Supplement Data 2 Properties of PPMV-1 Strains in This Study in Comparison to Other NDV Strains
Supplement data 2Properties of PPMV-1 strains in this study in comparison to other NDV strains
Strain / Gene / Gene start / Gene end / Gene sequence / Coding sequence / Length of protein / Intergenic regionUlster/67 / NP / UGCCCAUCUU / AAUCUUUUUU / 56-1,801 / 122-1,591 / 489 / CA
La Sota / NP / UGCCCAUCUU / AAUCUUUUUU / 56-1,801 / 122-1,591 / 489 / CA
Mukteswar / NP / UGCCCAUCUU / AAUCUUUUUUU / 56-1,802 / 122-1,591 / 489 / A
Herts/33 / NP / UGCCCAUCUU / AAUCUUUUUUU / 56-1,802 / 122-1,591 / 489 / A
Anhinga / NP / UGCCCAUCUU / AAUCUUUUUUU / 56-1,808 / 122-1,591 / 489 / A
Strain 1.3 / NP / UGCCCAUCUU / AAUCUUUUUUU / 56-1,808 / 122-1.591 / 489 / A
pi/CH/LJL/100605 / NP / UGCCCAUCUU / AAUCUUUUUUU / 56-1,808 / 122-1,591 / 489 / A
pi/CH/LGD/110208 / NP / UGCCCAUCUU / AAUCUUUUUUU / 56-1,808 / 122-1,591 / 489 / A
pi/CH/LLN/110713 / NP / UGCCCAUCUU / AAUCUUUUUUU / 56-1,808 / 122-1,591 / 489 / A
pi/CH/LHLJ/110813 / NP / UGCCCAUCUU / AAUCUUUUUUU / 56-1,808 / 122-1,591 / 489 / A
pi/CH/LHLJ/110822 / NP / UGCCCAUCUU / AAUCUUUUUUU / 56-1,808 / 122-1,591 / 489 / A
pi/CH/LGD/110945 / NP / UGCCCAUCUU / AAUCUUUUUUU / 56-1,808 / 122-1,591 / 489 / A
pi/CH/LGD/110947 / NP / UGCCCAUCUU / AAUCUUUUUUU / 56-1,808 / 122-1.591 / 489 / A
pi/CH/LJL/120404 / NP / UGCCCAUCUU / AAUCUUUUUUU / 56-1,808 / 122-1.591 / 489 / A
NA-1 / NP / UGCCCAUCUU / AAUCUUUUUUU / 56-1,808 / 122-1,591 / 489 / A
QH1 / NP / UGCCCAUCUU / AAUCUUUUUU / 56-1,808 / 122-1,591 / 489 / A
F48E8 / NP / UGCCCAUCUU / AAUCUUUUUU / 56-1,808 / 122-1,591 / 489 / A
DE-R49/99 / NP / UGCCCAUCUU / AAUCUUUUUU / 56-1,801 / 122-1,591 / 489 / CA
Ulster/67 / P / UGCCCAUCUU / AAUUCUUUUUU / 1,804-3,254 / 1,887-3,074 / 395 / A
La Sota / P / UGCCCAUCUU / AAUUCUUUUUU / 1,804-3,254 / 1,887-3,074 / 395 / A
Mukteswar / P / UGCCCAUCUU / AAUUCUUUUUU / 1,804-3,254 / 1,887-3,074 / 395 / A
Herts/33 / P / UGCCCAUCUU / AAUUCUUUUUU / 1,804-3,254 / 1,887-3,074 / 395 / A
Anhinga / P / UGCCCAUCUU / AAUUCUUUUUU / 1,810-3,260 / 1,893-3,080 / 395 / A
Strain / Gene / Gene start / Gene end / Gene sequence / Coding sequence / Length of protein / Intergenic region
Strain 1.3 / P / UGCCCAUCUU / AAUUCUUUUUU / 1,810-3,260 / 1,893-3,080 / 395 / A
pi/CH/LJL/100605 / P / UGCCCAUCUU / AAUUCUUUUUU / 1,810-3,260 / 1,893-3,080 / 395 / A
