate a long-linear adenylyl IMCC3088_RS02410 [+ 29 isozymes] [+ 29 isozymes] IMCC3088_RS10495 IMCC3088_RS01220 cytidylate kinase: ligase: IMCC3088_RS08510γ IMCC3088_RS05120 amino acid glucopyranose 1-[18-hydroxyoleyl]- [acp] dehydratase: GTP diphosphate diphosphate glycerol and glycerophosphodiester degradation UDP-N-acetylmuramoyl-L-alanyl- -D- an oxidized L-proline α-D-glucan norspermidine molybdenum trans-2,3- (2E,11Z)- (2E,5Z)- oxidoreductase: dTDP + a phenol pyruvate pyruvate IMCC3088_RS00920 ATP reductase subunit beta: IMCC3088_RS03115 aconitate hydratase B: glutamyl-meso-2,6-diaminopimeloyl-D-alanine H UQH electron-transfer 1-phosphate 2-lyso-phosphatidate cofactor dehydroadipyl-coA octadecenoyl-CoA dodecenoyl-CoA IMCC3088_RS09665 reductase subunit beta: UDP pyrimidine 2 IMCC3088_RS00495 nucleoside- CMP phosphorylation IMCC3088_RS05280 flavoprotein 3-oxoacyl- IMCC3088_RS00495 ribonucleosides salvage I citrate (Si)-synthase: a glycerophosphodiester a palmitoleoyl-[acp] diphosphate kinase: nucleoside- paraoxon degradation methyl parathion degradation [acyl-carrier- IMCC3088_RS10595 IMCC3088_RS00245 phenol degradation diphosphate kinase: dTMP cytidine CMP 1-stearoyl- (25S)-3- (11Z)-(S)-3- protein] type II citrate I (aerobic) glycerol icosapentaenoyl- an L-arginyl- an N-terminal L- 3S-(4-hydroxyphenyl)-3- (5Z)- 1-oleyl-2-lyso- laurate palmitoleoyl-[acp] dADP dTTP IMCC3088_RS10595 cytidylate kinase: glycerophosphoryl a palmitoyl-[acp] a malonyl-[acp] an oleoyl-[acp] sn-glycerol oxocholest- coenzyme A 3-hydroxyisovaleryl-CoA a [protein] Ser/Thr hydroxyhexadec- acetyl-CoA Ins(1)P (S)-malate reductase: dGDP dTMP kinase: paraoxon methyl parathion CoA Arg hydroxy-propanoyl-CoA tetradecenoyl-CoA phosphatidate IMCC3088_RS03115 citrate synthase: gltA diester [tRNA ] glutamyl-[protein] fabG : UTP IMCC3088_RS05185 phenol 3-oxoacyl-[acyl-carrier- 1-acyl-sn-glycerol-3-phosphate acyl-CoA thioesterase 4-en-26-oate acyl-CoA synthetase: serine/threonine 11-enoyl-CoA acyl-CoA acetyl-CoA 1-acyl-sn-glycerol- long-chain-fatty- a trans-2- CDP phosphotriesterase: phosphotriesterase: phosphodiesterase: : arginyltransferase: enoyl-CoA hydratase: enoyl-CoA hydratase: inositol fumarate hydratase: IMCC3088_RS09905 a 2,3,4-saturated nucleoside- nucleoside- protein] reductase: fabG 3-phosphate II: IMCC3088_RS07855 IMCC3088_RS05755 protein kinase: enoyl-CoA hydratase: dehydrogenase: acetyltransferase: 3-phosphate [+ 2 isozymes] acid--CoA ligase: enoyl-[acyl- CTP dTDP phenol hydroxylase: IMCC3088_RS06545 IMCC3088_RS06545 IMCC3088_RS06490 IMCC3088_RS02230 IMCC3088_RS04925 IMCC3088_RS00065 IMCC3088_RS00065 monophosphatase: IMCC3088_RS05835 fatty acyl-[acp] diphosphate kinase: diphosphate kinase: uridine CMP nucleoside- IMCC3088_RS04125 diethylphosphate 4-nitrophenol 4-nitrophenol dimethylthiophosphate [+ 2 isozymes] acyltransferase: [+ 2 isozymes] an N-terminal (25S)-3- [+ 3 isozymes] IMCC3088_RS06190 IMCC3088_RS00065 IMCC3088_RS05425 IMCC3088_RS06510 acyltransferase: IMCC3088_RS11970 palmitoleate carrier protein] synthetase: pyrG Arg IMCC3088_RS10610 IMCC3088_RS10595 IMCC3088_RS10595 nucleoside- diphosphate kinase: [+ 3 isozymes] IMCC3088_RS05405 coenzyme A icosapentaenoate L-arginiyl-L- a tRNA oxocholest-4- (E)-2- a [protein] (L-serine/L- [+ 29 isozymes] [+ 8 isozymes] IMCC3088_RS05405 a 3-oxotetradecanoyl- [+ 15 isozymes] CTP : sn-glycerol acyl-carrier protein a 3-oxooctadecanoyl-[acp] 1-stearoyl-2- 4-coumaroyl-CoA (2E,11Z)-hexadec- (2E,5Z)- dioleoyl fumarate 2,3,4-saturated fatty diphosphate kinase: IMCC3088_RS10595 catechol glutamyl-[protein] en-26-oyl-CoA methylcrotonoyl-CoA threonine) phosphate acetoacetyl-CoA myo-inositol [acp] IMCC3088_RS08740 3-phosphate acyl-carrier protein oleoyl-sn-glycerol 2,11-dienoyl-CoA tetradecenoyl-CoA phosphatidate lauroyl-CoA acyl-[acp]:NAD+ dGTP dATP IMCC3088_RS10595 CTP UMP 3-phosphate 3-oxoacyl-ACP oxidoreductase: dTTP glycerol-3-phosphate reductase: IMCC3088_RS09665 dehydrogenase: an N-formyl-L- a (1->4)- IMCC3088_RS04060 IMCC3088_RS06620 1-myristoylglycerol an L-arginyl- an N-terminal L- a c-type an acyl-[acyl-carrier protein] a malonyl-[acp] a myristoyl-[acp] methionylaminoacyl- O-ureidohomoserine asp α-D-glucan agmatine met oleoyl-CoA D-threo-isocitrate thr Ins(2)P thiosulfate [+ 12 isozymes] [tRNA Arg ] 3-phosphate tRNA aspartyl-[protein] glycogen cytochrome acyl-CoA isocitrate a (3R)-3- DHAP 3-oxoacyl-[acyl-carrier- 1-acyl-sn-glycerol- peptide deformylase: arginyltransferase: argininosuccinate Cytochrome c heme inositol thiosulfate phosphatidylglycerol phosphorylase: agmatine deiminase: aromatic amino acid dehydrogenase: dehydrogenase serine/threonine hydroxytetradecanoyl- protein] reductase: fabG 3-phosphate IMCC3088_RS04715 IMCC3088_RS04925 synthase: lyase subunit CcmH: monophosphatase: sulfurtransferase: stearate biosynthesis biosynthesis II (non-plastidic) phosphatidylcholine biosynthesis V an N-terminal IMCC3088_RS00305 IMCC3088_RS01815 aminotransferase: IMCC3088_RS05425 (NADP(+)): dehydratase: [acp] Inorganic Nutrient Metabolism [+ 2 isozymes] acyltransferase: a L-methionylaminoacyl- IMCC3088_RS08480 α-D- IMCC3088_RS09835 IMCC3088_RS10610 IMCC3088_RS10030 II (bacteria and plants) formate L-arginiyl-L- a tRNA Arg a (1->4)- an apo-[c-type IMCC3088_RS11245 IMCC3088_RS04905 IMCC3088_RS01220 (3R)-3-hydroxymyristoyl- DHAP acyl-carrier protein a 3-oxoacyl-[acp] IMCC3088_RS05405 tRNA canavaninosuccinate glucopyranose [+ 29 isozymes] an L-1- aspartyl-[protein] α-D-glucan cytochrome] N-carbamoylputrescine 2-oxo-4- (2E,9Z)- myo-inositol sulfite [acyl-carrier protein] NAD(P)H-dependent acyl-carrier protein dimyristoyl 1-phosphate 2-oxoglutarate 2-oxobutanoate a palmitoyl-[acp] phosphatidylethanolamine superpathway of sulfate assimilation and cysteine biosynthesis methylthiobutanoate