pi/CH/LGD/110208 / P / UGCCCAUCUU / AAUUCUUUUUU / 1,810-3,260 / 1,893-3,080 / 395 / A
pi/CH/LLN/110713 / P / UGCCCAUCUU / AAUUCUUUUUU / 1,810-3,260 / 1,893-3,080 / 395 / A
pi/CH/LHLJ/110813 / P / UGCCCAUCUU / AAUUCUUUUUU / 1,810-3,260 / 1,893-3,080 / 395 / A
pi/CH/LHLJ/110822 / P / UGCCCAUCUU / AAUUCUUUUUU / 1,810-3,260 / 1,893-3,080 / 395 / A
pi/CH/LGD/110945 / P / UGCCCAUCUU / AAUUCUUUUUU / 1,810-3,260 / 1,893-3,080 / 395 / A
pi/CH/LGD/110947 / P / UGCCCAUCUU / AAUUCUUUUUU / 1,810-3,260 / 1,893-3,080 / 395 / A
pi/CH/LJL/120404 / P / UGCCCAUCUU / AAUUCUUUUUU / 1,810-3,260 / 1,893-3,080 / 395 / A
NA-1 / P / UGCCCAUCUU / AAUUCUUUUUU / 1,810-3,250 / 1,893-3,080 / 395 / A
QH1 / P / UGCCCAUCUU / AAUUCUUUUUU / 1,810-3,250 / 1,893-3,080 / 395 / A
F48E8 / P / UGCCCAUCUU / AAUUCUUUUUU / 1,810-3,250 / 1,893-3,080 / 395 / A
DE-R49/99 / P / UGCCCAUCUU / AAUUCUUUUUU / 1,804-3,266 / 1,887-3,086 / 399 / A
Ulster/67 / V / 239
La Sota / V / 239
Mukteswar / V / 239
Herts/33 / V / 239
Anhinga / V / 239
Strain 1.3 / V / 239
pi/CH/LJL/100605 / V / 239
pi/CH/LGD/110208 / V / 239
pi/CH/LLN/110713 / V / 239
pi/CH/LHLJ/110813 / V / 239
pi/CH/LHLJ/110822 / V / 239
Strain / Gene / Gene start / Gene end / Gene sequence / Coding sequence / Length of protein / Intergenic region
pi/CH/LGD/110945 / V / 239
pi/CH/LGD/110947 / V / 239
pi/CH/LJL/120404 / V / 239
NA-1 / V / 239
QH1 / V / 239
F48E8 / V / 239
DE-R49/99 / V / 239
Ulster/67 / W / 181
La Sota / W / 179
Mukteswar / W / 227
Herts/33 / W / 196
Anhinga / W / 179
Strain 1.3 / W / 227
pi/CH/LJL/100605 / W / 181
pi/CH/LGD/110208 / W / 227
pi/CH/LLN/110713 / W / 227
pi/CH/LHLJ/110813 / W / 227
pi/CH/LHLJ/110822 / W / 227
pi/CH/LGD/110945 / W / 227
pi/CH/LGD/110947 / W / 227
pi/CH/LJL/120404 / W / 227
NA-1 / W / 227
QH1 / W / 227
F48E8 / W / 227
Strain / Gene / Gene start / Gene end / Gene sequence / Coding sequence / Length of protein / Intergenic region
DE-R49/99 / W / 174
Ulster/67 / M / UGCCCAUCUU / AAUCUUUUUU / 3,256-4,496 / 3,290-4,384 / 364 / G
La Sota / M / UGCCCAUCUU / AAUCUUUUUU / 3,256-4,496 / 3,290-4,384 / 364 / G
Mukteswar / M / UGCCCAUCUU / AAUCUUUUUU / 3,256-4,496 / 3,290-4,384 / 364 / G
Herts/33 / M / UGCCCAUCUU / AAUCUUUUUU / 3,256-4,496 / 3,290-4,432 / 380 / G
Anhinga / M / UGCCCAUCUU / AAUCUUUUUU / 3,262-4,502 / 3,296-4,390 / 364 / G
Strain 1.3 / M / UGCCCAUCUU / AAUCUUUUUU / 3,262-4,502 / 3,296-4,390 / 364 / G