octadecenoyl-CoA dehydratase: glycerol-3-phosphate phosphatidylethanolamine selenate reduction phosphatidate beta-ketoacyl-[acyl- IMCC3088_RS00920 dehydrogenase: N-methyltransferase: carrier-protein] IMCC3088_RS05395 3-phospho-D-glycerate a (2E)-tetradec- IMCC3088_RS12220 a phosphatidyl-N- selenate α (S)-3- synthase I: sn-glycerol a ring-opened 7- an (S)-2- orotidine 5'- N-acetyl- - sn-glycerol 2-enoyl-[acp] methylethanolamine 3-phosphoglycerate sulfate 3-sulfocatechol hydroxyhexanoyl- reduced riboflavin selenide methanol a RNA-DNA hybrid IMCC3088_RS00415 3-phosphate an acetyl-[acp] a malonyl-[acp] methylguanine in DNA halocarboxylate phosphate O-acetyl-L-serine thiosulfate 2-oxoglutarate D-ala D-muramoyl- 3-phosphate myristoyl-[acyl-carrier- phospholipid dehydrogenase: adenylyltransferase: DNA- haloacid dehalogenase: catechol 2,3- L-alanine(1-) CoA sulfite reductase: ribonuclease beta-ketoacyl synthase: beta-ketoacyl synthase: orotate B: D-alanine N-acetylmuramoyl- selenide,water glycerol-3-phosphate protein] reductase: glycerol-3-phosphate methyltransferase: IMCC3088_RS05130 adenosine IMCC3088_RS020055'- formamidopyrimidine IMCC3088_RS05235 dioxygenase: IMCC3088_RS05095 catalase-peroxidase: HII: rnhB IMCC3088_RS00975 acyltransferase: IMCC3088_RS00975 phosphoribosyltransferase: IMCC3088_RS02450 aminotransferase: L-alanine amidase: enoyl-CoA hydratase: dikinase SelD: acyltransferase: IMCC3088_RS09665 a 3-oxooctadecanoyl- IMCC3088_RS05395 D-3-phosphoglycerate phosphoselenate glycosylase: [+ 2 isozymes] IMCC3088_RS04115 sulfite reductase: IMCC3088_RS00090 a nucleoside 5'- IMCC3088_RS12225 [+ 2 isozymes] an (R)-2- pyrE (2Z,4E)-2- IMCC3088_RS02755 IMCC3088_RS06385 IMCC3088_RS00065 IMCC3088_RS13345 IMCC3088_RS12225 DNA [acp] a phosphatidyl-N- dehydrogenase: IMCC3088_RS09395 a halide anion acetate S-sulfo-L-cysteine N-acetyl-D- IMCC3088_RS10825 monophosphate a 1-acyl-sn an acetoacetyl-[acp] acyl-carrier protein 2,6-diamino-4- hydroxyacid orotate PRPP sulfite hydroxyhexa- pyruvate D-glt ala trans-hex-2- 1-oleyl-2-lyso- a myristoyl-[acp] 3-oxoacyl-ACP dimethylethanolamine IMCC3088_RS04540 an apurinic site muramate selenophosphate formaldehyde -glycerol 3- hydroxy-5-(N-methyl) 2,4-dienedioate enoyl-CoA riboflavin phosphatidate reductase: phospholipid sulfoacetaldehyde degradation I within DNA 3-oxoacyl- phosphate formamidopyrimidine IMCC3088_RS04060 methyltransferase: 3-phospho-hydroxypyruvate selenite [acyl-carrier- 1-acyl-sn-glycerol- [+ 12 isozymes] 3-phosphate IMCC3088_RS05395 sulfoacetaldehyde protein] 3-phosphoserine/ 34 a 2,3,4- a (3R)-3- an [amino group carrier protein]-C- a linear malto- a 3-O-acetylated an apo-[LYS2 L- a guanine all-trans-3,4- a double-stranded a phosphate uridine reductase: acyltransferase: phosphohydroxythreonine a glutaryl-[acp] queuine uroporphyrinogen-I saturated (3R)-3- ethanol hydroxyoctadecanoyl- a phosphatidylcholine a malonyl-[acp] terminal-γ-(L-glutamyl)-L-glutamate oligosaccharide rhamnogalacturonan I 2-aminoadipyl- coenzyme A in tRNA didehydrolycopene oligonucleotide L-2-aminoadipate monoester fabG IMCC3088_RS05405 aminotransferase: sulfoacetaldehyde methyl ester glycogen rhamnogalacturonan hydroxyacyl-CoA [acp] a 1,2-diacyl- beta-ketoacyl synthase: carrier-protein] tRNA-guanine(34) alkaline phosphatase: uridine kinase: IMCC3088_RS03135 acetyltransferase: : phosphorylase: : holo-ACP synthase: carotenoid oxygenase: uroporphyrinogen oligoribonuclease: 2-aminoadipate catalase-peroxidase: [+ 2 isozymes] 3-hydroxyacyl- sn-glycerol selenodiglutathione IMCC3088_RS00975 transglycosylase: tgt enoyl-CoA hydratase: IMCC3088_RS06325 IMCC3088_RS08740 IMCC3088_RS00240 IMCC3088_RS09425 IMCC3088_RS00305 IMCC3088_RS01930 a holo-[LYS2 L- IMCC3088_RS02455 IMCC3088_RS02250 decarboxylase: hemE IMCC3088_RS06940 aminotransferase: IMCC3088_RS00090 [acp] dehydratase: 3-phosphate [+ 2 isozymes] α 34 IMCC3088_RS00065 a 3-oxohexadecanoyl- 3-phospho-L-serine -D-glucopyranose a linear malto- a rhamnogalacturonan 2-aminoadipyl- 3',5'-ADP a queuosine IMCC3088_RS00235 [+ 3 isozymes] UMP IMCC3088_RS00920 phosphatidate acyl-carrier protein a 3-oxopimeloyl- an [amino group carrier protein]- acetate guanine a nucleoside 5'- [acp] γ 1-phosphate oligosaccharide type I carrier-protein] in tRNA apo-4'-lycopenal coproporphyrinogen I an alcohol acetaldehyde a (2E)-octadec- cytidylyltransferase: sulfite [acp] methyl ester C-terminal- -(5-phospho- a cis-2-enoyl-CoA monophosphate 2-oxoadipate 3-oxoacyl-ACP phosphoserine acetyl phosphate 2-enoyl-[acp] IMCC3088_RS00890 L-glutamyl)-L-glutamate reductase: phosphatase: thrH glutathioselenol 2,3,4-saturated fatty a CDP- [+ 2 isozymes] phosphate IMCC3088_RS04060 a 2-O-acetylated (S)-3- acyl-[acp]:NAD+ diacylglycerol acetyltransferase: a malonyl-[acp] a plant soluble an L-arginyl- an N-terminal (2E,6E)-farnesyl a [glycerolipid]- a 5' triphospho- thiamine [+ 12 isozymes] a malonyl-[acp] sn-glycerol rhamnogalacturonan I citrate hydroxybutanoyl- NaMN 2-oxoglutarate CDP-diacylglycerol-- ser IMCC3088_RS00250 a myristoyl-[acp] heteroglycan Arg 3-sulfo-L- oleate [mRNA] a (3R)-3- oxidoreductase: methyl ester 3-phosphate glycogen rhamnogalacturonan [tRNA ] diphosphate phosphate glycerol-3-phosphate 3- beta-ketoacyl synthase: glycerol-3-phosphate alanyl-[protein] protoheme IX cyclopropane-fatty-acyl- RNA CoA alpha-ketoglutarate hydroxyhexadecanoyl- IMCC3088_RS09665 phosphorylase: acetylesterase: arginyltransferase: aconitate hydratase B: ribosome small subunit- 5'-nucleotidase: phosphatidyltransferase: serine hydrogen selenide acetyl-CoA IMCC3088_RS00975 acyltransferase: : phospholipid synthase: pyrophosphohydrolase: enoyl-CoA hydratase: decarboxylase: [acp] IMCC3088_RS00305 IMCC3088_RS01930 an N-terminal L- IMCC3088_RS04925 IMCC3088_RS05280 dependent GTPase: IMCC3088_RS04825 a