pi/CH/LJL/100605 / M / UGCCCAUCUU / AAUCUUUUUU / 3,262-4,502 / 3,296-4,390 / 364 / G
pi/CH/LGD/110208 / M / UGCCCAUCUU / AAUCUUUUUU / 3,262-4,502 / 3,296-4,390 / 364 / G
pi/CH/LLN/110713 / M / UGCCCAUCUU / AAUCUUUUUU / 3,262-4,502 / 3,296-4,390 / 364 / G
pi/CH/LHLJ/110813 / M / UGCCCAUCUU / AAUCUUUUUU / 3,262-4,502 / 3,296-4,390 / 364 / G
pi/CH/LHLJ/110822 / M / UGCCCAUCUU / AAUCUUUUUU / 3,262-4,502 / 3,296-4,390 / 364 / G
pi/CH/LGD/110945 / M / UGCCCAUCUU / AAUCUUUUUU / 3,262-4,502 / 3,296-4,390 / 364 / G
pi/CH/LGD/110947 / M / UGCCCAUCUU / AAUCUUUUUU / 3,262-4,502 / 3,296-4,390 / 364 / G
pi/CH/LJL/120404 / M / UGCCCAUCUU / AAUCUUUUUU / 3,262-4,502 / 3,296-4,390 / 364 / G
NA-1 / M / UGCCCAUCUU / AAUCUUUUUU / 3,262-4,502 / 3,296-4,390 / 364 / G
QH1 / M / UGCCCAUCUU / AAUCUUUUUU / 3,262-4,502 / 3,296-4,390 / 364 / G
F48E8 / M / UGCCCAUCUU / AAUCUUUUUU / 3,262-4,502 / 3,296-4,390 / 364 / G
DE-R49/99 / M / UGCCCAUCUU / AAUCUUUUUU / 3,268-4,508 / 3,302-4,396 / 364 / G
Ulster/67 / F / UGCCCAUCUU / AAUUCUUUUUU / 4,498-6,289 / 4,544-6,205 / 553 / GACGGCCTACATCTACTGGTTTCCCGTTGTA
La Sota / F / UGCCCAUCUU / AAUUCUUUUUU / 4,498-6,289 / 4,544-6,205 / 553 / GATGGCCAACATCTACTGGTTTCCTGCTATA
Mukteswar / F / UGCCCAUCUU / AAUUCUUUUUU / 4,498-6,289 / 4,544-6,205 / 553 / GATGGCCTACATCCACTTGTTTTCCGTTATA
Herts/33 / F / UGCCCAUCUU / AAUUCUUUUU / 4,498-6,288 / 4,544-6,205 / 553 / CGATGACCTACATTCACTGTTTTTTCGTTATG
Anhinga / F / UGCCCAUCUU / CAUUCUUUUUU / 4,504-6,295 / 4,550-6,211 / 553 / GATGACCTATATTCACTGGTTTCTCGTTATG
Strain / Gene / Gene start / Gene end / Gene sequence / Coding sequence / Length of protein / Intergenic region
Strain 1.3 / F / UGCCCAUCUU / AAUUCUUUUUU / 4,504-6,295 / 4,550-6,211 / 553 / GATGACCTATATTCGTTGACTATCCGTTATG
pi/CH/LJL/100605 / F / UGCCCAUCUU / AAUUCUUUUUU / 4,504-6,295 / 4,550-6,211 / 553 / GATGACCTATATTCGTTGACTATCCGTTATG
pi/CH/LGD/110208 / F / UGCCCAUCUU / AAUUCUUUUU / 4,504-6,294 / 4,550-6,211 / 553 / CGATGACCTATATTCGTTGACTATCCGTCATG
pi/CH/LLN/110713 / F / UGCCCAUCUU / AAUUCUUUUUU / 4,504-6,295 / 4,550-6,211 / 553 / GATGACCTATATTCGTTGGCTTTTCGTTATG
pi/CH/LHLJ/110813 / F / UGCCCAUCUU / AAUUCUUUUUU / 4,504-6,295 / 4,550-6,211 / 553 / GATGGCCTATATTCGTTGACTATCCGTTATG
pi/CH/LHLJ/110822 / F / UGCCCAUCUU / AAUUCUUUUUU / 4,504-6,295 / 4,550-6,211 / 553 / GATGGCCTATATTCGTTGACTATCCGTTATG
pi/CH/LGD/110945 / F / UGCCCAUCUU / AAUUCUUUUUU / 4,504-6,295 / 4,550-6,211 / 553 / GATGACCTATATTCGTTGACTATCCGTTACG
pi/CH/LGD/110947 / F / UGCCCAUCUU / AAUUCUUUUUU / 4,504-6,295 / 4,550-6,211 / 553 / GATGACCTATATTCGTTGACTATCCGTTACG
pi/CH/LJL/120404 / F / UGCCCAUCUU / AAUUCUUUUU / 4,504-6,294 / 4,550-6,211 / 553 / CGATGACCTATATTCGTTGACTATCCGTTATG
NA-1 / F / UGCCCAUCUU / AAUUCUUUUUU / 4,504-6,285 / 4,550-6,211 / 553 / GATGACCCTTGTCCGTTGGTTTCTCGTTATG
QH1 / F / UGCCCAUCUU / AAUUCUUUUUU / 4,504-6,285 / 4,550-6,211 / 553 / GACAACCTATATTCACGGTTTTCCCGTTATG
F48E8 / F / UGCCCAUCUU / AAUUCUUUUUU / 4,504-6,285 / 4,550-6,211 / 553 / GATGGCCTAAACCCACTAGTTTCCCGTTGTA
DE-R49/99 / F / UGCCCAUCUU / GAUUCUUUUUU / 4,510-6,301 / 4,556-6,217 / 553 / GACTCAGAGTAACCTCCTTACCACTTATATA
Ulster/67 / HN / UGCCCAUCUU / AAUUCUUUUUU / 6,321-8,322 / 6,412-8,262 / 616 / ACACCCACCATCACCCTATGTTCCGTTTTGTTGAGTACCTCTTATCA
La Sota / HN / UGCCCAUCUU / AAUUCUUUUUU / 6,321-8,322 / 6,412-8,145 / 577 / ACATTCACCGTTACTCTATGTTCCGTTTTGTCGAGTACCATTTATTA
Mukteswar / HN / UGCCCAUCUU / AAUUCUUUUUU / 6,321-8,322 / 6,412-8,127 / 571 / ACACCTGCCATCACTTTATATTCCGTTTCGTCGAGTGTCTCCTATCG
Herts/33 / HN / UGCCCAUCUU / AAUUCUUUUUU / 6,321-8,322 / 6,412-8,127 / 571 / ATACTCACCGTCACTCTATGTACCGATTTGTTGGGTGCCTCCTATCG
Anhinga / HN / UGCCCAUCUU / AAAUCUUUUUU / 6,327-8,328 / 6,418-8,133 / 571 / ATACTGTCCACCGCTCTATATTTTTTTTTATTGAATGTCTTCCATCG
Strain 1.3 / HN / UGCCCAUCUU / AAUUCUUUUUU / 6,327-8,328 / 6,418-8,133 / 571 / ATACCTACCGTCACTTTATGTCCCCTTTTGTTGTATGTTTCCTGTCG
pi/CH/LJL/100605 / HN / UGCCCAUCUU / AAUUCUUUUUU / 6,327-8,328 / 6,418-8,133 / 571 / ATACCTACCGTCACTTCATGTTCCCTTTTGTTGTATGTTTTCTGTCG
pi/CH/LGD/110208 / HN / UGCCCAUCUU / AAUUCUUUUUU / 6,327-8,328 / 6,418-8,133 / 571 / ATACCTTCCGTCACTTTATGCCCCCTTTTGTTGTATTTTTTCTGTCG
pi/CH/LLN/110713 / HN / UGCCCAUCUU / AAUUCUUUUUU / 6,327-8,328 / 6,418-8,133 / 571 / ATACCTACCATCACTTTATGTTCCCTTTTGTTGTATGTTTCCGGTTG
pi/CH/LHLJ/110813 / HN / UGCCCAUCUU / AAUUCUUUUUU / 6,327-8,328 / 6,418-8,133 / 571 / ATACCTACCGTCACTTTATGTCCTCTTTTGTTGTATGTTTCCTGTCG
pi/CH/LHLJ/110822 / HN / UGCCCAUCUU / AAUUCUUUUUU / 6,327-8,328 / 6,418-8,133 / 571 / ATACCTACCGTCACTTTATGTCCTCTTTTGTTGTATGTTTCCTGTCG
Strain / Gene / Gene start / Gene end / Gene sequence / Coding sequence / Length of protein / Intergenic region
pi/CH/LGD/110945 / HN / UGCCCAUCUU / AAAUCUUUUUU / 6,327-8,328 / 6,418-8,133 / 571 / ATACCTACCGTCACTTTATGTCCCCTTTTGTTGTATGTTTCCTGTCG