stearoyl-[acp] IMCC3088_RS05590 acetyltransferase: [+ 2 isozymes] IMCC3088_RS12225 IMCC3088_RS10800 IMCC3088_RS04455 IMCC3088_RS07615 IMCC3088_RS00065 IMCC3088_RS08705 (3R)-3-hydroxypalmitoyl- α Arg IMCC3088_RS06945 a 3-oxoglutaryl- 1-myristoylglycerol -D-glucopyranose a plant soluble a rhamnogalacturonan arginiyl-3-sulfo- a tRNA [acyl-carrier protein] 1-(3-sn- IMCC3088_RS09760 acyl-carrier protein acyl-carrier protein acetate heme o a [phospholipid]- a 5'-phospho- β-D- succinate [acp] methyl ester 3-phosphate 1-phosphate heteroglycan type I L-alanyl-[protein] D-threo-isocitrate thiamine dehydratase: phosphatidyl) serine dihydrosterculate [mRNA] crotonyl-CoA ribosylnicotinate semialdehyde IMCC3088_RS00420 -sn-glycerol sulfate acetyltransferase: 3-hydroxyacyl- 3-phosphate IMCC3088_RS03325 sulfate an N-terminal 5-dehydro-4-deoxy- [acp] dehydratase: stearate phosphatidylglycerophosphatase adenylyltransferase: a [ribosomal protein sn-glycerol maltohexaose an L-arginyl- jasmonoyl-CoA H O (2E,9Z)- a ribonucleoside (2S)- (2R,3S)-3- phytanoyl-CoA 2-oxoglutarate 2 4-methylcatechol 3-ethylmalate O-acetyl-L-serine 89 a sulfurated [sulfur carrier] a palmitoyl-[acp] Arg 3-sulfino-L- D-glucuronate octadecenoyl-CoA ethylmalonyl-CoA isopropylmalate IMCC3088_RS00920 A: IMCC3088_RS12625 IMCC3088_RS02005 S12] L-aspartate 3-phosphate glycogen [tRNA ] 5'-monophosphate long-chain-fatty- an L-1- urea cycle ribosomal protein S12 glycerol-3-phosphate phytanoyl-CoA alanyl-[protein] acyl-CoA thioesterase 5-dehydro-4-deoxy-D- catechol 2,3- methylmalonyl- 3-isopropylmalate 3-isopropylmalate phosphorylase: arginyltransferase: enoyl-CoA hydratase: a (2E)-hexadec- acid--CoA ligase: phosphatidyl- APS methylthiotransferase: acyltransferase: dioxygenase: II: IMCC3088_RS07855 glucuronate isomerase: dioxygenase: 5'-nucleotidase: CoA epimerase: dehydrogenase: dehydrogenase: IMCC3088_RS00305 IMCC3088_RS04925 IMCC3088_RS00065 2-enoyl-[acp] IMCC3088_RS11970 sn-glycerol cysteine synthase B: rimO IMCC3088_RS12225 IMCC3088_RS10910 an N-terminal L- [+ 2 isozymes] IMCC3088_RS01915 IMCC3088_RS04115 IMCC3088_RS04825 IMCC3088_RS04855 IMCC3088_RS05360 IMCC3088_RS05360 ammonium a [ribosomal protein α-D-glucopyranose 2-hydroxyphytanoyl- Arg (+)-7-iso- palmitoyl-[acyl-carrier- [+ 15 isozymes] adenylyl-sulfate kinase: IMCC3088_RS02450 arg an unsulfurated 1-palmitoylglycerol maltopentaose succinate arginiyl-3-sulfino- a tRNA 3-deoxy-D-glycero- 2-hydroxy-5-methyl-6- (S)-3-hydroxy-(9Z) (2R)- 4-methyl-2- 5'-deoxyadenosine met S12]-3-methylsulfanyl- acyl-carrier protein 1-phosphate CoA jasmonate 2-oxovalerate acyl-CoA hydrolysis IMCC3088_RS02010 [sulfur carrier] 89 3-phosphate L-alanyl-[protein] 2,5-hexodiulosonate a ribonucleoside protein] reductase: stearoyl-CoA carbamoyl L-aspartate oxohexa-2,4-dienoate -octadecenoyl-CoA ethylmalonyl-CoA oxopentanoate IMCC3088_RS09665 phosphate a 2,3,4-saturated PAPS cys phosphatidylethanolamine argininosuccinate lyase: synthase a palmitoyl-[acp] fatty acyl CoAacyl-CoA thioesterase: IMCC3088_RS13370 L-4-hydroxyphenylglycine- dihomo γ- RNase II poly-A RNase G degradation biosynthesis I large a cis- sn-glycerol a maltodextrin maltotetraose a peptide with a H O 2-phosphoglycolate ethylphosphate isovaleryl-CoA cyclohexanone meso-tartrate L-arginyl-D-4- linolenoyl-CoA 2 substrate mRNA substrate mRNA IMCC3088_RS04510 subunit: carB vaccenoyl-[acp] 3-phosphate glycogen glycogen leader sequence hydroxyphenylglycine-L-seryl- glycerol-3-phosphate acyl-CoA thioesterase exoribonuclease II: phosphoglycolate isovaleryl-CoA cyclohexanone tartrate a CDP-diacylglycerol a 2,3,4-saturated[+ 2 isozymes] L-arginino- carbamoyl-phosphate phosphorylase: phosphorylase: signal peptidase I: ribonuclease E: alkaline phosphatase: CDP-diacylglycerol--serine L-ornithine L 4-hydroxyphenylglycinetrypsin: acyltransferase: II: IMCC3088_RS07855 IMCC3088_RS06975 phosphatase: dehydrogenase: monooxygenase: dehydrogenase: fatty acid sulfate reduction succinate synthase small subunit: IMCC3088_RS00305 IMCC3088_RS00305 IMCC3088_RS02475 IMCC3088_RS05245 IMCC3088_RS09195 IMCC3088_RS12225 [+ 2 isozymes] RNase II IMCC3088_RS03155 IMCC3088_RS01345 IMCC3088_RS08995 IMCC3088_RS11820 O-phosphatidyltransferase: III (assimilatory) IMCC3088_RS01420 IMCC3088_RS02600D-4-hydroxyphenylglycine- 1-cis- α-D-glucopyranose α-D-glucopyranose di-homo-γ- [+ 3 isozymes] palmitate IMCC3088_RS00710 L-4-hydroxyphenylglycine- a maltodextrin maltotriose a leader sequence a peptide AMP substrate with 3-methylcrotonyl- 2-hydroxy-3- a 3-sn-phosphatidyl- L-seryl-L 4- acyl-carrier protein vaccenoylglycerol- 1-phosphate 1-phosphate linolenate an mRNA fragment glycolate ε-caprolactone carbamoyl L-arginine no poly-A tail ethanol CoA oxosuccinate L-serine sulfate hydroxyphenylglycine 3-phosphate long-chain-fatty- ornithine phosphate acid--CoA ligase: phosphatidylserine sulfate argininosuccinate superpathway of L- Amino Acid Biosynthesis adenylyltransferase: carbamoyltransferase: IMCC3088_RS11970 decarboxylase: L-histidine biosynthesis superpathway of branched chain amino acid biosynthesis L-arginine biosynthesis I (via L-ornithine) L-arginine biosynthesis II (acetyl cycle) synthase: 3-[(3aS,4S,7aS)-7a-methyl- an adenosine 34 4,4'-dihydroxy-3,3'- isoleucine biosynthesis I L-lysine biosynthesis I IMCC3088_RS02005 IMCC3088_RS00505 adenine 2503 in 23S rRNA maltopentaose 4-hydroxybutanoate acetyl-CoA N-acetyl- wound RNA δ-carotene (R)-lactate [+ 15 isozymes] IMCC3088_RS06950 IMCC3088_RS08480 1,5-dioxo-octahydro-1H coenzyme A VibB coenzyme A a tRNA precursor a protein in [tRNA Arg2 ] dimethoxystilbene APS L-citrulline 23S rRNA (adenine(2503) -inden-4-yl]propanoate glycogen 4-hydroxybutyrate L-citrulline an L-1- acyl-CoA synthetase: ribonuclease D: acetylornithine tRNA-specific lignostilbene alpha- glyoxalase: palmitoyl-CoA oxaloacetate PRPP pyruvate thr Glu N-acetylglutamyl-phosphate -C(2))-methyltransferase phosphorylase: CoA-transferase: holo-ACP synthase: thimet oligopeptidase: RNA : lycopene beta-cyclase: phosphatidylethanolamine asp bifunctional phosphoadenylylsulfate IMCC3088_RS05755 IMCC3088_RS13040 deacetylase: : beta-dioxygenase: IMCC3088_RS07970 aspartate N-acetylglutamylphosphate RlmN: IMCC3088_RS10590 IMCC3088_RS00305 IMCC3088_RS08195 IMCC3088_RS02455 IMCC3088_RS10305 IMCC3088_RS13900 IMCC3088_RS11195 ATP acetolactate synthase, : ornithine reductase: 3-[(3aS,4S,7aS)-7a-methyl-[+ 3 isozymes] α a holo-[VibB aryl- a nucleoside 5'- IMCC3088_RS01200 IMCC3088_RS10635 IMCC3088_RS02080 [+ 2 isozymes] aminotransferase serine/threonine bifunctional reductase: -D-glucopyranose 4-hydroxybutanoyl- 3',5'-ADP a tRNA a peptide a peptide phosphoribosyltransferase large subunit, IMCC3088_RS02870 acetyltransferase/ IMCC3088_RS14145 Detoxification a 2-methyladenine 2503 in 23S rRNA 5'-deoxyadenosine met 1,5-dioxo-octahydro-1H- maltotetraose acetate carrier protein] monophosphate acetate L-citrulline an inosine 34 family protein: dehydratase: ornithine acetylglutamate kinase: IMCC3088_RS09425 1-phosphate CoA vanillin an unwound RNA α-carotene methylglyoxal regulatory subunit: hisZ biosynthetic type: N-acetylglutamate inden-4-yl]propanoyl-CoA in [tRNA Arg2 ] IMCC3088_RS00220 IMCC3088_RS01220 L-aspartyl-4-phosphate acetyltransferase/ IMCC3088_RS09425 sulfite thiosulfate [+ 2 isozymes] ATP IMCC3088_RS05950 N-acetylglutamate synthase: argJ disproportionation reactive species degradation phosphoribosyltransferase: acetolactate synthase (2Z)-2-aminobut- assimilatory sulfite arsenate asp aspartate- synthase: argJ amino-acid N- IV (rhodanese) a [glycine-cleavage RNase III mRNA a long-chain RNase E degradation a debranched an organic hisG small subunit: 2-enoate reductase (NADPH): taurine degradation IV detoxification maltoheptaose [DNA] H O trans-dienelactone L-tartrate amino-acid N- acetyltransferase: SAM complex H protein] a sulfurated [sulfur carrier] processing fatty acyl-CoA 2 a protein α-limit dextrin 3-sulfinoalanine semialdehyde thiosulfate superoxide II (glutaredoxin) GTP substrate mRNA hydroperoxide IMCC3088_RS05955 IMCC3088_RS01205 IMCC3088_RS05095 N 6 -octanoyl-L-lysine glycogen exodeoxyribonuclease substrate acyl-CoA thioesterase: glycogen aspartate kinase: 1-(5-phospho-β-D-ribosyl)-ATP dehydrogenase: acetyltransferase: Glu N-acetyl-L-glutamate thiosulfate lipoyl synthase: ribonuclease prolyl endopeptidase: dienelactone cysteine sulfinate alkyl hydroperoxide tartrate gln N-acetyl-L-glutamate taurine arsenate phosphorylase: I: IMCC3088_RS05840 IMCC3088_RS04510 ribonuclease E: phosphorylase: IMCC3088_RS02870 (S)-2-acetolactate IMCC3088_RS05355 IMCC3088_RS01205 5-semialdehyde hydrogen sulfide sulfurtransferase: : IMCC3088_RS01655 GTP cyclohydrolase II: a 2'- III: rnc IMCC3088_RS12210 hydrolase: desulfinase: reductase subunit F: dehydrogenase: Aromatic Compound Biosynthesis phosphoribosyl-ATP arsenate reductase a [glycine-cleavage IMCC3088_RS00305 RNase III [+ 2 isozymes] IMCC3088_RS05245 IMCC3088_RS00305 2-iminobutanoate L-aspartate- N-acetyl-L- alpha-ketoglutarate- IMCC3088_RS10030 IMCC3088_RS05820 an unsulfurated 2,5-diamino-6-(5-IMCC3088_RS12620 α deoxyribonucleoside [DNA] IMCC3088_RS01285 IMCC3088_RS06850 IMCC3088_RS06780 IMCC3088_RS11820 pyrophosphatase: carbamoyl (glutaredoxin): 5'-deoxyadenosine met complex H protein] -D-glucopyranose an mRNA fragment processing a long-chain a peptide a peptide α-D-glucopyranose L-aspartyl- ketol-acid semialdehyde glutamate dependent taurine sulfite thiocyanate hydrogen [sulfur carrier] formate phospho-D-ribosylamino) maltohexaose 5'-monophosphate sulfite ala 2-hydroxy-3- IMCC3088_RS04395 phosphate IMCC3088_RS00775 N 6 -lipoyl-L-lysine 1-phosphate mRNA fatty acid an mRNA fragment 1-phosphate 2-maleylacetate an alcohol chorismate biosynthesis I 4-phosphate reductoisomerase: bifunctional acetylornithine dioxygenase: peroxide pyrimidin-4(3H)-one oxosuccinate 4-hydroxyphenylpyruvate IMCC3088_RS00700 4-hydroxy- synthase large IMCC3088_RS13740 arsenite β acetylglutamate kinase: ornithine aminotransferase: D-erythrose biosynthesis aspartate- 1-(5-phospho- -D-ribosyl)-AMP (2R)-2,3- tetrahydrodipicolinate subunit: carB IMCC3088_RS09425 acetyltransferase/ IMCC3088_RS00510 [+ 3 isozymes] catalase-peroxidase: 4-phosphate semialdehyde dihydroxy-3- synthase: carbamoyl-phosphate fructose 1,6- a peptidoglycan a [protein]- an organic (2E,7Z)- OPC4-3- a carotenoid an organic phosphoribosyl-AMP 2-oxobutanoate N-acetylglutamate 2-aminoacetaldehyde IMCC3088_RS00090 lysine within methylglyoxal a glycogen palmitoyl-CoA H O NMN pyruvate tyr dehydrogenase: methylbutanoate IMCC3088_RS00795 N-acetylglutamyl- synthase small subunit: an octanoyl-[acp] bisphosphate dimer (generic) L-cysteine hydroperoxide 2 a protein hexadecenoyl-CoA hydroxyacyl-CoA ψ-end group hydroperoxide phospho-2-dehydro- IMCC3088_RS05355 cyclohydrolase: hisI (2S,4S)-4- synthase: argJ gcv protein H fructose-1,6- glycogen lytic murein peroxiredoxin: acyl-CoA thioesterase: aromatic amino acid 2,3-dihydroxy- acetolactate synthase, phosphate IMCC3088_RS01420 Fatty Acid and H O hydroxyl radical peroxiredoxin: 3-deoxyheptonate β N-acetyl-L-ornithine 2 octanoyltransferase: phosphorylase: transglycosylase B: tail-specific protease: enoyl-CoA hydratase: 5'-nucleotidase: enoyl-CoA hydratase: lycopene beta-cyclase: pyruvate kinase: aminotransferase: L-aspartate- 1-(5-phospho- -D-ribosyl)- isovalerate large subunit, hydroxy-2,3,4,5- N-acetylglutamylphosphate Lipid Degradation O arsenite bisphosphate aldolase: IMCC3088_RS04810 IMCC3088_RS04510 IMCC3088_RS04810 aldolase: 5-[(5-phosphoribosylamino) tetrahydrodipicolinate carbamoyl