pi/CH/LGD/110947 / HN / UGCCCAUCUU / AAAUCUUUUUU / 6,327-8,328 / 6,418-8,133 / 571 / ATACCTACCGTCACTTTATGTCCCCTTTTGTTGTATGTTTCCTGTCG
pi/CH/LJL/120404 / HN / UGCCCAUCUU / AAUUCUUUUUU / 6,327-8,328 / 6,418-8,133 / 571 / ATACCTACCGTCACTTTATGTCCCCTTTTGTTGTATTTTTCCTGTCG
NA-1 / HN / UGCCCAUCUU / AAUUCUUUUUU / 6,327-8,328 / 6,418-8,133 / 571 / ATGTTTTTCGTAACTCTATATTCCCCTTTGTTGGTTGTCCTCTCTTG
QH1 / HN / UGCCCAUCUU / AAAUCUUUUUU / 6,327-8,328 / 6,418-8,133 / 571 / ATACTTTCCATCACTCCATATTCTTTTTTGTTGGGTTTCTCCTATTA
F48E8 / HN / UGCCCAUCUU / AAUUCUUUUUU / 6,327-8,328 / 6,418-8,133 / 571 / ATATCTACCATCACTCTATGCTCTGTTTCGTTGAGTGCCACCTATTG
DE-R49/99 / HN / UGCCCAUCUU / AAUCUUUUUU / 6,333-8,333 / 6,424-8,181 / 585 / GACATCTGTGTCGGCGCTATCCGTTTCTATTCGTTTGGTCTCCCCGCG
Ulster/67 / L / UGCCCAUCCU / AAUCUUUUUU / 8,370-15,072 / 8,381-14,995 / 2,204
La Sota / L / UGCCCAUCCU / AAUCUUUUUU / 8,370-15,073 / 8,381-14,995 / 2,204
Mukteswar / L / UGCCCAUCCU / AAUCUUUUUUU / 8,370-15,073 / 8,381-14,995 / 2,204
Herts/33 / L / UGCCCAUCCU / AAUCUUUUUU / 8,370-15,063 / 8,381-14,995 / 2,204
Anhinga / L / UGCCCAUCCU / AAUCUUUUUU / 8,376-15,078 / 8,387-15,001 / 2,204
Strain 1.3 / L / UGCCCAUCCU / AAUCUUUUUU / 8,376-15,078 / 8,387-15,001 / 2,204
pi/CH/LJL/100605 / L / UGCCCAUCCU / AAUCUUUUUU / 8,376-15,078 / 8,387-15,001 / 2,204
pi/CH/LGD/110208 / L / UGCCCAUCCU / AAUCUUUUUU / 8,376-15,078 / 8,387-15,001 / 2,204
pi/CH/LLN/110713 / L / UGCCCAUCCU / AAUCUUUUUU / 8,376-15,078 / 8,387-15,001 / 2,204
pi/CH/LHLJ/110813 / L / UGCCCAUCCU / AAUCUUUUUU / 8,376-15,078 / 8,387-15,001 / 2,204
pi/CH/LHLJ/110822 / L / UGCCCAUCCU / AAUCUUUUUU / 8,376-15,078 / 8,387-15,001 / 2,204
pi/CH/LGD/110945 / L / UGCCCAUCCU / AAUCUUUUUU / 8,376-15,078 / 8,387-15,001 / 2,204
pi/CH/LGD/110947 / L / UGCCCAUCCU / AAUCUUUUUU / 8,376-15,078 / 8,387-15,001 / 2,204
pi/CH/LJL/120404 / L / UGCCCAUCCU / AAUCUUUUUU / 8,376-15,078 / 8,387-15,001 / 2,204
NA-1 / L / UGCCCAUCCU / AAUCUUUUUU / 8,376-15,079 / 8,387-15,001 / 2,204
QH1 / L / UGCCCAUCCU / AAUCUUUUUU / 8,376-15,079 / 8,387-15,001 / 2,204
F48E8 / L / UGCCCAUCCU / AAUCUUUUUU / 8,376-15,079 / 8,387-15,001 / 2,204
Strain / Gene / Gene start / Gene end / Gene sequence / Coding sequence / Length of protein / Intergenic region
DE-R49/99 / L / UGCCCAUCCU / AAUCUUUUUU / 8,382-15,084 / 8,393-15,007 / 2,204