phosphate L-ornithine 2 aIMCC3088_RS00570 [glycine-cleavage IMCC3088_RS09240 IMCC3088_RS00305 IMCC3088_RS00550 [+ 3 isozymes] [+ 2 isozymes] IMCC3088_RS04965 IMCC3088_RS00065 IMCC3088_RS04825 IMCC3088_RS00065 IMCC3088_RS11195 IMCC3088_RS07545 IMCC3088_RS05075 IMCC3088_RS11245 semialdehyde dehydratase: biosynthetic type: reductase: β 6-deoxy-5- α GlcNAc-1,6-anhydro- [+ 3 isozymes] methylideneamino]imidazole- 4-hydroxy- fatty acid -oxidation I acyl-carrier protein complex H protein] D-glyceraldehyde -D-glucopyranose a lipid II an intra- a peptide a peptide 1-(β-D ribofuranosyl) 4-hydroxyphenylpyruvate IMCC3088_RS01210 IMCC3088_RS05950 IMCC3088_RS09425 ketofructose maltotetraose MurNAc-pentapeptide an alcohol palmitate (S)-3-hydroxy-(7Z) OPC4-trans- a carotenoid phosphoenol phospho-2-dehydro- homoserine 4-carboxamide tetrahydrodipicolinate N 6 -octanoyl-L-lysine 3-phosphate 1-phosphate protein disulfide an alcohol acetolactate synthase N-acetyl-L- 1-phosphate -hexadecenoyl-CoA nicotinamide 2-enoyl-CoA β-end group pyruvate 3-deoxyheptonate dehydrogenase: 3-methyl-2- reductase: a (3Z)-alk-3- 1-(5-phosphoribosyl) small subunit: glutamate 5- aldolase: IMCC3088_RS02280 oxobutanoate IMCC3088_RS07900 hydrogencarbonate enoyl-CoA -5-((5- IMCC3088_RS05955 semialdehyde IMCC3088_RS02840 ∆ 3 2 10 2-phospho-4-(cytidine 5'- L-homoserine phosphoribosylamino) (S)-2,3,4,5- acetylornithine superpathway of L-methionine biosynthesis (by sulfhydrylation) ornithine -cis-∆ -trans-enoyl- an N - an L-methionyl- maltotetraose maltose a maltodextrin D-glucopyranose an L-arginyl- an acyl-CoA H O stearoyl-CoA H O (2E,9Z)- a (1->4)-α-D-glucan OPC6-3- a single an organic 3-deoxy-D-arabino- 2-isopropylmalate branched chain amino (S)-2-aceto-2- carbamoyl a protein 2 2 D-glycerate methylideneamino) aminotransferase: Met diphospho)-2-C-methyl-D-erythritol Arg hexadecenoyl-CoA hydroxyacyl-CoA stranded DNA molecule synthase: tetrahydrodipicolinate phosphate carbamoyltransferase: L-tryptophan biosynthesis CoA isomerase: formyltetrahydrofolate [initiator tRNA ] 2-C-methyl-D-erythritol 4-alpha- 4-alpha- [tRNA ] heptulosonate imidazole-4- acid aminotransferase: hydroxybutanoate IMCC3088_RS00510 acyl-CoA thioesterase acyl-CoA thioesterase: glycogen- D-glycerate cytochrome P450: IMCC3088_RS01225 2,3,4,5- synthase IMCC3088_RS00505 IMCC3088_RS12515 methionyl-tRNA 2,4-cyclodiphosphate glucanotransferase: glucanotransferase: arginyltransferase: enoyl-CoA hydratase: enoyl-CoA hydratase: DNA : 7-phosphate carboxamide isomerase: IMCC3088_RS01185 ketol-acid oxaloacetate II: IMCC3088_RS07855 IMCC3088_RS04510 branching : dehydrogenase: IMCC3088_RS07205 tetrahydropyridine- large N-acetyl-L- an N-formyl- formyltransferase: fmt synthase: ispF IMCC3088_RS02965 IMCC3088_RS02965 IMCC3088_RS04925 IMCC3088_RS00065 IMCC3088_RS00065 IMCC3088_RS14015 3-dehydroquinate IMCC3088_RS07320 branched chain amino reductoisomerase: a (2E)-2- an N-terminal [+ 2 isozymes] [+ 2 isozymes] IMCC3088_RS00315 IMCC3088_RS07005 [+ 2 isozymes] 2,6-dicarboxylate N- ornithine aspartate gln chorismate Arg synthase: (2S)-2- acid aminotransferase: IMCC3088_RS00700 subunit: carB long-chain-fatty- L-methionyl- a tetrahydrofolate 2-C-methyl-D-erythritol- D-glucopyranose maltopentaose maltose a maltodextrin a tRNA a carboxylate stearate a (1,6)-α-D-glucosyl- O-phospho- succinyltransferase: enoyl-CoA enoyl-CoA hydratase: met CMP arginyl-[protein] (S)-3-hydroxy-(9Z) OPC6-trans- a short RNA IMCC3088_RS03305 phosphoribulosylformimino- isopropylmalate IMCC3088_RS03040 carbamoyl-phosphate acetylornithine aminotransferase a 2,3,4-saturated acid--CoA ligase: [initiator tRNA ] 2,4-cyclodiphosphate (1,4)-α-glucan hydroxypyruvate an alcohol L-homoserine (R)-2,3-dihydroxy- IMCC3088_RS00835 anthranilate synthase coenzyme A IMCC3088_RS000653-hydroxybutyryl- a 2,3,4- -hexadecenoyl-CoA 2-enoyl-CoA segment AICAR-phosphate 3-isopropylmalate synthase small subunit: deacetylase: family protein: fatty acid IMCC3088_RS05520 acyl-CoA 3-methylpentanoate component I: CoA epimerase: saturated (3R)-3- 3-dehydroquinate dehydratase N-succinyl-2-amino- IMCC3088_RS01420 IMCC3088_RS01200 IMCC3088_RS00220 L-citrulline [+ 15 isozymes] dehydrogenase: threonine synthase: 2,3-dihydroxy-3- IMCC3088_RS03575 IMCC3088_RS12515 hydroxyacyl-CoA IMCC3088_RS02275 imidazole glycerol small subunit: val 6-ketopimelate [+ 2 isozymes] IMCC3088_RS05425 5,10-methylene- 3-methyl-2- 7,8-dihydroneopterin a long-linear S-(2-hydroxyacyl) (2E,11Z)- 4-hydroxybutanoyl- a supercoiled 3-dehydroquinate methylvalerate carbamoyl α α-D-glucopyranose maltotetraose D-glucopyranose protoporphyrin IX Mg 2+ lauroyl-CoA H O an α-limit dextrin D-glycerate a kanamycin phosphate IMCC3088_RS05365 succinyldiaminopimelate L-ornithine argininosuccinate [+ 29 isozymes] a 2,3,4- oxobutanoate -D-glucan glutathione 2 octadecenoyl-CoA CoA duplex DNA dehydratase: hydro-lyase: phosphate anthranilate a 2,3,4-saturated 3'-triphosphate 4-alpha- 4-alpha- synthase, glutamine transaminase: asp synthase: saturated (3S)-3- 3-methyl-2-oxobutanoate 6-pyruvoyltetrahydropterin hydroxyacylglutathione chelatase acyl-CoA thioesterase: 4-alpha- 4-hydroxybutyryl- D-glycerate UvrD/REP helicase: aminoglycoside IMCC3088_RS03505 thr 3-isopropylmalate IMCC3088_RS01210 fatty acyl CoA glucanotransferase: glucanotransferase: enoyl-CoA hydratase: amidotransferase IMCC3088_RS00850 IMCC3088_RS08480 hydroxyacyl-CoA hydroxymethyltransferase: synthase: hydrolase: subunit ChlI: IMCC3088_RS04510 glucanotransferase: CoA dehydratase: dehydrogenase: IMCC3088_RS05065 phosphotransferase: dehydratase (S)-3-methyl-2- anthranilate IMCC3088_RS02965 IMCC3088_RS02965 IMCC3088_RS00065 3-dehydroshikimate subunit: N-succinyl-L,L-2,6- ornithine aspartate kinase: 3-hydroxyacyl-CoA panB IMCC3088_RS00765 IMCC3088_RS05055 IMCC3088_RS06260 [+ 2 isozymes] IMCC3088_RS02965 IMCC3088_RS00040 IMCC3088_RS07005 [+ 4 isozymes] IMCC3088_RS02725 serine/threonine large subunit: L-arginino-succinate phosphoribosyltransferase: trpD 6-pyruvoyl a 2-hydroxy Mg- α IMCC3088_RS09745 oxopentanoate carbamoyltransferase: IMCC3088_RS02870 dehydrogenase: THMPT 2-dehydropantoate PPP a short glucan a short glucan maltose maltotriose glutathione laurate a -limit dextrin a kanamycin dehydratase: IMCC3088_RS05370 diaminopimelate i (S)-3-hydroxy-(11Z) a single shikimate shikimate branched chain amino IMCC3088_RS00505 N-(5-phosphoribosyl) tetrahydropterin carboxylate protoporphyrin with short branches crotonyl-CoA hydroxypyruvate 3'-phosphate IMCC3088_RS01220 imidazole glycerol succinyl- argininosuccinate lyase: IMCC3088_RS02705 -octadecenoyl-CoA stranded DNA dehydrogenase: dehydrogenase: 2-isopropylmaleate acid aminotransferase: L-aspartyl- -anthranilate phosphate synthase diaminopimelate IMCC3088_RS13370 a 2,3,4-saturated a 2,3,4-saturated aroE aroE (2Z)-2-aminobut- IMCC3088_RS01185 4-phosphate phosphoribosylanthranilate 3-ketoacyl- 2-enoate subunit HisH: hisH desuccinylase: L-citrulline oleate β-oxidation fatty acyl CoA CoA thiolase: 3-oxoacyl-CoA Carbohydrate Degradation 1-deoxy-L- 3-isopropylmalate branched chain amino isomerase: maltohexaose maltose maltopentaose maltose 4-hydroxybenzoyl- α-D- (R)-methylmalonyl- starch IMCC3088_RS00830 aspartate- arg IMCC3088_RS01390 CAIR asp asp fumarate H O a polypeptide a tRNA sec ser cis-dienelactone ARP glycero-tetrulose shikimate dehydratase acid aminotransferase: IMCC3088_RS05340 O-acetyl-L-serine hydrogen selenide CoA 2 glucopyranose ATP CoA D-erythro-imidazole- argininosuccinate semialdehyde (2E,5Z)- 4-alpha- 4-alpha- 4-hydroxybenzoyl- aminopeptidase 4-phosphate AICAR small subunit: IMCC3088_RS03040 1-(o-carboxyphenylamino)-1'- xylose degradation I phosphoribosylaminoimidazolesuccinocarboxamide L-aspartate oxidase: 1-phosphate serine--tRNA ligase: methylmalonyl- dienelactone 6,7-dimethyl-8- cyclomaltodextrin shikimate glycerol-phosphate L,L-diaminopimelate synthase: dehydrogenase: tetradecenoyl-CoA D-mannose degradation cysteine synthase B: glucanotransferase: glucanotransferase: CoA thioesterase: N: pepN IMCC3088_RS05365 deoxyribulose 5'-phosphate synthase: IMCC3088_RS10005 IMCC3088_RS02510 glucose-1-phosphate IMCC3088_RS04955 CoA epimerase: hydrolase: ribityllumazine glucanotransferase: kinase: aroK IMCC3088_RS08480 IMCC3088_RS05355 IMCC3088_RS02450 IMCC3088_RS02965 IMCC3088_RS02965 IMCC3088_RS01810 2-iminobutanoate imidazoleglycerol- 3-isopropylmalate ile adenylyltransferase: an L-seryl- IMCC3088_RS04855 IMCC3088_RS01285 synthase: ribH IMCC3088_RS02920 diaminopimelate indole-3-glycerol- enoyl-CoA hydratase: D-xylopyranose D-mannopyranose SAICAR acetate L-selenocysteine D-glucopyranose maltoheptaose D-glucopyranose maltohexaose succinate 2-iminosuccinate an L-amino acid a polypeptide 6,7-dimethyl-8-(1- phosphate dehydratase L-arginino- L-aspartate- acetyl-CoA 4-hydroxybenzoate glgC [tRNA sec ] (S)-methylmalonyl- a cyclodextrin shikimate 3-phosphate epimerase: dapF phosphate IMCC3088_RS00065 : 6-phosphate ADP-α-D-glucose 2-maleylacetate D-ribityl)lumazine dehydratase: large subunit: succinate semialdehyde synthase: trpC mannose-1-phosphate CoA 3-trans,5-cis- IMCC3088_RS00180 IMCC3088_RS07310 IMCC3088_RS05370 argininosuccinate lyase: superpathway of L- guanylyltransferase/ 3-phosphoshikimate 1- meso-diaminopimelate homoserine (1S,2R)-1-C-(indol-3- (S)-3-hydroxy-(5Z) tetradecadienoyl-CoA D-xylulose carboxyvinyltransferase: (2R,3S)-3- IMCC3088_RS13370 dehydrogenase: threonine biosynthesis -tetradecenoyl-CoA mannose-6-phosphate a plant soluble a DNA containing 4-hydroxy-2- 2-oxobutanoate imidazole acetol-phosphate yl)glycerol 3-phosphate acyl-CoA thioesterase a generic 1-oleoyl- (R)-methylmalonyl- a glucosylated a (1->4)- IMCC3088_RS03120 isopropylmalate superpathway of L-serine IMCC3088_RS02280 : isomerase: cpsB 2-oxoglutarate heteroglycan D-glucopyranose an apurinic/ a 9S rRNA a glucan maltotriose a ribonucleic acid H O diphosphate nonenal-[Cys- α diaminopimelate polynucleotide substrate 2 sn-glycerol CoA glycogenin -D-glucan acetolactate synthase, arg oxaloacetate tryptophan synthase II: IMCC3088_RS07855 IMCC3088_RS06610 F6P 4-alpha- 4-alpha- 5-enolpyruvoyl- histidinol-phosphate 3-isopropylmalate and glycine biosynthesis I decarboxylase: S1/P1 : 2-oxoglutarate apyrimidinic site ribonuclease E: ribonuclease inorganic Monoglyceride : methylmalonyl- Gly] conjugate glycogen- cyclomaltodextrin large subunit, L-homoserine aspartate subunit alpha: [+ 2 isozymes] D-xylulose glucanotransferase: III: glucanotransferase: aminopeptidase shikimate 3-phosphate transaminase: dehydrogenase: 3-phospho- IMCC3088_RS07035 IMCC3088_RS08810 dehydrogenase subunit IMCC3088_RS05245 PH: rph pyrophosphatase: IMCC3088_RS01180 CoA mutase: branching enzyme: glucanotransferase: biosynthetic type: L-serine biosynthesis aminotransferase IMCC3088_RS05330 (3E,5Z)- 5-phosphate IMCC3088_RS02965 IMCC3088_RS00845 IMCC3088_RS02965 N: pepN IMCC3088_RS11600 IMCC3088_RS05360 D-glycerate a 5'-phosphooligonucleotide a 5'-phosphomononucleotide E1: IMCC3088_RS11565 a plant soluble a 3'-terminal a 5'-phospho- an rRNA fragment a 5S rRNA a nucleoside a ribonucleic acid IMCC3088_RS08520 oleate glycerol IMCC3088_RS04860 4-hydroxy-2- IMCC3088_RS00315 IMCC3088_RS02920 chorismate synthase: IMCC3088_RS05950 3-phosphoglycerate homoserine O- family protein: tryptophan synthase tetradecadienoate (2S)-2-isopropyl- lys NADH CO succinyl-CoA maltose unsaturated sugar [DNA] D-glucopyranose a glucan diphosphate + gly nonenal-[L- 3-phospho- acetyltransferase: 2 heteroglycan phosphate H a glycogen a cyclodextrin IMCC3088_RS14100 acetolactate synthase L-histidinol-phosphate dehydrogenase: IMCC3088_RS00220 subunit beta: succinyl-CoA Cys] conjugate 3-oxosuccinate D-glycerate IMCC3088_RS00215 small subunit: IMCC3088_RS05130 3-phosphoglycerate [+ 2 isozymes] IMCC3088_RS05335 chorismate histidinol-phosphatase: dehydrogenase: homoserine O- asp IMCC3088_RS05955 D-3-phosphoglycerate indole ser IMCC3088_RS07310 IMCC3088_RS05130 acetyltransferase: Carboxylate Degradation RNase R degradation 38- an (L-cysteinylglycine) (S)-2-aceto-2- dehydrogenase: a diacylglycerol prolipoprotein a glycogen a [protein] N-terminal- 7,8- an aryl dialkyl a cytidine 34 a uridine maltose α-amylose 4-methyl-2- metX substrate RNA canavaninosuccinate lys 2-oleoylglycerol -S-conjugate hydroxybutanoate IMCC3088_RS04540 superpathway of L-alanine biosynthesis D-3-phosphoglycerate aspartate kinase: (with signal peptide) formyl-L-methionine dihydromonapterin phosphate in tRNA Ile2 40 in tRNA 3-phospho- β glycogen ribonuclease R: aminopeptidase histidinol oxopentanoate dehydrogenase: O-acetyl-L- IMCC3088_RS02870 tryptophan synthase superpathway of -D-glucuronide signal peptidase II: argininosuccinate lyase: peptide deformylase: dihydroneopterin phosphotriesterase: tRNA(Ile)-lysidine Monoglyceride lipase: tRNA pseudouridine glycogen- ketol-acid hydroxypyruvate D-galacturonate degradation I D-galactarate degradation II phosphorylase: IMCC3088_RS13590 alpha-glucosidase: N: pepN branched chain amino IMCC3088_RS04540 homoserine hydrogen sulfide subunit beta: and D-glucuronate degradation IMCC3088_RS05870 IMCC3088_RS13370 IMCC3088_RS04715 aldolase: folB IMCC3088_RS06545 synthase: IMCC3088_RS01180 synthase D: branching enzyme: reductoisomerase: histidinol 3-phosphoserine/ 3-methyl-2- 3-phospho- a cleaved lipoprotein an (S-diacyl-sn-glyceryl)-L- IMCC3088_RS00305 a nucleoside 5'- an N-terminal L- 6-(hydroxymethyl) a dialkyl IMCC3088_RS02940 acid aminotransferase: L-aspartyl- IMCC3088_RS05335 aldehydo-D- a diribonucleotide fumarate L-canavanine formate glycolaldehyde a phenol IMCC3088_RS08830 oleate glycerol IMCC3088_RS09585 an L-cysteine- IMCC3088_RS00315 IMCC3088_RS00700 dehydrogenase: oxobutanoate hydroxypyruvate α-D-glucopyranose 34 gly phosphohydroxythreonine a β-D-glucuronoside signal peptide cysteinyl-[apolipoprotein] α monophosphate methionyl-[protein] -7,8-dihydropterin phosphate a lysidine 38- IMCC3088_RS01185 4-phosphate galacturonate galactarate an -limit dextrin a pseudouridine D-glucopyranose S-conjugate amylopectin (R)-2,3-dihydroxy- IMCC3088_RS14295 aminotransferase: branched chain amino 3-phosphoserine/ O-acetylhomoserine 1-phosphate in tRNA Ile2 branched chain amino sulfate uronate isomerase: D-galactarate 40 in tRNA 3-methylpentanoate IMCC3088_RS03135 acid aminotransferase: phosphohydroxythreonine sulfhydrylase: aspartate- trp histidinal acid aminotransferase: IMCC3088_RS01955 dehydratase: 2,3-dihydroxy-3- IMCC3088_RS01185 aminotransferase: IMCC3088_RS05300 sulfate semialdehyde L-proline biosynthesis I D-glucopyranuronate D-tagaturonate IMCC3088_RS01900 IMCC3088_RS03040 3-phospho- D-galactarate degradation I 5-dehydro-4- methylvalerate branched chain amino IMCC3088_RS03135 adenylyltransferase: dehydrogenase: 6 a (1->4)- histidinol a [histone]-N - + hydrogen β orotidine 5'- L-serine altronate deoxy-D-glucarate torulene amino-parathion a penicillin maltoheptaose hydrogencarbonate H SAICAR A(H2) -D-fructofuranose D-glucopyranose α hydro-lyase: dehydrogenase: acid aminotransferase: IMCC3088_RS02005 IMCC3088_RS05355 acetyl-L-lysine a protein peroxide phosphate -D-glucan leu phosphoserine 3-phospho- L-homocysteine Glu oxidoreductase: galactarate 5-dehydro-4-deoxy-D- phosphotriesterase: alpha-glucosidase: IMCC3088_RS01210 IMCC3088_RS14295 IMCC3088_RS03040 L-aspartate- carotenoid oxygenase: penicillin amidase: : carbonic anhydrase: adenylosuccinate lyase: catalase-peroxidase: orotidine 5'-phosphate glycogen- phosphatase: L-serine APS IMCC3088_RS01925 D-galactarate glucarate dehydratase: IMCC3088_RS06545 IMCC3088_RS02940 trypsin: : xylose isomerase: (S)-3-methyl-2- semialdehyde glutamate 5-kinase: IMCC3088_RS02250 IMCC3088_RS06795 IMCC3088_RS13840 IMCC3088_RS06220 IMCC3088_RS04880 IMCC3088_RS00090 decarboxylase: branching enzyme: thrH phosphoserine aldehydo-D-glucuronate dehydratase: IMCC3088_RS00795 D-glucopyranose maltohexaose IMCC3088_RS02600 IMCC3088_RS05750 IMCC3088_RS00180 oxopentanoate his val cys methionine synthase: methionine synthase: IMCC3088_RS00455 D-altronate 3-methyl-2-butenal 4'-apo-β-carotenal 4-aminophenol diethylthiophosphate a carboxylate 6-aminopenicillanate acetate a [histone]-L-lysine H O CO AICAR fumarate H O A IMCC3088_RS03090 IMCC3088_RS00315 [+ 2 isozymes] phosphatase: IMCC3088_RS05085 IMCC3088_RS05085 adenylyl-sulfate kinase: homoserine γ-L-glutamyl IMCC3088_RS01900 2,5- 2 2 a peptide a peptide 2 branched chain amino pyruvate uronate isomerase: 5-dehydro-4- F6P keto-D-fructose UMP starch thrH IMCC3088_RS02010 dehydrogenase: 5-phosphate D-altronate dioxopentanoate acid aminotransferase: IMCC3088_RS01955 deoxy-D-glucarate L-phenylalanine ser valine--pyruvate cysteine IMCC3088_RS02280 dehydratase: α IMCC3088_RS01185 [+ 2 isozymes] met PAPS gamma-glutamyl- -ketoglutarate biosynthesis I alanine transaminase: transaminase: desulfurase IscS: D-fructuronate IMCC3088_RS01900 L-homoserine phosphate reductase: semialdehyde a (1->4)- a (1->4)- branched chain amino serine IMCC3088_RS02285 avtA IMCC3088_RS10600 ser IMCC3088_RS00520 2-dehydro- RNase E mRNA maltohexaose maltopentaose maltotriose oleoyl-CoA H O 6,7-dimethyl-8-(1- UTP dehydrogenase: penicillin G α a 1-monoglyceride 2 a phenyl acetate carbonic acid α acid aminotransferase: chorismate hydroxymethyltransferase: glyA D-mannonate 3-deoxy-D- processing substrate -D-glucan D-ribityl)lumazine nucleoside triphosphate -D-glucan tartronate gabD alpha-glucosidase: alpha-glucosidase: alpha-glucosidase: alpha-glucosidase: acyl-CoA thioesterase: riboflavin synthase IMCC3088_RS03040 chorismate mutase: serine L-glutamate-5- oxidoreductase: gluconate ribonuclease E: penicillin amidase: Monoglyceride lipase: : pyrophosphohydrolase: carbonic anhydrase: glycogen- semialdehyde IMCC3088_RS02940 IMCC3088_RS02940 IMCC3088_RS02940 IMCC3088_RS02940 IMCC3088_RS04510 subunit alpha: IMCC3088_RS03130 hydroxymethyltransferase: glyA ala semialdehyde IMCC3088_RS06960 2-dehydro-3- 2-oxoglutarate IMCC3088_RS05245 IMCC3088_RS06795 a (1->4)- IMCC3088_RS01180 IMCC3088_RS09905 IMCC3088_RS02440 IMCC3088_RS06220 branching enzyme: S-adenosyl-L-methionine cycle II RNase E processing D-glucopyranose maltopentaose D-glucopyranose maltotetraose D-glucopyranose D-glucopyranose maltose [+ 2 isozymes] IMCC3088_RS13265 IMCC3088_RS00315 ile prephenate D-mannonate deoxygluconate kinase: an mRNA fragment phenylacetate 6-aminopenicillanate α-D-glucan glycerol a fatty acid acetate a phenol CO H O O-phospho- product mRNA UMP 2 2 gly alanine racemase: IMCC3088_RS01885 oleate riboflavin ARP a glycogen prephenate L-homoserine S-adenosyl-L-methionine cycle I IMCC3088_RS02760 met mannonate dehydratase: methionine (S)-1-pyrroline- dehydratase: KDGP D-glycerate L-cysteine biosynthesis I threonine synthase: IMCC3088_RS03130 adenosyltransferase: 5-carboxylate IMCC3088_RS06965 L-idonate degradation D-ala IMCC3088_RS02275 D-glycerate 2-kinase: SAM 2-oxo-3- IMCC3088_RS09265 pyrroline-5- 2-keto-3- methionine synthase: 2-dehydro-3- IMCC3088_RS07015 phenylpropanoate L-ornithine ser glycine biosynthesis II IMCC3088_RS05085 carboxylate reductase: deoxy-D-gluconate deoxygluconate 6- L-idonate thr phosphate aldolase: 2-phospho- methionine aromatic amino acid degradation I (L- serine acetyltransferase: IMCC3088_RS09315 2-dehydro-3- IMCC3088_RS09760 a [glycine-cleavage IMCC3088_RS01485 D-glycerate adenosyltransferase: aminotransferase: proline biosynthesis) superpathway of L-asparagine biosynthesis deoxygluconate kinase: IMCC3088_RS11245 serine acetyltransferase: gly complex H protein] L-homocysteine SAM pro IMCC3088_RS01885 D-glyceraldehyde 5-dehydro- IMCC3088_RS09265 6 L-ornithine IMCC3088_RS03325 N -lipoyl-L-lysineglycine cleavage system 3-phosphate D-gluconate met SAH phe ornithine O-acetyl-L-serine aminomethyltransferase KDGP gluconate 5- L-glutamine asp glycine biosynthesis III cyclodeaminase: T: gcvT acetate conversion dehydrogenase: IMCC3088_RS01060 biosynthesis I cysteine synthase B: glycine dehydrogenase 2-keto-3- to acetyl-CoA IMCC3088_RS01920 pro (aminomethyl- asparagine asparagine glyoxylate deoxygluconate 6- methionine synthase: IMCC3088_RS02450 Glu adenosylhomocysteinase: D-gluconate transferring): IMCC3088_RS09270 synthetase B: synthetase B: alanine--glyoxylate phosphate aldolase: acetate IMCC3088_RS05085 S-ribosyl-L- glutamine synthetase: aminotransferase: IMCC3088_RS01485 acetyl-coenzyme L-homocysteine cys IMCC3088_RS02900 SAH IMCC3088_RS09720 IMCC3088_RS09720 D-gluconate kinase: homocysteine IMCC3088_RS00605 CO IMCC3088_RS05385 D-glyceraldehyde A synthetase: 2 pyruvate IMCC3088_RS02230 gln gly 3-phosphate IMCC3088_RS05680 D-gluconate asn asn acetyl-coenzyme 6-phosphate A synthetase: IMCC3088_RS08575 acetyl-CoA

a C4- phosphate keto-D- dicarboxylate a nicotinamide 3,5- a C4- a C4- cis-vaccenoyl-CoA cis-vaccenoyl-CoA cis-vaccenoyl-CoA cis-vaccenoyl-CoA cis-vaccenoyl-CoA cis-vaccenoyl-CoA cis-vaccenoyl-CoA cis-vaccenoyl-CoA cis-vaccenoyl-CoA cis-vaccenoyl-CoA cis-vaccenoyl-CoA cis-vaccenoyl-CoA cis-vaccenoyl-CoA cis-vaccenoyl-CoA cis-vaccenoyl-CoA cis-vaccenoyl-CoA a dicarboxylate a nucleotide a macrolide fructose 6- a lipopolysaccharide a nucleoside a nucleoside phosphate mononucleotide dimethoxytoluene dicarboxylate dicarboxylate a 2,3,4-saturated fatty acyl CoA a 2,3,4-saturated fatty acyl CoA a 2,3,4-saturated fatty acyl CoA a 2,3,4-saturated fatty acyl CoA a 2,3,4-saturated fatty acyl CoA a 2,3,4-saturated fatty acyl CoA a 2,3,4-saturated fatty acyl CoA a 2,3,4-saturated fatty acyl CoA a 2,3,4-saturated fatty acyl CoA a 2,3,4-saturated fatty acyl CoA a 2,3,4-saturated fatty acyl CoA a 2,3,4-saturated fatty acyl CoA a 2,3,4-saturated fatty acyl CoA a 2,3,4-saturated fatty acyl CoA a 2,3,4-saturated fatty acyl CoA a 2,3,4-saturated fatty acyl CoA phosphate a lipopolysaccharide predicted ABC predicted predicted ABC transporter ABC RS11710 RS07915 RS06205 RS02025 RS00120 RS10685 RS01870 RS01875 RS14255 efflux transporter of RS14095 RS01835 RS11415 RS09685 RS11970 RS01855 RS06825 RS05780 RS08820 RS02735 RS08005 RS05755 RS08235 RS08240 RS01370 RS05520 RS01690 PrpE RS01195 of a C4- transporter a lipopolysaccharide dicarboxylate of phosphate a nicotinamide 3,5- a C4- a C4- cis-vaccenate cis-vaccenate cis-vaccenate cis-vaccenate cis-vaccenate cis-vaccenate cis-vaccenate cis-vaccenate cis-vaccenate cis-vaccenate cis-vaccenate cis-vaccenate cis-vaccenate cis-vaccenate cis-vaccenate cis-vaccenate a dicarboxylate a nucleotide a macrolide D-fructose a nucleoside a nucleoside mononucleotide dimethoxytoluene dicarboxylate dicarboxylate a lipopolysaccharide a 2,3,4-saturated fatty acid a 2,3,4-saturated fatty acid a 2,3,4-saturated fatty acid a 2,3,4-saturated fatty acid a 2,3,4-saturated fatty acid a 2,3,4-saturated fatty acid a 2,3,4-saturated fatty acid a 2,3,4-saturated fatty acid a 2,3,4-saturated fatty acid a 2,3,4-saturated fatty acid a 2,3,4-saturated fatty acid a 2,3,4-saturated fatty acid a 2,3,4-saturated fatty acid a 2,3,4-saturated fatty acid a 2,3,4-saturated fatty acid a 2,3,4-saturated fatty acid phosphate a C4- a lipopolysaccharide dicarboxylate phosphate This diagram was automatically generated by SRI International Pathway Tools version 25.0, authors S. Paley and P.D. Karp.